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BioLiP
Download all results in tab-seperated text for 2564 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    401 5c1a:C (3.8) BS02 AGS 3.6.4.6 GO:0000502 ... P55072 26712278
    402 5c1a:C (3.8) BS03 AGS 3.6.4.6 GO:0000502 ... P55072 26712278
    403 5c1a:D (3.8) BS01 AGS 3.6.4.6 GO:0000502 ... P55072 26712278
    404 5c1a:D (3.8) BS02 AGS 3.6.4.6 GO:0000502 ... P55072 26712278
    405 5c1a:D (3.8) BS03 AGS 3.6.4.6 GO:0000502 ... P55072 26712278
    406 5c1a:E (3.8) BS01 AGS 3.6.4.6 GO:0000502 ... P55072 26712278
    407 5c1a:E (3.8) BS02 AGS 3.6.4.6 GO:0000502 ... P55072 26712278
    408 5c1a:E (3.8) BS03 AGS 3.6.4.6 GO:0000502 ... P55072 26712278
    409 5c1a:F (3.8) BS01 AGS 3.6.4.6 GO:0000502 ... P55072 26712278
    410 5c1a:F (3.8) BS02 AGS 3.6.4.6 GO:0000502 ... P55072 26712278
    411 5c1a:F (3.8) BS03 AGS 3.6.4.6 GO:0000502 ... P55072 26712278
    412 5c1a:G (3.8) BS01 AGS 3.6.4.6 GO:0000502 ... P55072 26712278
    413 5c1a:G (3.8) BS02 AGS 3.6.4.6 GO:0000502 ... P55072 26712278
    414 5c1a:G (3.8) BS03 AGS 3.6.4.6 GO:0000502 ... P55072 26712278
    415 5c1a:H (3.8) BS01 AGS 3.6.4.6 GO:0000502 ... P55072 26712278
    416 5c1a:H (3.8) BS02 AGS 3.6.4.6 GO:0000502 ... P55072 26712278
    417 5c1a:H (3.8) BS03 AGS 3.6.4.6 GO:0000502 ... P55072 26712278
    418 5c1a:I (3.8) BS01 AGS 3.6.4.6 GO:0000502 ... P55072 26712278
    419 5c1a:I (3.8) BS02 AGS 3.6.4.6 GO:0000502 ... P55072 26712278
    420 5c1a:I (3.8) BS03 AGS 3.6.4.6 GO:0000502 ... P55072 26712278
    421 5c1a:J (3.8) BS01 AGS 3.6.4.6 GO:0000502 ... P55072 26712278
    422 5c1a:J (3.8) BS02 AGS 3.6.4.6 GO:0000502 ... P55072 26712278
    423 5c1a:J (3.8) BS03 AGS 3.6.4.6 GO:0000502 ... P55072 26712278
    424 5c1a:K (3.8) BS01 AGS 3.6.4.6 GO:0000502 ... P55072 26712278
    425 5c1a:K (3.8) BS02 AGS 3.6.4.6 GO:0000502 ... P55072 26712278
    426 5c1a:L (3.8) BS01 AGS 3.6.4.6 GO:0000502 ... P55072 26712278
    427 5c1a:L (3.8) BS02 AGS 3.6.4.6 GO:0000502 ... P55072 26712278
    428 5c1a:L (3.8) BS03 AGS 3.6.4.6 GO:0000502 ... P55072 26712278
    429 5c1b:A (3.08) BS02 AGS 3.6.4.6 GO:0000502 ... P55072 26712280
    430 5c1b:A (3.08) BS03 AGS 3.6.4.6 GO:0000502 ... P55072 26712280
    431 5c1b:A (3.08) BS05 AGS 3.6.4.6 GO:0000502 ... P55072 26712280
    432 5c1b:B (3.08) BS01 AGS 3.6.4.6 GO:0000502 ... P55072 26712280
    433 5c1b:B (3.08) BS02 AGS 3.6.4.6 GO:0000502 ... P55072 26712280
    434 5c1b:B (3.08) BS03 AGS 3.6.4.6 GO:0000502 ... P55072 26712280
    435 5c1b:C (3.08) BS01 AGS 3.6.4.6 GO:0000502 ... P55072 26712280
    436 5c1b:C (3.08) BS02 AGS 3.6.4.6 GO:0000502 ... P55072 26712280
    437 5c1b:C (3.08) BS03 AGS 3.6.4.6 GO:0000502 ... P55072 26712280
    438 5c1b:D (3.08) BS02 AGS 3.6.4.6 GO:0000502 ... P55072 26712280
    439 5c1b:D (3.08) BS03 AGS 3.6.4.6 GO:0000502 ... P55072 26712280
