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BioLiP
Download all results in tab-seperated text for 2564 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1201 6xtx:3 (3.29) BS03 AGS 3.6.4.12 GO:0000727 ... P25205 32453425
    1202 6xtx:4 (3.29) BS02 AGS 3.6.4.12 GO:0000727 ... P33991 32453425
    1203 6xtx:4 (3.29) BS03 AGS 3.6.4.12 GO:0000727 ... P33991 32453425
    1204 6xtx:6 (3.29) BS02 AGS 3.6.4.12 GO:0000727 ... Q14566 32453425
    1205 6xtx:7 (3.29) BS02 AGS 3.6.4.12 GO:0000727 ... P33993 32453425
    1206 6xtx:7 (3.29) BS04 AGS 3.6.4.12 GO:0000727 ... P33993 32453425
    1207 6yk0:A (2.9) BS01 AGS 2.7.1.35 GO:0000287 ... Q8K183 33318193
    1208 6yk0:B (2.9) BS01 AGS 2.7.1.35 GO:0000287 ... Q8K183 33318193
    1209 6yk0:C (2.9) BS01 AGS 2.7.1.35 GO:0000287 ... Q8K183 33318193
    1210 6yk0:D (2.9) BS01 AGS 2.7.1.35 GO:0000287 ... Q8K183 33318193
    1211 6yk1:A (2.4) BS02 AGS 2.7.1.35 GO:0000287 ... Q8K183 33318193
    1212 6yk1:B (2.4) BS01 AGS 2.7.1.35 GO:0000287 ... Q8K183 33318193
    1213 6yk1:C (2.4) BS01 AGS 2.7.1.35 GO:0000287 ... Q8K183 33318193
    1214 6yk1:D (2.4) BS01 AGS 2.7.1.35 GO:0000287 ... Q8K183 33318193
    1215 6z1f:2 (2.86) BS01 AGS ? GO:0005524 ... P58555 32979320
    1216 6z1f:3 (2.86) BS01 AGS ? GO:0005524 ... P58555 32979320
    1217 6z1f:4 (2.86) BS01 AGS ? GO:0005524 ... P58555 32979320
    1218 6z1f:4 (2.86) BS02 AGS ? GO:0005524 ... P58555 32979320
    1219 6z1f:5 (2.86) BS01 AGS ? GO:0005524 ... P58555 32979320
    1220 6z1f:5 (2.86) BS02 AGS ? GO:0005524 ... P58555 32979320
    1221 6z1f:6 (2.86) BS01 AGS ? GO:0005524 ... P58555 32979320
    1222 6z4x:B (2.98) BS01 AGS 2.7.11.22 GO:0004672 ... G0SFC6 33055219
    1223 6z4x:E (2.98) BS01 AGS 2.7.11.22 GO:0004672 ... G0SFC6 33055219
    1224 6ziw:I (2.18) BS01 AGS 2.7.11.1 GO:0004672 ... Q9Y616 N/A
    1225 6zwm:A (3.2) BS01 AGS 2.7.11.1 GO:0000139 ... P42345 33158864
    1226 6zwm:B (3.2) BS01 AGS 2.7.11.1 GO:0000139 ... P42345 33158864
    1227 6zwm:E (3.2) BS02 AGS ? GO:0001932 ... Q6R327 33158864
    1228 6zwm:F (3.2) BS02 AGS ? GO:0001932 ... Q6R327 33158864
    1229 6zwo:B (3.0) BS01 AGS 2.7.11.1 GO:0000139 ... P42345 33158864
    1230 6zwo:F (3.0) BS02 AGS ? GO:0001932 ... Q6R327 33158864
    1231 7akm:A (1.93) BS01 AGS 2.7.11.1 GO:0000077 ... O14757 33789090
    1232 7bdi:B (2.8) BS01 AGS 3.6.4.13 GO:0003676 ... O75643 34048711
    1233 7bdi:B (2.8) BS02 AGS 3.6.4.13 GO:0003676 ... O75643 34048711
    1234 7d8i:A (1.62) BS01 AGS 3.6.1.15
    3.6.1.6
    GO:0000287 ... Q7A4T2 33955674
    1235 7e21:A (2.9) BS05 AGS 7.2.2.13 GO:0000166 ... P05023 35803952
    1236 7ejw:A (1.98) BS01 AGS ? GO:0005524 ... G3XD64 34669473
    1237 7ejw:A (1.98) BS03 AGS ? GO:0005524 ... G3XD64 34669473
