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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 2564 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    2201 8et3:C (3.7) BS02 AGS ? GO:0002020 ... P0A6H1 36730206
    2202 8et3:D (3.7) BS01 AGS ? GO:0002020 ... P0A6H1 36730206
    2203 8fs3:A (2.93) BS03 AGS ? GO:0000077 ... P32641 37205533
    2204 8fs3:B (2.93) BS02 AGS ? GO:0000077 ... P40339 37205533
    2205 8fs3:C (2.93) BS03 AGS ? GO:0000077 ... P38629 37205533
    2206 8fs3:D (2.93) BS01 AGS ? GO:0000076 ... P40348 37205533
    2207 8fs3:D (2.93) BS02 AGS ? GO:0000076 ... P40348 37205533
    2208 8fs4:A (2.94) BS03 AGS ? GO:0000077 ... P32641 37205533
    2209 8fs4:B (2.94) BS02 AGS ? GO:0000077 ... P40339 37205533
    2210 8fs4:B (2.94) BS03 AGS ? GO:0000077 ... P40339 37205533
    2211 8fs4:C (2.94) BS02 AGS ? GO:0000077 ... P38629 37205533
    2212 8fs4:D (2.94) BS01 AGS ? GO:0000076 ... P40348 37205533
    2213 8fs4:E (2.94) BS01 AGS ? GO:0000077 ... P38251 37205533
    2214 8fs5:A (2.76) BS03 AGS ? GO:0000077 ... P32641 37205533
    2215 8fs5:B (2.76) BS02 AGS ? GO:0000077 ... P40339 37205533
    2216 8fs5:B (2.76) BS03 AGS ? GO:0000077 ... P40339 37205533
    2217 8fs5:C (2.76) BS01 AGS ? GO:0000077 ... P38629 37205533
    2218 8fs5:C (2.76) BS02 AGS ? GO:0000077 ... P38629 37205533
    2219 8fs5:D (2.76) BS01 AGS ? GO:0000076 ... P40348 37205533
    2220 8fs5:E (2.76) BS01 AGS ? GO:0000077 ... P38251 37205533
    2221 8fs6:A (2.9) BS03 AGS ? GO:0000077 ... P32641 37205533
    2222 8fs6:B (2.9) BS01 AGS ? GO:0000077 ... P40339 37205533
    2223 8fs6:C (2.9) BS01 AGS ? GO:0000077 ... P38629 37205533
    2224 8fs6:D (2.9) BS01 AGS ? GO:0000076 ... P40348 37205533
    2225 8fs6:E (2.9) BS01 AGS ? GO:0000077 ... P38251 37205533
    2226 8fs7:A (2.85) BS05 AGS ? GO:0000077 ... P32641 37205533
    2227 8fs7:B (2.85) BS02 AGS ? GO:0000077 ... P40339 37205533
    2228 8fs7:C (2.85) BS02 AGS ? GO:0000077 ... P38629 37205533
    2229 8fs7:D (2.85) BS02 AGS ? GO:0000076 ... P40348 37205533
    2230 8fs7:D (2.85) BS03 AGS ? GO:0000076 ... P40348 37205533
    2231 8fs7:E (2.85) BS01 AGS ? GO:0000077 ... P38251 37205533
    2232 8fs8:A (3.04) BS04 AGS ? GO:0000077 ... P32641 37205533
    2233 8fs8:B (3.04) BS01 AGS ? GO:0000077 ... P40339 37205533
    2234 8fs8:C (3.04) BS01 AGS ? GO:0000077 ... P38629 37205533
    2235 8fs8:D (3.04) BS01 AGS ? GO:0000076 ... P40348 37205533
    2236 8fs8:D (3.04) BS02 AGS ? GO:0000076 ... P40348 37205533
    2237 8fs8:E (3.04) BS01 AGS ? GO:0000077 ... P38251 37205533
    2238 8g0z:A (3.61) BS01 AGS 3.6.4.- GO:0003677 ... P04530 37474605
    2239 8g0z:B (3.61) BS02 AGS 3.6.4.- GO:0003677 ... P04530 37474605
    2240 8g0z:B (3.61) BS03 AGS 3.6.4.- GO:0003677 ... P04530 37474605
    2241 8g0z:C (3.61) BS02 AGS 3.6.4.- GO:0003677 ... P04530 37474605
    2242 8g0z:C (3.61) BS03 AGS 3.6.4.- GO:0003677 ... P04530 37474605
    2243 8g0z:D (3.61) BS02 AGS 3.6.4.- GO:0003677 ... P04530 37474605
    2244 8g0z:D (3.61) BS03 AGS 3.6.4.- GO:0003677 ... P04530 37474605