    440 5c1b:D (3.08) BS04 AGS 3.6.4.6 GO:0000502 ... P55072 26712280
    441 5c1b:E (3.08) BS01 AGS 3.6.4.6 GO:0000502 ... P55072 26712280
    442 5c1b:E (3.08) BS02 AGS 3.6.4.6 GO:0000502 ... P55072 26712280
    443 5c1b:E (3.08) BS03 AGS 3.6.4.6 GO:0000502 ... P55072 26712280
    444 5c1b:F (3.08) BS01 AGS 3.6.4.6 GO:0000502 ... P55072 26712280
    445 5c1b:F (3.08) BS02 AGS 3.6.4.6 GO:0000502 ... P55072 26712280
    446 5c1b:F (3.08) BS03 AGS 3.6.4.6 GO:0000502 ... P55072 26712280
    447 5da9:A (3.0) BS02 AGS 3.6.-.- GO:0006302 ... G0SHW7 26896444
    448 5da9:A (3.0) BS03 AGS 3.6.-.- GO:0006302 ... G0SHW7 26896444
    449 5da9:B (3.0) BS01 AGS 3.6.-.- GO:0006302 ... G0SHW7 26896444
    450 5da9:B (3.0) BS03 AGS 3.6.-.- GO:0006302 ... G0SHW7 26896444
    451 5dac:A (2.503) BS03 AGS 3.6.-.- GO:0006302 ... G0SHW7 26896444
    452 5dac:A (2.503) BS05 AGS 3.6.-.- GO:0006302 ... G0SHW7 26896444
    453 5dac:B (2.503) BS01 AGS 3.6.-.- GO:0006302 ... G0SHW7 26896444
    454 5dac:B (2.503) BS03 AGS 3.6.-.- GO:0006302 ... G0SHW7 26896444
    455 5dny:B (3.11) BS02 AGS ? GO:0006302 ... Q58718 26717941
    456 5dny:B (3.11) BS03 AGS ? GO:0006302 ... Q58718 26717941
    457 5dny:D (3.11) BS03 AGS ? GO:0006302 ... Q58718 26717941
    458 5dny:D (3.11) BS04 AGS ? GO:0006302 ... Q58718 26717941
    459 5exs:A (2.5) BS01 AGS ? GO:0005524 ... G3XCV0 26712005
    460 5f3w:B (3.11) BS02 AGS ? GO:0006302 ... Q58718 26717941
    461 5f3w:B (3.11) BS03 AGS ? GO:0006302 ... Q58718 26717941
    462 5f3w:D (3.11) BS03 AGS ? GO:0006302 ... Q58718 26717941
    463 5f3w:D (3.11) BS04 AGS ? GO:0006302 ... Q58718 26717941
    464 5ftm:A (3.2) BS01 AGS 3.6.4.6 GO:0000502 ... P55072 26822609
    465 5ftm:A (3.2) BS03 AGS 3.6.4.6 GO:0000502 ... P55072 26822609
    466 5ftm:B (3.2) BS01 AGS 3.6.4.6 GO:0000502 ... P55072 26822609
    467 5ftm:B (3.2) BS03 AGS 3.6.4.6 GO:0000502 ... P55072 26822609
    468 5ftm:C (3.2) BS01 AGS 3.6.4.6 GO:0000502 ... P55072 26822609
    469 5ftm:C (3.2) BS03 AGS 3.6.4.6 GO:0000502 ... P55072 26822609
    470 5ftm:D (3.2) BS01 AGS 3.6.4.6 GO:0000502 ... P55072 26822609
    471 5ftm:D (3.2) BS03 AGS 3.6.4.6 GO:0000502 ... P55072 26822609
    472 5ftm:E (3.2) BS01 AGS 3.6.4.6 GO:0000502 ... P55072 26822609
    473 5ftm:E (3.2) BS03 AGS 3.6.4.6 GO:0000502 ... P55072 26822609
    474 5ftm:F (3.2) BS01 AGS 3.6.4.6 GO:0000502 ... P55072 26822609
    475 5ftm:F (3.2) BS02 AGS 3.6.4.6 GO:0000502 ... P55072 26822609
    476 5ftn:A (3.3) BS01 AGS 3.6.4.6 GO:0000502 ... P55072 26822609
    477 5ftn:A (3.3) BS02 AGS 3.6.4.6 GO:0000502 ... P55072 26822609
    478 5ftn:B (3.3) BS01 AGS 3.6.4.6 GO:0000502 ... P55072 26822609
    479 5ftn:B (3.3) BS02 AGS 3.6.4.6 GO:0000502 ... P55072 26822609
    480 5ftn:C (3.3) BS01 AGS 3.6.4.6 GO:0000502 ... P55072 26822609