    1238 7ejw:B (1.98) BS01 AGS ? GO:0005524 ... G3XD64 34669473
    1239 7ejw:B (1.98) BS02 AGS ? GO:0005524 ... G3XD64 34669473
    1240 7fd4:A (2.4) BS01 AGS 3.4.21.53 GO:0004176 ... A0A059VAZ3 34652947
    1241 7fd4:B (2.4) BS01 AGS 3.4.21.53 GO:0004176 ... A0A059VAZ3 34652947
    1242 7fd4:B (2.4) BS03 AGS 3.4.21.53 GO:0004176 ... A0A059VAZ3 34652947
    1243 7fd4:C (2.4) BS01 AGS 3.4.21.53 GO:0004176 ... A0A059VAZ3 34652947
    1244 7fd4:D (2.4) BS02 AGS 3.4.21.53 GO:0004176 ... A0A059VAZ3 34652947
    1245 7fd4:F (2.4) BS01 AGS 3.4.21.53 GO:0004176 ... A0A059VAZ3 34652947
    1246 7fd5:A (2.4) BS02 AGS 3.4.21.53 GO:0004176 ... A0A059VAZ3 34652947
    1247 7fd5:B (2.4) BS02 AGS 3.4.21.53 GO:0004176 ... A0A059VAZ3 34652947
    1248 7fd5:C (2.4) BS02 AGS 3.4.21.53 GO:0004176 ... A0A059VAZ3 34652947
    1249 7fid:A (2.44) BS02 AGS 3.4.21.53 GO:0004176 ... A0A059VAZ3 34757797
    1250 7fid:B (2.44) BS01 AGS 3.4.21.53 GO:0004176 ... A0A059VAZ3 34757797
    1251 7fid:B (2.44) BS02 AGS 3.4.21.53 GO:0004176 ... A0A059VAZ3 34757797
    1252 7fid:C (2.44) BS01 AGS 3.4.21.53 GO:0004176 ... A0A059VAZ3 34757797
    1253 7fie:A (2.36) BS02 AGS 3.4.21.53 GO:0004176 ... A0A059VAZ3 34757797
    1254 7fie:B (2.36) BS02 AGS 3.4.21.53 GO:0004176 ... A0A059VAZ3 34757797
    1255 7fie:C (2.36) BS02 AGS 3.4.21.53 GO:0004176 ... A0A059VAZ3 34757797
    1256 7fie:D (2.36) BS02 AGS 3.4.21.53 GO:0004176 ... A0A059VAZ3 34757797
    1257 7fie:D (2.36) BS03 AGS 3.4.21.53 GO:0004176 ... A0A059VAZ3 34757797
    1258 7fiz:A (3.28) BS02 AGS 3.4.21.53 GO:0004176 ... A0A059VAZ3 34757797
    1259 7fiz:B (3.28) BS02 AGS 3.4.21.53 GO:0004176 ... A0A059VAZ3 34757797
    1260 7fiz:B (3.28) BS03 AGS 3.4.21.53 GO:0004176 ... A0A059VAZ3 34757797
    1261 7fiz:C (3.28) BS02 AGS 3.4.21.53 GO:0004176 ... A0A059VAZ3 34757797
    1262 7fiz:C (3.28) BS03 AGS 3.4.21.53 GO:0004176 ... A0A059VAZ3 34757797
    1263 7fiz:F (3.28) BS01 AGS 3.4.21.53 GO:0004176 ... A0A059VAZ3 34757797
    1264 7jqq:A (4.1) BS03 AGS 3.6.4.- GO:0003677 ... P11014 33962953
    1265 7jqq:B (4.1) BS04 AGS 3.6.4.- GO:0003677 ... P11014 33962953
    1266 7jqq:C (4.1) BS03 AGS 3.6.4.- GO:0003677 ... P11014 33962953
    1267 7jqq:D (4.1) BS02 AGS 3.6.4.- GO:0003677 ... P11014 33962953
    1268 7jy5:A (2.89) BS01 AGS 3.6.4.6 GO:0000502 ... P55072 33402676
    1269 7jy5:A (2.89) BS02 AGS 3.6.4.6 GO:0000502 ... P55072 33402676
    1270 7jy5:A (2.89) BS03 AGS 3.6.4.6 GO:0000502 ... P55072 33402676
    1271 7jy5:B (2.89) BS01 AGS 3.6.4.6 GO:0000502 ... P55072 33402676
    1272 7jy5:B (2.89) BS02 AGS 3.6.4.6 GO:0000502 ... P55072 33402676
    1273 7jy5:C (2.89) BS01 AGS 3.6.4.6 GO:0000502 ... P55072 33402676
    1274 7jy5:C (2.89) BS02 AGS 3.6.4.6 GO:0000502 ... P55072 33402676
