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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 2564 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    601 5vy9:D (6.7) BS02 AGS ? GO:0005515 ... P31539 28619716
    602 5vy9:D (6.7) BS03 AGS ? GO:0005515 ... P31539 28619716
    603 5vy9:E (6.7) BS02 AGS ? GO:0005515 ... P31539 28619716
    604 5vy9:E (6.7) BS03 AGS ? GO:0005515 ... P31539 28619716
    605 5vy9:F (6.7) BS01 AGS ? GO:0005515 ... P31539 28619716
    606 5vy9:F (6.7) BS02 AGS ? GO:0005515 ... P31539 28619716
    607 5vy9:F (6.7) BS03 AGS ? GO:0005515 ... P31539 28619716
    608 5vya:A (4.0) BS02 AGS ? GO:0005515 ... P31539 28619716
    609 5vya:A (4.0) BS03 AGS ? GO:0005515 ... P31539 28619716
    610 5vya:A (4.0) BS04 AGS ? GO:0005515 ... P31539 28619716
    611 5vya:B (4.0) BS02 AGS ? GO:0005515 ... P31539 28619716
    612 5vya:B (4.0) BS03 AGS ? GO:0005515 ... P31539 28619716
    613 5vya:C (4.0) BS02 AGS ? GO:0005515 ... P31539 28619716
    614 5vya:C (4.0) BS03 AGS ? GO:0005515 ... P31539 28619716
    615 5vya:C (4.0) BS04 AGS ? GO:0005515 ... P31539 28619716
    616 5vya:D (4.0) BS02 AGS ? GO:0005515 ... P31539 28619716
    617 5vya:D (4.0) BS03 AGS ? GO:0005515 ... P31539 28619716
    618 5vya:D (4.0) BS04 AGS ? GO:0005515 ... P31539 28619716
    619 5vya:E (4.0) BS02 AGS ? GO:0005515 ... P31539 28619716
    620 5vya:E (4.0) BS03 AGS ? GO:0005515 ... P31539 28619716
    621 5vya:E (4.0) BS04 AGS ? GO:0005515 ... P31539 28619716
    622 5vya:F (4.0) BS02 AGS ? GO:0005515 ... P31539 28619716
    623 5vya:F (4.0) BS03 AGS ? GO:0005515 ... P31539 28619716
    624 5xg3:A (3.5) BS01 AGS ? N/A P51834 28689660
    625 5xg3:A (3.5) BS04 AGS ? N/A P51834 28689660
    626 5xg3:B (3.5) BS01 AGS ? N/A P51834 28689660
    627 5xg3:B (3.5) BS02 AGS ? N/A P51834 28689660
    628 5ykf:A (4.33) BS01 AGS ? GO:0001508 ... Q61743 29594720
    629 5ykf:B (4.33) BS02 AGS ? GO:0001508 ... A0A1U7R319 29594720
    630 5ykf:C (4.33) BS01 AGS ? GO:0001508 ... Q61743 29594720
    631 5ykf:D (4.33) BS02 AGS ? GO:0001508 ... A0A1U7R319 29594720
    632 5ykf:E (4.33) BS01 AGS ? GO:0001508 ... Q61743 29594720
    633 5ykf:F (4.33) BS02 AGS ? GO:0001508 ... A0A1U7R319 29594720
    634 5ykf:G (4.33) BS01 AGS ? GO:0001508 ... Q61743 29594720
    635 5ykf:H (4.33) BS02 AGS ? GO:0001508 ... A0A1U7R319 29594720
    636 5ykg:A (4.57) BS01 AGS ? GO:0001508 ... Q61743 29594720
    637 5ykg:B (4.57) BS02 AGS ? GO:0001508 ... A0A1U7R319 29594720
    638 5ykg:C (4.57) BS01 AGS ? GO:0001508 ... Q61743 29594720
    639 5ykg:D (4.57) BS02 AGS ? GO:0001508 ... A0A1U7R319 29594720
    640 5ykg:E (4.57) BS01 AGS ? GO:0001508 ... Q61743 29594720