    481 5ftn:C (3.3) BS02 AGS 3.6.4.6 GO:0000502 ... P55072 26822609
    482 5ftn:D (3.3) BS01 AGS 3.6.4.6 GO:0000502 ... P55072 26822609
    483 5ftn:D (3.3) BS02 AGS 3.6.4.6 GO:0000502 ... P55072 26822609
    484 5ftn:E (3.3) BS01 AGS 3.6.4.6 GO:0000502 ... P55072 26822609
    485 5ftn:E (3.3) BS02 AGS 3.6.4.6 GO:0000502 ... P55072 26822609
    486 5ftn:F (3.3) BS01 AGS 3.6.4.6 GO:0000502 ... P55072 26822609
    487 5ftn:F (3.3) BS02 AGS 3.6.4.6 GO:0000502 ... P55072 26822609
    488 5gmd:A (1.5) BS02 AGS 4.1.1.33 GO:0004163 ... Q97UL5 28003359
    489 5grb:A (2.803) BS01 AGS 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15    		 GO:0003723 ... B9VUU3 N/A
    490 5grb:B (2.803) BS01 AGS 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15    		 GO:0003723 ... B9VUU3 N/A
    491 5grb:C (2.803) BS01 AGS 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15    		 GO:0003723 ... B9VUU3 N/A
    492 5grb:D (2.803) BS01 AGS 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15    		 GO:0003723 ... B9VUU3 N/A
    493 5grb:E (2.803) BS01 AGS 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15    		 GO:0003723 ... B9VUU3 N/A
    494 5grb:F (2.803) BS01 AGS 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15    		 GO:0003723 ... B9VUU3 N/A
    495 5h68:A (1.975) BS01 AGS N/A N/A N/A 28286005
    496 5h68:A (1.975) BS03 AGS N/A N/A N/A 28286005
    497 5h68:B (1.975) BS01 AGS N/A N/A N/A 28286005
    498 5h68:B (1.975) BS02 AGS N/A N/A N/A 28286005
    499 5i9v:A (1.458) BS01 AGS 2.7.10.1 GO:0004672 ... P29317 27768280
    500 5it5:A (2.648) BS01 AGS ? N/A Q5SLC9 27667690
    501 5it5:B (2.648) BS01 AGS ? N/A Q5SLC9 27667690
    502 5it5:C (2.648) BS01 AGS ? N/A Q5SLC9 27667690
    503 5it5:D (2.648) BS01 AGS ? N/A Q5SLC9 27667690
    504 5it5:E (2.648) BS01 AGS ? N/A Q5SLC9 27667690
    505 5l6w:L (2.53) BS01 AGS 2.7.11.1 GO:0004672 ... P53667 N/A
    506 5mtv:A (2.79) BS01 AGS ? GO:0005509 ... Q9EQP2 28228524 PDBbind: -logKd/Ki=4.11, Kd=77uM
    507 5nzz:E (2.6) BS01 AGS 2.7.11.24 GO:0000077 ... P47811 30135318
    508 5nzz:F (2.6) BS01 AGS 2.7.11.24 GO:0000077 ... P47811 30135318
    509 5nzz:G (2.6) BS01 AGS 2.7.11.24 GO:0000077 ... P47811 30135318
    510 5nzz:H (2.6) BS01 AGS 2.7.11.24 GO:0000077 ... P47811 30135318
    511 5o0y:A (2.86) BS01 AGS 2.7.11.1 GO:0004672 ... Q86UE8 29955062
    512 5o6d:A (3.283) BS03 AGS 3.6.4.12 GO:0000723 ... P07271 29202194
    513 5o6d:B (3.283) BS02 AGS 3.6.4.12 GO:0000723 ... P07271 29202194
    514 5oea:A (3.0) BS01 AGS ? GO:0000166 ... E5DV50 29069443
    515 5oea:B (3.0) BS01 AGS ? GO:0000166 ... E5DV50 29069443
    516 5oea:D (3.0) BS01 AGS ? GO:0000166 ... E5DV50 29069443
    517 5oea:E (3.0) BS01 AGS ? GO:0000166 ... E5DV50 29069443
    518 5ofo:A (4.6) BS01 AGS ? GO:0005524 ... P0ABH9
    P63284    		 28798962