    1275 7jy5:C (2.89) BS03 AGS 3.6.4.6 GO:0000502 ... P55072 33402676
    1276 7jy5:D (2.89) BS01 AGS 3.6.4.6 GO:0000502 ... P55072 33402676
    1277 7jy5:D (2.89) BS02 AGS 3.6.4.6 GO:0000502 ... P55072 33402676
    1278 7jy5:D (2.89) BS03 AGS 3.6.4.6 GO:0000502 ... P55072 33402676
    1279 7jy5:E (2.89) BS01 AGS 3.6.4.6 GO:0000502 ... P55072 33402676
    1280 7jy5:E (2.89) BS02 AGS 3.6.4.6 GO:0000502 ... P55072 33402676
    1281 7jy5:F (2.89) BS01 AGS 3.6.4.6 GO:0000502 ... P55072 33402676
    1282 7jy5:F (2.89) BS02 AGS 3.6.4.6 GO:0000502 ... P55072 33402676
    1283 7jy5:F (2.89) BS03 AGS 3.6.4.6 GO:0000502 ... P55072 33402676
    1284 7jy6:A (2.5) BS04 AGS ? GO:0000725 ... P0A7G6 33057191
    1285 7jy6:A (2.5) BS05 AGS ? GO:0000725 ... P0A7G6 33057191
    1286 7jy6:B (2.5) BS03 AGS ? GO:0000725 ... P0A7G6 33057191
    1287 7jy6:B (2.5) BS04 AGS ? GO:0000725 ... P0A7G6 33057191
    1288 7jy6:C (2.5) BS03 AGS ? GO:0000725 ... P0A7G6 33057191
    1289 7jy6:C (2.5) BS04 AGS ? GO:0000725 ... P0A7G6 33057191
    1290 7jy6:D (2.5) BS03 AGS ? GO:0000725 ... P0A7G6 33057191
    1291 7jy6:D (2.5) BS04 AGS ? GO:0000725 ... P0A7G6 33057191
    1292 7jy6:E (2.5) BS03 AGS ? GO:0000725 ... P0A7G6 33057191
    1293 7jy6:E (2.5) BS04 AGS ? GO:0000725 ... P0A7G6 33057191
    1294 7jy6:F (2.5) BS03 AGS ? GO:0000725 ... P0A7G6 33057191
    1295 7jy6:F (2.5) BS04 AGS ? GO:0000725 ... P0A7G6 33057191
    1296 7jy6:G (2.5) BS03 AGS ? GO:0000725 ... P0A7G6 33057191
    1297 7jy6:G (2.5) BS04 AGS ? GO:0000725 ... P0A7G6 33057191
    1298 7jy6:H (2.5) BS03 AGS ? GO:0000725 ... P0A7G6 33057191
    1299 7jy6:H (2.5) BS04 AGS ? GO:0000725 ... P0A7G6 33057191
    1300 7jy6:I (2.5) BS03 AGS ? GO:0000725 ... P0A7G6 33057191
    1301 7jy7:A (2.9) BS02 AGS ? GO:0000725 ... P0A7G6 33057191
    1302 7jy7:A (2.9) BS03 AGS ? GO:0000725 ... P0A7G6 33057191
    1303 7jy7:B (2.9) BS02 AGS ? GO:0000725 ... P0A7G6 33057191
    1304 7jy7:B (2.9) BS03 AGS ? GO:0000725 ... P0A7G6 33057191
    1305 7jy7:C (2.9) BS05 AGS ? GO:0000725 ... P0A7G6 33057191
    1306 7jy7:C (2.9) BS06 AGS ? GO:0000725 ... P0A7G6 33057191
    1307 7jy7:D (2.9) BS05 AGS ? GO:0000725 ... P0A7G6 33057191
    1308 7jy7:D (2.9) BS06 AGS ? GO:0000725 ... P0A7G6 33057191
    1309 7jy7:E (2.9) BS03 AGS ? GO:0000725 ... P0A7G6 33057191
    1310 7jy7:E (2.9) BS04 AGS ? GO:0000725 ... P0A7G6 33057191
    1311 7jy7:F (2.9) BS04 AGS ? GO:0000725 ... P0A7G6 33057191
    1312 7jy7:F (2.9) BS05 AGS ? GO:0000725 ... P0A7G6 33057191
    1313 7jy7:G (2.9) BS02 AGS ? GO:0000725 ... P0A7G6 33057191
    1314 7jy7:G (2.9) BS03 AGS ? GO:0000725 ... P0A7G6 33057191
    1315 7jy7:H (2.9) BS03 AGS ? GO:0000725 ... P0A7G6 33057191
