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BioLiP
Download all results in tab-seperated text for 2564 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    2401 8seo:B (3.92) BS01 AGS ? GO:0003151 ... P11716 37192614
    2402 8seo:C (3.92) BS01 AGS ? GO:0003151 ... P11716 37192614
    2403 8seo:D (3.92) BS01 AGS ? GO:0003151 ... P11716 37192614
    2404 8sev:A (3.17) BS01 AGS ? GO:0003151 ... P11716 37192614
    2405 8sev:B (3.17) BS01 AGS ? GO:0003151 ... P11716 37192614
    2406 8sev:C (3.17) BS01 AGS ? GO:0003151 ... P11716 37192614
    2407 8sev:D (3.17) BS01 AGS ? GO:0003151 ... P11716 37192614
    2408 8sp4:A (2.401) BS01 AGS N/A N/A P60240 N/A
    2409 8thb:A (3.2) BS01 AGS ? GO:0000724 ... Q12050 38427736
    2410 8thb:B (3.2) BS01 AGS ? GO:0000077 ... P40339 38427736
    2411 8thb:B (3.2) BS02 AGS ? GO:0000077 ... P40339 38427736
    2412 8thb:C (3.2) BS01 AGS ? GO:0000077 ... P38629 38427736
    2413 8thb:D (3.2) BS01 AGS ? GO:0000076 ... P40348 38427736
    2414 8thc:A (3.67) BS01 AGS ? GO:0000724 ... Q12050 38427736
    2415 8thc:B (3.67) BS01 AGS ? GO:0000077 ... P40339 38427736
    2416 8thc:B (3.67) BS02 AGS ? GO:0000077 ... P40339 38427736
    2417 8thc:C (3.67) BS01 AGS ? GO:0000077 ... P38629 38427736
    2418 8thc:D (3.67) BS01 AGS ? GO:0000076 ... P40348 38427736
    2419 8thd:A (3.25) BS01 AGS ? GO:0000724 ... Q12050 38427736
    2420 8thd:B (3.25) BS01 AGS ? GO:0000077 ... P40339 38427736
    2421 8thd:B (3.25) BS02 AGS ? GO:0000077 ... P40339 38427736
    2422 8thd:C (3.25) BS01 AGS ? GO:0000077 ... P38629 38427736
    2423 8thd:D (3.25) BS01 AGS ? GO:0000076 ... P40348 38427736
    2424 8trg:A (2.93) BS02 AGS ? GO:0000725 ... P0A7G6 38755298
    2425 8trg:A (2.93) BS03 AGS ? GO:0000725 ... P0A7G6 38755298
    2426 8trg:B (2.93) BS02 AGS ? GO:0000725 ... P0A7G6 38755298
    2427 8trg:B (2.93) BS03 AGS ? GO:0000725 ... P0A7G6 38755298
    2428 8trg:C (2.93) BS02 AGS ? GO:0000725 ... P0A7G6 38755298
    2429 8trg:C (2.93) BS03 AGS ? GO:0000725 ... P0A7G6 38755298
    2430 8trg:D (2.93) BS02 AGS ? GO:0000725 ... P0A7G6 38755298
    2431 8trg:D (2.93) BS03 AGS ? GO:0000725 ... P0A7G6 38755298
    2432 8trg:E (2.93) BS02 AGS ? GO:0000725 ... P0A7G6 38755298
    2433 8trg:E (2.93) BS03 AGS ? GO:0000725 ... P0A7G6 38755298
    2434 8trg:F (2.93) BS02 AGS ? GO:0000725 ... P0A7G6 38755298
    2435 8trg:F (2.93) BS03 AGS ? GO:0000725 ... P0A7G6 38755298
    2436 8trg:G (2.93) BS02 AGS ? GO:0000725 ... P0A7G6 38755298
    2437 8trg:G (2.93) BS03 AGS ? GO:0000725 ... P0A7G6 38755298