    519 5ofo:B (4.6) BS01 AGS ? GO:0005524 ... P0ABH9
    P63284    		 28798962
    520 5ofo:B (4.6) BS02 AGS ? GO:0005524 ... P0ABH9
    P63284    		 28798962
    521 5ofo:C (4.6) BS01 AGS ? GO:0005524 ... P0ABH9
    P63284    		 28798962
    522 5ofo:C (4.6) BS02 AGS ? GO:0005524 ... P0ABH9
    P63284    		 28798962
    523 5ofo:C (4.6) BS03 AGS ? GO:0005524 ... P0ABH9
    P63284    		 28798962
    524 5ofo:D (4.6) BS01 AGS ? GO:0005524 ... P0ABH9
    P63284    		 28798962
    525 5ofo:D (4.6) BS02 AGS ? GO:0005524 ... P0ABH9
    P63284    		 28798962
    526 5ofo:E (4.6) BS01 AGS ? GO:0005524 ... P0ABH9
    P63284    		 28798962
    527 5ofo:E (4.6) BS02 AGS ? GO:0005524 ... P0ABH9
    P63284    		 28798962
    528 5ofo:E (4.6) BS03 AGS ? GO:0005524 ... P0ABH9
    P63284    		 28798962
    529 5ofo:F (4.6) BS01 AGS ? GO:0005524 ... P0ABH9
    P63284    		 28798962
    530 5ofo:F (4.6) BS02 AGS ? GO:0005524 ... P0ABH9
    P63284    		 28798962
    531 5og1:A (4.5) BS01 AGS ? GO:0005524 ... P0ABH9
    P63284    		 28798962
    532 5og1:B (4.5) BS01 AGS ? GO:0005524 ... P0ABH9
    P63284    		 28798962
    533 5og1:B (4.5) BS02 AGS ? GO:0005524 ... P0ABH9
    P63284    		 28798962
    534 5og1:C (4.5) BS01 AGS ? GO:0005524 ... P0ABH9
    P63284    		 28798962
    535 5og1:C (4.5) BS02 AGS ? GO:0005524 ... P0ABH9
    P63284    		 28798962
    536 5og1:C (4.5) BS03 AGS ? GO:0005524 ... P0ABH9
    P63284    		 28798962
    537 5og1:D (4.5) BS01 AGS ? GO:0005524 ... P0ABH9
    P63284    		 28798962
    538 5og1:D (4.5) BS02 AGS ? GO:0005524 ... P0ABH9
    P63284    		 28798962
    539 5og1:E (4.5) BS01 AGS ? GO:0005524 ... P0ABH9
    P63284    		 28798962
    540 5og1:E (4.5) BS02 AGS ? GO:0005524 ... P0ABH9
    P63284    		 28798962
    541 5v8f:2 (3.9) BS01 AGS 3.6.4.12 GO:0000727 ... P29469 28191893
    542 5v8f:3 (3.9) BS01 AGS 3.6.4.12 GO:0000727 ... P24279 28191893
    543 5v8f:4 (3.9) BS02 AGS 3.6.4.12 GO:0000727 ... P30665 28191893
    544 5v8f:4 (3.9) BS03 AGS 3.6.4.12 GO:0000727 ... P30665 28191893
    545 5v8f:6 (3.9) BS02 AGS 3.6.4.12 GO:0000727 ... P53091 28191893
    546 5v8f:6 (3.9) BS03 AGS 3.6.4.12 GO:0000727 ... P53091 28191893
    547 5v8f:7 (3.9) BS01 AGS 3.6.4.12 GO:0000727 ... P38132 28191893
    548 5v8f:7 (3.9) BS02 AGS 3.6.4.12 GO:0000727 ... P38132 28191893
    549 5v8f:9 (3.9) BS02 AGS ? GO:0000082 ... P09119 28191893
    550 5v8f:A (3.9) BS01 AGS ? GO:0003677 ... P54784 28191893
    551 5v8f:D (3.9) BS01 AGS ? GO:0000808 ... P54791 28191893
    552 5v8f:E (3.9) BS01 AGS ? GO:0000808 ... P50874 28191893
    553 5vfp:A (4.2) BS01 AGS ? GO:0000502 ... P35998 29636472
    554 5vfp:A (4.2) BS02 AGS ? GO:0000502 ... P35998 29636472
    555 5vfp:B (4.2) BS01 AGS ? GO:0005524 ... P62191 29636472
    556 5vfp:D (4.2) BS01 AGS ? GO:0000502 ... P43686 29636472
    557 5vfp:E (4.2) BS01 AGS ? GO:0000502 ... P62333 29636472