    1316 7jy7:H (2.9) BS04 AGS ? GO:0000725 ... P0A7G6 33057191
    1317 7jy7:I (2.9) BS02 AGS ? GO:0000725 ... P0A7G6 33057191
    1318 7jy8:A (2.4) BS02 AGS ? GO:0000725 ... P0A7G6 33057191
    1319 7jy8:A (2.4) BS03 AGS ? GO:0000725 ... P0A7G6 33057191
    1320 7jy8:B (2.4) BS02 AGS ? GO:0000725 ... P0A7G6 33057191
    1321 7jy8:B (2.4) BS03 AGS ? GO:0000725 ... P0A7G6 33057191
    1322 7jy8:C (2.4) BS03 AGS ? GO:0000725 ... P0A7G6 33057191
    1323 7jy8:C (2.4) BS04 AGS ? GO:0000725 ... P0A7G6 33057191
    1324 7jy8:D (2.4) BS03 AGS ? GO:0000725 ... P0A7G6 33057191
    1325 7jy8:D (2.4) BS04 AGS ? GO:0000725 ... P0A7G6 33057191
    1326 7jy8:E (2.4) BS02 AGS ? GO:0000725 ... P0A7G6 33057191
    1327 7jy8:E (2.4) BS03 AGS ? GO:0000725 ... P0A7G6 33057191
    1328 7jy8:F (2.4) BS02 AGS ? GO:0000725 ... P0A7G6 33057191
    1329 7jy8:F (2.4) BS03 AGS ? GO:0000725 ... P0A7G6 33057191
    1330 7jy8:G (2.4) BS02 AGS ? GO:0000725 ... P0A7G6 33057191
    1331 7jy8:G (2.4) BS03 AGS ? GO:0000725 ... P0A7G6 33057191
    1332 7jy8:H (2.4) BS02 AGS ? GO:0000725 ... P0A7G6 33057191
    1333 7jy8:H (2.4) BS03 AGS ? GO:0000725 ... P0A7G6 33057191
    1334 7jy8:I (2.4) BS02 AGS ? GO:0000725 ... P0A7G6 33057191
    1335 7jy9:A (2.7) BS03 AGS ? GO:0000725 ... P0A7G6 33057191
    1336 7jy9:A (2.7) BS04 AGS ? GO:0000725 ... P0A7G6 33057191
    1337 7jy9:B (2.7) BS02 AGS ? GO:0000725 ... P0A7G6 33057191
    1338 7jy9:B (2.7) BS03 AGS ? GO:0000725 ... P0A7G6 33057191
    1339 7jy9:C (2.7) BS04 AGS ? GO:0000725 ... P0A7G6 33057191
    1340 7jy9:C (2.7) BS05 AGS ? GO:0000725 ... P0A7G6 33057191
    1341 7jy9:D (2.7) BS04 AGS ? GO:0000725 ... P0A7G6 33057191
    1342 7jy9:D (2.7) BS05 AGS ? GO:0000725 ... P0A7G6 33057191
    1343 7jy9:E (2.7) BS03 AGS ? GO:0000725 ... P0A7G6 33057191
    1344 7jy9:E (2.7) BS04 AGS ? GO:0000725 ... P0A7G6 33057191
    1345 7jy9:F (2.7) BS02 AGS ? GO:0000725 ... P0A7G6 33057191
    1346 7jy9:F (2.7) BS03 AGS ? GO:0000725 ... P0A7G6 33057191
    1347 7jy9:G (2.7) BS04 AGS ? GO:0000725 ... P0A7G6 33057191
    1348 7jy9:G (2.7) BS05 AGS ? GO:0000725 ... P0A7G6 33057191
    1349 7jy9:H (2.7) BS02 AGS ? GO:0000725 ... P0A7G6 33057191
    1350 7jy9:H (2.7) BS03 AGS ? GO:0000725 ... P0A7G6 33057191
    1351 7jy9:I (2.7) BS02 AGS ? GO:0000725 ... P0A7G6 33057191
    1352 7l6n:A (7.0) BS02 AGS ? GO:0005524 ... P9WPD1 34038719
    1353 7l6n:A (7.0) BS03 AGS ? GO:0005524 ... P9WPD1 34038719
    1354 7l6n:B (7.0) BS02 AGS ? GO:0005524 ... P9WPD1 34038719
    1355 7l6n:B (7.0) BS03 AGS ? GO:0005524 ... P9WPD1 34038719
    1356 7l6n:C (7.0) BS02 AGS ? GO:0005524 ... P9WPD1 34038719
    1357 7l6n:C (7.0) BS03 AGS ? GO:0005524 ... P9WPD1 34038719
    1358 7l6n:C (7.0) BS04 AGS ? GO:0005524 ... P9WPD1 34038719