    641 5ykg:F (4.57) BS02 AGS ? GO:0001508 ... A0A1U7R319 29594720
    642 5ykg:G (4.57) BS01 AGS ? GO:0001508 ... Q61743 29594720
    643 5ykg:H (4.57) BS02 AGS ? GO:0001508 ... A0A1U7R319 29594720
    644 5yw7:B (4.4) BS02 AGS ? GO:0001508 ... A0A1U7R319 29594720
    645 5yw8:A (4.4) BS01 AGS ? GO:0001508 ... Q61743 29594720
    646 5yw8:B (4.4) BS01 AGS ? GO:0001508 ... A0A1U7R319 29594720
    647 5yw8:C (4.4) BS01 AGS ? GO:0001508 ... Q61743 29594720
    648 5yw8:D (4.4) BS01 AGS ? GO:0001508 ... A0A1U7R319 29594720
    649 5yw8:E (4.4) BS01 AGS ? GO:0001508 ... Q61743 29594720
    650 5yw8:F (4.4) BS01 AGS ? GO:0001508 ... A0A1U7R319 29594720
    651 5yw8:G (4.4) BS01 AGS ? GO:0001508 ... Q61743 29594720
    652 5yw8:H (4.4) BS01 AGS ? GO:0001508 ... A0A1U7R319 29594720
    653 5yw9:A (5.0) BS01 AGS ? GO:0001508 ... Q61743 29594720
    654 5yw9:B (5.0) BS01 AGS ? GO:0001508 ... A0A1U7R319 29594720
    655 5yw9:C (5.0) BS01 AGS ? GO:0001508 ... Q61743 29594720
    656 5yw9:D (5.0) BS01 AGS ? GO:0001508 ... A0A1U7R319 29594720
    657 5yw9:E (5.0) BS01 AGS ? GO:0001508 ... Q61743 29594720
    658 5yw9:F (5.0) BS01 AGS ? GO:0001508 ... A0A1U7R319 29594720
    659 5yw9:G (5.0) BS01 AGS ? GO:0001508 ... Q61743 29594720
    660 5yw9:H (5.0) BS01 AGS ? GO:0001508 ... A0A1U7R319 29594720
    661 5ywa:A (6.1) BS01 AGS ? GO:0001508 ... Q61743 29594720
    662 5ywa:B (6.1) BS01 AGS ? GO:0001508 ... A0A1U7R319 29594720
    663 5ywa:C (6.1) BS01 AGS ? GO:0001508 ... Q61743 29594720
    664 5ywa:D (6.1) BS01 AGS ? GO:0001508 ... A0A1U7R319 29594720
    665 5ywa:E (6.1) BS01 AGS ? GO:0001508 ... Q61743 29594720
    666 5ywa:F (6.1) BS01 AGS ? GO:0001508 ... A0A1U7R319 29594720
    667 5ywa:G (6.1) BS01 AGS ? GO:0001508 ... Q61743 29594720
    668 5ywa:H (6.1) BS01 AGS ? GO:0001508 ... A0A1U7R319 29594720
    669 5z69:A (2.102) BS01 AGS ? GO:0000731 ... Q8RDL3 29391496 MOAD: Kd=32uM
    670 5zqm:A (2.9) BS01 AGS 5.6.1.1 GO:0005524 ... O75449 30699360
    671 5zr1:A (3.0) BS03 AGS ? GO:0003677 ... P54784 29973722
    672 5zr1:D (3.0) BS02 AGS ? GO:0000808 ... P54791 29973722
    673 5zr1:E (3.0) BS03 AGS ? GO:0000808 ... P50874 29973722
    674 5zt1:A (3.114) BS02 AGS 7.4.2.8 GO:0005524 ... P0A1C1 30013545 PDBbind: -logKd/Ki=4.67, Kd=21.23uM
    675 6ahf:C (6.78) BS01 AGS ? GO:0005515 ... P31539 30718279
    676 6ahf:D (6.78) BS01 AGS ? GO:0005515 ... P31539 30718279
    677 6ahf:E (6.78) BS01 AGS ? GO:0005515 ... P31539 30718279
    678 6ahf:E (6.78) BS02 AGS ? GO:0005515 ... P31539 30718279
    679 6ahf:F (6.78) BS01 AGS ? GO:0005515 ... P31539 30718279
    680 6ahf:F (6.78) BS02 AGS ? GO:0005515 ... P31539 30718279