    558 5vfp:E (4.2) BS02 AGS ? GO:0000502 ... P62333 29636472
    559 5vfp:F (4.2) BS01 AGS ? GO:0000502 ... P17980 29636472
    560 5vfp:F (4.2) BS02 AGS ? GO:0000502 ... P17980 29636472
    561 5vfq:A (4.2) BS01 AGS ? GO:0000502 ... P35998 29636472
    562 5vfq:B (4.2) BS01 AGS ? GO:0005524 ... P62191 29636472
    563 5vfq:C (4.2) BS01 AGS ? GO:0000502 ... P62195 29636472
    564 5vfq:D (4.2) BS01 AGS ? GO:0000502 ... P43686 29636472
    565 5vfq:D (4.2) BS02 AGS ? GO:0000502 ... P43686 29636472
    566 5vfq:F (4.2) BS01 AGS ? GO:0000502 ... P17980 29636472
    567 5vfr:A (4.9) BS01 AGS ? GO:0000502 ... P35998 29636472
    568 5vfr:B (4.9) BS01 AGS ? GO:0005524 ... P62191 29636472
    569 5vfr:D (4.9) BS01 AGS ? GO:0000502 ... P43686 29636472
    570 5vfr:E (4.9) BS01 AGS ? GO:0000502 ... P62333 29636472
    571 5vfr:F (4.9) BS01 AGS ? GO:0000502 ... P17980 29636472
    572 5vfs:A (3.6) BS01 AGS ? GO:0000502 ... P35998 29636472
    573 5vfs:A (3.6) BS02 AGS ? GO:0000502 ... P35998 29636472
    574 5vfs:B (3.6) BS01 AGS ? GO:0005524 ... P62191 29636472
    575 5vfs:C (3.6) BS01 AGS ? GO:0000502 ... P62195 29636472
    576 5vfs:D (3.6) BS01 AGS ? GO:0000502 ... P43686 29636472
    577 5vfs:E (3.6) BS01 AGS ? GO:0000502 ... P62333 29636472
    578 5vfs:E (3.6) BS02 AGS ? GO:0000502 ... P62333 29636472
    579 5vfs:F (3.6) BS01 AGS ? GO:0000502 ... P17980 29636472
    580 5vfs:F (3.6) BS02 AGS ? GO:0000502 ... P17980 29636472
    581 5vjh:A (4.0) BS02 AGS ? GO:0005515 ... P31539 28619716
    582 5vjh:A (4.0) BS03 AGS ? GO:0005515 ... P31539 28619716
    583 5vjh:A (4.0) BS04 AGS ? GO:0005515 ... P31539 28619716
    584 5vjh:B (4.0) BS02 AGS ? GO:0005515 ... P31539 28619716
    585 5vjh:B (4.0) BS03 AGS ? GO:0005515 ... P31539 28619716
    586 5vjh:C (4.0) BS02 AGS ? GO:0005515 ... P31539 28619716
    587 5vjh:C (4.0) BS03 AGS ? GO:0005515 ... P31539 28619716
    588 5vjh:D (4.0) BS02 AGS ? GO:0005515 ... P31539 28619716
    589 5vjh:D (4.0) BS03 AGS ? GO:0005515 ... P31539 28619716
    590 5vjh:D (4.0) BS04 AGS ? GO:0005515 ... P31539 28619716
    591 5vjh:E (4.0) BS02 AGS ? GO:0005515 ... P31539 28619716
    592 5vjh:E (4.0) BS03 AGS ? GO:0005515 ... P31539 28619716
    593 5vjh:F (4.0) BS01 AGS ? GO:0005515 ... P31539 28619716
    594 5vjh:F (4.0) BS02 AGS ? GO:0005515 ... P31539 28619716
    595 5vy9:A (6.7) BS02 AGS ? GO:0005515 ... P31539 28619716
    596 5vy9:A (6.7) BS03 AGS ? GO:0005515 ... P31539 28619716
    597 5vy9:B (6.7) BS02 AGS ? GO:0005515 ... P31539 28619716
    598 5vy9:B (6.7) BS03 AGS ? GO:0005515 ... P31539 28619716
    599 5vy9:C (6.7) BS02 AGS ? GO:0005515 ... P31539 28619716
    600 5vy9:C (6.7) BS03 AGS ? GO:0005515 ... P31539 28619716
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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