    1359 7l6n:D (7.0) BS02 AGS ? GO:0005524 ... P9WPD1 34038719
    1360 7l6n:D (7.0) BS03 AGS ? GO:0005524 ... P9WPD1 34038719
    1361 7l6n:D (7.0) BS04 AGS ? GO:0005524 ... P9WPD1 34038719
    1362 7l6n:D (7.0) BS05 AGS ? GO:0005524 ... P9WPD1 34038719
    1363 7l6n:E (7.0) BS02 AGS ? GO:0005524 ... P9WPD1 34038719
    1364 7l6n:F (7.0) BS01 AGS ? GO:0005524 ... P9WPD1 34038719
    1365 7l9p:A (3.6) BS01 AGS ? GO:0001556 ... Q15645 33597306
    1366 7l9p:B (3.6) BS01 AGS ? GO:0001556 ... Q15645 33597306
    1367 7l9p:C (3.6) BS01 AGS ? GO:0001556 ... Q15645 33597306
    1368 7l9p:D (3.6) BS01 AGS ? GO:0001556 ... Q15645 33597306
    1369 7l9p:E (3.6) BS01 AGS ? GO:0001556 ... Q15645 33597306
    1370 7m99:A (3.2) BS01 AGS N/A N/A N/A 34385391
    1371 7m99:B (3.2) BS01 AGS N/A N/A N/A 34385391
    1372 7m99:C (3.2) BS01 AGS N/A N/A N/A 34385391
    1373 7m99:C (3.2) BS02 AGS N/A N/A N/A 34385391
    1374 7m99:D (3.2) BS01 AGS N/A N/A N/A 34385391
    1375 7m99:D (3.2) BS02 AGS N/A N/A N/A 34385391
    1376 7m99:E (3.2) BS01 AGS N/A N/A N/A 34385391
    1377 7m99:F (3.2) BS02 AGS N/A N/A N/A 34385391
    1378 7m99:G (3.2) BS01 AGS N/A N/A N/A 34385391
    1379 7m99:H (3.2) BS01 AGS N/A N/A N/A 34385391
    1380 7mca:A (3.6) BS03 AGS ? GO:0003677 ... P54784 34162887
    1381 7mca:D (3.6) BS02 AGS ? GO:0000808 ... P54791 34162887
    1382 7mca:D (3.6) BS03 AGS ? GO:0000808 ... P54791 34162887
    1383 7mca:E (3.6) BS03 AGS ? GO:0000808 ... P50874 34162887
    1384 7mca:I (3.6) BS01 AGS ? GO:0000082 ... P09119 34162887
    1385 7nfy:A (3.9) BS02 AGS 3.4.21.53 GO:0004176 ... P36776 35870450
    1386 7nfy:B (3.9) BS02 AGS 3.4.21.53 GO:0004176 ... P36776 35870450
    1387 7nfy:C (3.9) BS02 AGS 3.4.21.53 GO:0004176 ... P36776 35870450
    1388 7nfy:D (3.9) BS01 AGS 3.4.21.53 GO:0004176 ... P36776 35870450
    1389 7nfy:F (3.9) BS01 AGS 3.4.21.53 GO:0004176 ... P36776 35870450
    1390 7ngc:A (7.5) BS02 AGS 3.4.21.53 GO:0004176 ... P36776 35870450
    1391 7ngc:B (7.5) BS02 AGS 3.4.21.53 GO:0004176 ... P36776 35870450
    1392 7ngc:C (7.5) BS02 AGS 3.4.21.53 GO:0004176 ... P36776 35870450
    1393 7ngc:E (7.5) BS01 AGS 3.4.21.53 GO:0004176 ... P36776 35870450
    1394 7ngc:F (7.5) BS01 AGS 3.4.21.53 GO:0004176 ... P36776 35870450
    1395 7ni6:A (2.8) BS02 AGS 2.7.11.1 GO:0000077 ... Q13315 34556870
    1396 7ni6:B (2.8) BS02 AGS 2.7.11.1 GO:0000077 ... Q13315 34556870
    1397 7nku:A (3.4) BS01 AGS 3.6.4.10 GO:0005515 ... P32794 34108481
    1398 7nku:A (3.4) BS02 AGS 3.6.4.10 GO:0005515 ... P32794 34108481
    1399 7nku:B (3.4) BS01 AGS 3.6.4.10 GO:0005515 ... P32794 34108481
    1400 7nku:B (3.4) BS02 AGS 3.6.4.10 GO:0005515 ... P32794 34108481

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218