    681 6bs4:A (2.5) BS01 AGS ? GO:0005524 ... P9WKX5 31036728 MOAD: Kd=2.8uM
    PDBbind: -logKd/Ki=5.55, Kd=2.8uM
    682 6chs:D (4.3) BS01 AGS ? GO:0005524 ... G0S6Y2 29967539
    683 6chs:D (4.3) BS02 AGS ? GO:0005524 ... G0S6Y2 29967539
    684 6chs:E (4.3) BS01 AGS ? GO:0005524 ... G0S6Y2 29967539
    685 6chs:E (4.3) BS02 AGS ? GO:0005524 ... G0S6Y2 29967539
    686 6chs:F (4.3) BS01 AGS ? GO:0005524 ... G0S6Y2 29967539
    687 6chs:F (4.3) BS02 AGS ? GO:0005524 ... G0S6Y2 29967539
    688 6chs:H (4.3) BS01 AGS ? GO:0005524 ... G0S6Y2 29967539
    689 6chs:H (4.3) BS02 AGS ? GO:0005524 ... G0S6Y2 29967539
    690 6chs:I (4.3) BS01 AGS ? GO:0005524 ... G0S6Y2 29967539
    691 6chs:I (4.3) BS02 AGS ? GO:0005524 ... G0S6Y2 29967539
    692 6chs:J (4.3) BS01 AGS ? GO:0005524 ... G0S6Y2 29967539
    693 6chs:J (4.3) BS02 AGS ? GO:0005524 ... G0S6Y2 29967539
    694 6cvl:C (2.953) BS01 AGS 7.4.2.11 GO:0003824 ... P30750 30352853
    695 6cvl:C (2.953) BS02 AGS 7.4.2.11 GO:0003824 ... P30750 30352853
    696 6cvl:D (2.953) BS01 AGS 7.4.2.11 GO:0003824 ... P30750 30352853
    697 6cvl:D (2.953) BS02 AGS 7.4.2.11 GO:0003824 ... P30750 30352853
    698 6dju:A (3.8) BS02 AGS ? GO:0005524 ... P9WPD1 30257943
    699 6dju:A (3.8) BS03 AGS ? GO:0005524 ... P9WPD1 30257943
    700 6dju:B (3.8) BS02 AGS ? GO:0005524 ... P9WPD1 30257943
    701 6dju:B (3.8) BS03 AGS ? GO:0005524 ... P9WPD1 30257943
    702 6dju:B (3.8) BS04 AGS ? GO:0005524 ... P9WPD1 30257943
    703 6dju:C (3.8) BS02 AGS ? GO:0005524 ... P9WPD1 30257943
    704 6dju:C (3.8) BS03 AGS ? GO:0005524 ... P9WPD1 30257943
    705 6dju:C (3.8) BS04 AGS ? GO:0005524 ... P9WPD1 30257943
    706 6dju:D (3.8) BS02 AGS ? GO:0005524 ... P9WPD1 30257943
    707 6dju:D (3.8) BS03 AGS ? GO:0005524 ... P9WPD1 30257943
    708 6dju:D (3.8) BS04 AGS ? GO:0005524 ... P9WPD1 30257943
    709 6dju:E (3.8) BS02 AGS ? GO:0005524 ... P9WPD1 30257943
    710 6dju:F (3.8) BS01 AGS ? GO:0005524 ... P9WPD1 30257943
    711 6djv:A (3.9) BS02 AGS ? GO:0005524 ... P9WPD1 30257943
    712 6djv:A (3.9) BS03 AGS ? GO:0005524 ... P9WPD1 30257943
    713 6djv:A (3.9) BS04 AGS ? GO:0005524 ... P9WPD1 30257943
    714 6djv:B (3.9) BS02 AGS ? GO:0005524 ... P9WPD1 30257943
    715 6djv:B (3.9) BS03 AGS ? GO:0005524 ... P9WPD1 30257943
    716 6djv:B (3.9) BS04 AGS ? GO:0005524 ... P9WPD1 30257943
    717 6djv:C (3.9) BS02 AGS ? GO:0005524 ... P9WPD1 30257943
    718 6djv:C (3.9) BS03 AGS ? GO:0005524 ... P9WPD1 30257943
    719 6djv:C (3.9) BS04 AGS ? GO:0005524 ... P9WPD1 30257943
    720 6djv:D (3.9) BS02 AGS ? GO:0005524 ... P9WPD1 30257943
    721 6djv:D (3.9) BS03 AGS ? GO:0005524 ... P9WPD1 30257943