    2438 8trg:H (2.93) BS02 AGS ? GO:0000725 ... P0A7G6 38755298
    2439 8tw7:2 (3.8) BS01 AGS N/A N/A P40348 N/A
    2440 8tw7:3 (3.8) BS01 AGS N/A N/A P38629 N/A
    2441 8tw7:4 (3.8) BS01 AGS N/A N/A P40339 N/A
    2442 8tw8:2 (3.5) BS01 AGS N/A N/A P40348 N/A
    2443 8tw8:3 (3.5) BS01 AGS N/A N/A P38629 N/A
    2444 8tw8:4 (3.5) BS01 AGS N/A N/A P40339 N/A
    2445 8tw8:5 (3.5) BS01 AGS N/A N/A P38251 N/A
    2446 8twa:2 (4.1) BS01 AGS N/A N/A P40348 N/A
    2447 8twa:3 (4.1) BS01 AGS N/A N/A P38629 N/A
    2448 8twa:4 (4.1) BS01 AGS N/A N/A P40339 N/A
    2449 8twa:5 (4.1) BS01 AGS N/A N/A P38251 N/A
    2450 8twb:2 (3.2) BS02 AGS N/A N/A P40348 N/A
    2451 8twb:3 (3.2) BS01 AGS N/A N/A P38629 N/A
    2452 8twb:4 (3.2) BS01 AGS N/A N/A P40339 N/A
    2453 8twb:5 (3.2) BS02 AGS N/A N/A P38251 N/A
    2454 8uae:M (3.25) BS01 AGS N/A N/A N/A 38096827
    2455 8uae:N (3.25) BS01 AGS N/A N/A N/A 38096827
    2456 8uae:O (3.25) BS01 AGS N/A N/A N/A 38096827
    2457 8uae:P (3.25) BS01 AGS N/A N/A N/A 38096827
    2458 8uae:Q (3.25) BS01 AGS N/A N/A N/A 38096827
    2459 8ui7:A (4.2) BS02 AGS ? N/A Q96QE3 38871854
    2460 8ui7:B (4.2) BS01 AGS ? GO:0003689 ... P35250 38871854
    2461 8ui7:B (4.2) BS02 AGS ? GO:0003689 ... P35250 38871854
    2462 8ui7:C (4.2) BS01 AGS ? GO:0003689 ... P40937 38871854
    2463 8ui8:A (3.1) BS02 AGS ? N/A Q96QE3 38871854
    2464 8ui8:B (3.1) BS01 AGS ? GO:0003689 ... P35250 38871854
    2465 8ui8:B (3.1) BS02 AGS ? GO:0003689 ... P35250 38871854
    2466 8ui8:C (3.1) BS01 AGS ? GO:0003689 ... P40937 38871854
    2467 8ui9:A (3.5) BS02 AGS ? N/A Q96QE3 38871854
    2468 8ui9:B (3.5) BS01 AGS ? GO:0003689 ... P35250 38871854
    2469 8ui9:C (3.5) BS01 AGS ? GO:0003689 ... P40937 38871854
    2470 8ui9:D (3.5) BS01 AGS ? GO:0003689 ... P35249 38871854
    2471 8uii:A (3.04) BS02 AGS ? GO:0003677 ... Q96QE3 38871854
    2472 8uii:B (3.04) BS01 AGS ? GO:0003689 ... P35250 38871854
    2473 8uii:B (3.04) BS02 AGS ? GO:0003689 ... P35250 38871854
    2474 8uii:C (3.04) BS01 AGS ? GO:0003689 ... P40937 38871854
    2475 8uii:D (3.04) BS01 AGS ? GO:0003689 ... P35249 38871854
    2476 8umt:B (3.33) BS01 AGS ? GO:0003677 ... P35250 38669181
    2477 8umt:C (3.33) BS02 AGS ? GO:0003677 ... P40937 38669181
    2478 8umt:D (3.33) BS01 AGS ? GO:0003677 ... P35249 38669181
    2479 8umu:A (3.16) BS01 AGS ? GO:0003677 ... Q8WVB6 38669181
    2480 8umu:B (3.16) BS01 AGS ? GO:0003677 ... P35250 38669181
    2481 8umu:B (3.16) BS02 AGS ? GO:0003677 ... P35250 38669181
    2482 8umu:C (3.16) BS01 AGS ? GO:0003677 ... P40937 38669181