    722 6djv:D (3.9) BS04 AGS ? GO:0005524 ... P9WPD1 30257943
    723 6djv:F (3.9) BS02 AGS ? GO:0005524 ... P9WPD1 30257943
    724 6djv:F (3.9) BS03 AGS ? GO:0005524 ... P9WPD1 30257943
    725 6e10:1 (4.16) BS02 AGS ? GO:0005524 ... Q8IIJ8 30150771
    726 6e10:1 (4.16) BS03 AGS ? GO:0005524 ... Q8IIJ8 30150771
    727 6e10:2 (4.16) BS02 AGS ? GO:0005524 ... Q8IIJ8 30150771
    728 6e10:2 (4.16) BS03 AGS ? GO:0005524 ... Q8IIJ8 30150771
    729 6e10:2 (4.16) BS04 AGS ? GO:0005524 ... Q8IIJ8 30150771
    730 6e10:3 (4.16) BS02 AGS ? GO:0005524 ... Q8IIJ8 30150771
    731 6e10:3 (4.16) BS03 AGS ? GO:0005524 ... Q8IIJ8 30150771
    732 6e10:3 (4.16) BS04 AGS ? GO:0005524 ... Q8IIJ8 30150771
    733 6e10:4 (4.16) BS02 AGS ? GO:0005524 ... Q8IIJ8 30150771
    734 6e10:4 (4.16) BS03 AGS ? GO:0005524 ... Q8IIJ8 30150771
    735 6e10:4 (4.16) BS04 AGS ? GO:0005524 ... Q8IIJ8 30150771
    736 6e10:5 (4.16) BS02 AGS ? GO:0005524 ... Q8IIJ8 30150771
    737 6e10:5 (4.16) BS03 AGS ? GO:0005524 ... Q8IIJ8 30150771
    738 6e10:6 (4.16) BS02 AGS ? GO:0005524 ... Q8IIJ8 30150771
    739 6e10:6 (4.16) BS03 AGS ? GO:0005524 ... Q8IIJ8 30150771
    740 6e11:1 (4.23) BS02 AGS ? GO:0005524 ... Q8IIJ8 30150771
    741 6e11:1 (4.23) BS03 AGS ? GO:0005524 ... Q8IIJ8 30150771
    742 6e11:1 (4.23) BS04 AGS ? GO:0005524 ... Q8IIJ8 30150771
    743 6e11:2 (4.23) BS01 AGS ? GO:0005524 ... Q8IIJ8 30150771
    744 6e11:2 (4.23) BS02 AGS ? GO:0005524 ... Q8IIJ8 30150771
    745 6e11:3 (4.23) BS02 AGS ? GO:0005524 ... Q8IIJ8 30150771
    746 6e11:3 (4.23) BS03 AGS ? GO:0005524 ... Q8IIJ8 30150771
    747 6e11:4 (4.23) BS01 AGS ? GO:0005524 ... Q8IIJ8 30150771
    748 6e11:4 (4.23) BS02 AGS ? GO:0005524 ... Q8IIJ8 30150771
    749 6e11:5 (4.23) BS01 AGS ? GO:0005524 ... Q8IIJ8 30150771
    750 6e11:5 (4.23) BS02 AGS ? GO:0005524 ... Q8IIJ8 30150771
    751 6e11:6 (4.23) BS01 AGS ? GO:0005524 ... Q8IIJ8 30150771
    752 6e11:6 (4.23) BS02 AGS ? GO:0005524 ... Q8IIJ8 30150771
    753 6f0x:A (4.6) BS01 AGS ? GO:0001556 ... Q15645 29973720
    754 6f0x:B (4.6) BS01 AGS ? GO:0001556 ... Q15645 29973720
    755 6f0x:C (4.6) BS01 AGS ? GO:0001556 ... Q15645 29973720
    756 6f0x:D (4.6) BS01 AGS ? GO:0001556 ... Q15645 29973720
    757 6f0x:E (4.6) BS01 AGS ? GO:0001556 ... Q15645 29973720
    758 6hrc:A (3.3) BS01 AGS ? GO:0005524 ... O86150 30799077
    759 6hrc:A (3.3) BS02 AGS ? GO:0005524 ... O86150 30799077
    760 6hrc:B (3.3) BS01 AGS ? GO:0005524 ... O86150 30799077
    761 6hrc:B (3.3) BS02 AGS ? GO:0005524 ... O86150 30799077
    762 6hrc:C (3.3) BS01 AGS ? GO:0005524 ... O86150 30799077
    763 6hrc:C (3.3) BS03 AGS ? GO:0005524 ... O86150 30799077
    764 6hrc:D (3.3) BS01 AGS ? GO:0005524 ... O86150 30799077
    765 6hrc:D (3.3) BS02 AGS ? GO:0005524 ... O86150 30799077
    766 6hv9:2 (4.98) BS02 AGS 3.6.4.12 GO:0000727 ... P29469 30498216
    767 6hv9:3 (4.98) BS02 AGS 3.6.4.12 GO:0000727 ... P24279 30498216
    768 6hv9:5 (4.98) BS01 AGS 3.6.4.12 GO:0000727 ... P29496 30498216
    769 6hv9:5 (4.98) BS02 AGS 3.6.4.12 GO:0000727 ... P29496 30498216
    770 6j7e:A (2.4) BS01 AGS ? GO:0005524 ... G3XCV0 31268665 PDBbind: -logKd/Ki=5.04, Kd=9.2uM
    771 6jb1:A (3.3) BS01 AGS ? GO:0001508 ... Q61743 31067468
    772 6jb1:A (3.3) BS02 AGS ? GO:0001508 ... Q61743 31067468
    773 6jb1:B (3.3) BS02 AGS ? GO:0001508 ... A0A1U7R319 31067468
    774 6jb1:C (3.3) BS01 AGS ? GO:0001508 ... Q61743 31067468
    775 6jb1:C (3.3) BS02 AGS ? GO:0001508 ... Q61743 31067468
    776 6jb1:D (3.3) BS02 AGS ? GO:0001508 ... A0A1U7R319 31067468
    777 6jb1:E (3.3) BS01 AGS ? GO:0001508 ... Q61743 31067468
    778 6jb1:E (3.3) BS02 AGS ? GO:0001508 ... Q61743 31067468
    779 6jb1:F (3.3) BS02 AGS ? GO:0001508 ... A0A1U7R319 31067468
    780 6jb1:G (3.3) BS01 AGS ? GO:0001508 ... Q61743 31067468
    781 6jb1:G (3.3) BS02 AGS ? GO:0001508 ... Q61743 31067468
    782 6jb1:H (3.3) BS02 AGS ? GO:0001508 ... A0A1U7R319 31067468
    783 6jdi:A (1.95) BS01 AGS ? GO:0005524 ... G3XCV0 31268665 PDBbind: -logKd/Ki=5.11, Kd=7.8uM
    784 6jdl:A (2.249) BS01 AGS ? GO:0005524 ... G3XCV0 31268665 PDBbind: -logKd/Ki=4.89, Kd=13uM
    785 6lt4:A (4.5) BS01 AGS ? GO:0005524 ... A0A0H2ZMB9 32910525
    786 6lt4:A (4.5) BS02 AGS ? GO:0005524 ... A0A0H2ZMB9 32910525
    787 6lt4:B (4.5) BS01 AGS ? GO:0005524 ... A0A0H2ZMB9 32910525
    788 6lt4:B (4.5) BS02 AGS ? GO:0005524 ... A0A0H2ZMB9 32910525
    789 6lt4:C (4.5) BS01 AGS ? GO:0005524 ... A0A0H2ZMB9 32910525
    790 6lt4:C (4.5) BS02 AGS ? GO:0005524 ... A0A0H2ZMB9 32910525
    791 6lt4:D (4.5) BS01 AGS ? GO:0005524 ... A0A0H2ZMB9 32910525
    792 6lt4:D (4.5) BS02 AGS ? GO:0005524 ... A0A0H2ZMB9 32910525
    793 6lt4:E (4.5) BS01 AGS ? GO:0005524 ... A0A0H2ZMB9 32910525
    794 6lt4:E (4.5) BS02 AGS ? GO:0005524 ... A0A0H2ZMB9 32910525
    795 6lt4:F (4.5) BS01 AGS ? GO:0005524 ... A0A0H2ZMB9 32910525
    796 6lt4:F (4.5) BS02 AGS ? GO:0005524 ... A0A0H2ZMB9 32910525
    797 6lt4:G (4.5) BS01 AGS ? GO:0005524 ... A0A0H2ZMB9 32910525
    798 6lt4:G (4.5) BS02 AGS ? GO:0005524 ... A0A0H2ZMB9 32910525
    799 6lt4:H (4.5) BS01 AGS ? GO:0005524 ... A0A0H2ZMB9 32910525
    800 6lt4:H (4.5) BS02 AGS ? GO:0005524 ... A0A0H2ZMB9 32910525
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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