    2483 8umv:A (2.75) BS03 AGS ? GO:0003677 ... Q8WVB6 38669181
    2484 8umv:B (2.75) BS02 AGS ? GO:0003677 ... P35250 38669181
    2485 8umv:B (2.75) BS03 AGS ? GO:0003677 ... P35250 38669181
    2486 8umv:C (2.75) BS02 AGS ? GO:0003677 ... P40937 38669181
    2487 8umv:C (2.75) BS03 AGS ? GO:0003677 ... P40937 38669181
    2488 8umv:D (2.75) BS02 AGS ? GO:0003677 ... P35249 38669181
    2489 8umv:D (2.75) BS03 AGS ? GO:0003677 ... P35249 38669181
    2490 8umv:E (2.75) BS02 AGS ? GO:0000731 ... P40938 38669181
    2491 8umw:A (2.93) BS03 AGS ? GO:0003677 ... Q8WVB6 38669181
    2492 8umw:B (2.93) BS01 AGS ? GO:0003677 ... P35250 38669181
    2493 8umw:B (2.93) BS02 AGS ? GO:0003677 ... P35250 38669181
    2494 8umw:C (2.93) BS02 AGS ? GO:0003677 ... P40937 38669181
    2495 8umw:C (2.93) BS03 AGS ? GO:0003677 ... P40937 38669181
    2496 8umw:D (2.93) BS02 AGS ? GO:0003677 ... P35249 38669181
    2497 8umw:D (2.93) BS04 AGS ? GO:0003677 ... P35249 38669181
    2498 8umw:E (2.93) BS02 AGS ? GO:0000731 ... P40938 38669181
    2499 8umy:A (2.83) BS03 AGS ? GO:0003677 ... Q8WVB6 38669181
    2500 8umy:B (2.83) BS02 AGS ? GO:0003677 ... P35250 38669181
    2501 8umy:B (2.83) BS04 AGS ? GO:0003677 ... P35250 38669181
    2502 8umy:C (2.83) BS02 AGS ? GO:0003677 ... P40937 38669181
    2503 8umy:C (2.83) BS03 AGS ? GO:0003677 ... P40937 38669181
    2504 8umy:D (2.83) BS02 AGS ? GO:0003677 ... P35249 38669181
    2505 8umy:D (2.83) BS04 AGS ? GO:0003677 ... P35249 38669181
    2506 8umy:E (2.83) BS02 AGS ? GO:0000731 ... P40938 38669181
    2507 8un0:A (3.0) BS03 AGS ? GO:0003677 ... Q8WVB6 38669181
    2508 8un0:B (3.0) BS03 AGS ? GO:0003677 ... P35250 38669181
    2509 8un0:B (3.0) BS04 AGS ? GO:0003677 ... P35250 38669181
    2510 8un0:C (3.0) BS02 AGS ? GO:0003677 ... P40937 38669181
    2511 8un0:C (3.0) BS03 AGS ? GO:0003677 ... P40937 38669181
    2512 8un0:D (3.0) BS02 AGS ? GO:0003677 ... P35249 38669181
    2513 8un0:D (3.0) BS04 AGS ? GO:0003677 ... P35249 38669181
    2514 8un0:E (3.0) BS02 AGS ? GO:0000731 ... P40938 38669181
    2515 8unh:B (3.21) BS01 AGS 3.6.4.- GO:0003677 ... P04526 38177685
    2516 8unh:E (3.21) BS01 AGS 3.6.4.- GO:0003677 ... P04526 38177685
    2517 8unj:B (3.35) BS02 AGS ? GO:0003677 ... P35250 38669181
    2518 8unj:C (3.35) BS01 AGS ? GO:0003677 ... P40937 38669181
    2519 8unj:D (3.35) BS01 AGS ? GO:0003677 ... P35249 38669181
    2520 8ux9:B (3.2) BS01 AGS N/A N/A N/A N/A
    2521 8ux9:B (3.2) BS02 AGS N/A N/A N/A N/A
    2522 8ux9:C (3.2) BS01 AGS N/A N/A N/A N/A
    2523 8vcj:B (3.32) BS03 AGS N/A GO:0003677 ... P05846 38834067
    2524 8vcj:C (3.32) BS02 AGS N/A GO:0003677 ... P05846 38834067
    2525 8vcj:G (3.32) BS01 AGS N/A GO:0003677 ... P05846 38834067
    2526 8vct:B (3.83) BS02 AGS N/A GO:0003677 ... P05846 38834067
    2527 8vct:C (3.83) BS02 AGS N/A GO:0003677 ... P05846 38834067
    2528 8vct:G (3.83) BS01 AGS N/A GO:0003677 ... P05846 38834067
    2529 8w6i:B (3.7) BS01 AGS ? GO:0000917 ... P0A9R7 N/A
    2530 8w6i:B (3.7) BS02 AGS ? GO:0000917 ... P0A9R7 N/A
    2531 8w6i:D (3.7) BS01 AGS ? GO:0000917 ... P0A9R7 N/A
    2532 8w6i:D (3.7) BS02 AGS ? GO:0000917 ... P0A9R7 N/A
    2533 8w7m:3 (4.12) BS03 AGS 3.6.4.12 GO:0000727 ... P24279 37730685
    2534 8w7m:4 (4.12) BS02 AGS 3.6.4.12 GO:0000727 ... P30665 37730685
    2535 8w7m:7 (4.12) BS02 AGS 3.6.4.12 GO:0000727 ... P38132 37730685
    2536 8w7m:7 (4.12) BS03 AGS 3.6.4.12 GO:0000727 ... P38132 37730685
    2537 8wiv:D (3.41) BS02 AGS N/A N/A N/A N/A
    2538 8wiv:L (3.41) BS01 AGS N/A N/A N/A N/A
    2539 8wiv:M (3.41) BS01 AGS N/A N/A N/A N/A
    2540 8wiv:O (3.41) BS01 AGS N/A N/A N/A N/A
    2541 8wj3:L (3.36) BS01 AGS N/A N/A N/A N/A
    2542 8wj3:M (3.36) BS01 AGS N/A N/A N/A N/A
    2543 8wj3:O (3.36) BS01 AGS N/A N/A N/A N/A
    2544 8wk0:D (3.34) BS01 AGS N/A N/A N/A N/A
    2545 8wk0:L (3.34) BS01 AGS N/A N/A N/A N/A
    2546 8wk0:M (3.34) BS01 AGS N/A N/A N/A N/A
    2547 8wk0:N (3.34) BS01 AGS N/A N/A N/A N/A
    2548 8wk0:O (3.34) BS01 AGS N/A N/A N/A N/A
    2549 8xay:A (2.81) BS01 AGS N/A N/A N/A 38834762
    2550 8xay:B (2.81) BS03 AGS N/A N/A N/A 38834762
    2551 8xay:C (2.81) BS03 AGS N/A N/A N/A 38834762
    2552 8xay:C (2.81) BS04 AGS N/A N/A N/A 38834762
    2553 8xay:D (2.81) BS03 AGS N/A N/A N/A 38834762
    2554 8yhw:A (2.9) BS01 AGS 2.7.11.25 GO:0004672 ... Q99558 N/A
    2555 8yhw:B (2.9) BS01 AGS 2.7.11.25 GO:0004672 ... Q99558 N/A
    2556 8yhw:C (2.9) BS01 AGS 2.7.11.25 GO:0004672 ... Q99558 N/A
    2557 8yhw:D (2.9) BS01 AGS 2.7.11.25 GO:0004672 ... Q99558 N/A
    2558 9c57:A (2.75) BS01 AGS N/A N/A Q9Y265 39088653
    2559 9c57:B (2.75) BS01 AGS N/A N/A Q9Y230 39088653
    2560 9c57:C (2.75) BS01 AGS N/A N/A Q9Y265 39088653
    2561 9c57:D (2.75) BS01 AGS N/A N/A Q9Y230 39088653
    2562 9c57:E (2.75) BS01 AGS N/A N/A Q9Y265 39088653
    2563 9c57:F (2.75) BS01 AGS N/A N/A Q9Y230 39088653
    2564 9c57:G (2.75) BS01 AGS N/A N/A Q96L91 39088653
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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