    2245 8g0z:E (3.61) BS02 AGS 3.6.4.- GO:0003677 ... P04530 37474605
    2246 8g0z:E (3.61) BS03 AGS 3.6.4.- GO:0003677 ... P04530 37474605
    2247 8g0z:F (3.61) BS02 AGS 3.6.4.- GO:0003677 ... P04530 37474605
    2248 8g4c:B (3.1) BS01 AGS ? GO:0005524 ... O34697 37393310
    2249 8g4c:C (3.1) BS01 AGS ? GO:0005524 ... O34697 37393310
    2250 8g4d:B (3.6) BS01 AGS ? GO:0005524 ... O34697 37393310
    2251 8g4d:C (3.6) BS01 AGS ? GO:0005524 ... O34697 37393310
    2252 8gao:A (4.1) BS01 AGS 3.6.4.- GO:0003677 ... P04530 37474605
    2253 8gao:B (4.1) BS02 AGS 3.6.4.- GO:0003677 ... P04530 37474605
    2254 8gao:B (4.1) BS03 AGS 3.6.4.- GO:0003677 ... P04530 37474605
    2255 8gao:C (4.1) BS02 AGS 3.6.4.- GO:0003677 ... P04530 37474605
    2256 8gao:C (4.1) BS03 AGS 3.6.4.- GO:0003677 ... P04530 37474605
    2257 8gao:D (4.1) BS02 AGS 3.6.4.- GO:0003677 ... P04530 37474605
    2258 8gao:D (4.1) BS03 AGS 3.6.4.- GO:0003677 ... P04530 37474605
    2259 8gao:E (4.1) BS02 AGS 3.6.4.- GO:0003677 ... P04530 37474605
    2260 8gao:E (4.1) BS03 AGS 3.6.4.- GO:0003677 ... P04530 37474605
    2261 8gao:F (4.1) BS02 AGS 3.6.4.- GO:0003677 ... P04530 37474605
    2262 8giy:B (3.7) BS01 AGS 2.7.7.7 GO:0003677 ... P06710 N/A
    2263 8giy:C (3.7) BS01 AGS 2.7.7.7 GO:0003677 ... P06710 N/A
    2264 8giy:D (3.7) BS01 AGS 2.7.7.7 GO:0003677 ... P06710 N/A
    2265 8giz:B (2.7) BS01 AGS 2.7.7.7 GO:0003677 ... P06710 N/A
    2266 8giz:C (2.7) BS01 AGS 2.7.7.7 GO:0003677 ... P06710 N/A
    2267 8giz:D (2.7) BS01 AGS 2.7.7.7 GO:0003677 ... P06710 N/A
    2268 8giz:E (2.7) BS01 AGS 2.7.7.7 GO:0003677 ... P28631 N/A
    2269 8gms:F (3.31) BS03 AGS ? GO:0003677 ... A0A485JBB4 36598938
    2270 8gms:F (3.31) BS04 AGS ? GO:0003677 ... A0A485JBB4 36598938
    2271 8gms:G (3.31) BS02 AGS ? GO:0003677 ... A0A485JBB4 36598938
    2272 8gmt:F (3.31) BS03 AGS ? GO:0000725 ... P0A7G6 36598938
    2273 8gmt:F (3.31) BS04 AGS ? GO:0000725 ... P0A7G6 36598938
    2274 8gmt:G (3.31) BS03 AGS ? GO:0000725 ... P0A7G6 36598938
    2275 8gmu:F (2.78) BS02 AGS ? GO:0000725 ... P0A7G6 36598938
    2276 8gmu:F (2.78) BS03 AGS ? GO:0000725 ... P0A7G6 36598938
    2277 8gmu:G (2.78) BS02 AGS ? GO:0000725 ... P0A7G6 36598938
    2278 8h5z:A (3.00003) BS01 AGS 3.6.4.12 GO:0003677 ... P33919 36614183
    2279 8h5z:B (3.00003) BS01 AGS 3.6.4.12 GO:0003677 ... P33919 36614183
    2280 8hf4:A (2.8) BS01 AGS 3.4.22.- GO:0005524 ... A0A0H2ZPI8 37935699
    2281 8hf4:B (2.8) BS01 AGS 3.4.22.- GO:0005524 ... A0A0H2ZPI8 37935699
    2282 8hf5:A (2.9) BS01 AGS 3.4.22.- GO:0005524 ... A0A0H2ZPI8 37935699
    2283 8hf5:A (2.9) BS02 AGS 3.4.22.- GO:0005524 ... A0A0H2ZPI8 37935699
    2284 8hf5:B (2.9) BS01 AGS 3.4.22.- GO:0005524 ... A0A0H2ZPI8 37935699
    2285 8hwg:A (3.0) BS02 AGS 3.6.4.- GO:0004386 ... A0A7H0DN89 38177671
    2286 8hwg:B (3.0) BS02 AGS 3.6.4.- GO:0004386 ... A0A7H0DN89 38177671
    2287 8hwg:B (3.0) BS03 AGS 3.6.4.- GO:0004386 ... A0A7H0DN89 38177671
    2288 8hwg:C (3.0) BS02 AGS 3.6.4.- GO:0004386 ... A0A7H0DN89 38177671
    2289 8hwg:C (3.0) BS03 AGS 3.6.4.- GO:0004386 ... A0A7H0DN89 38177671
    2290 8hwg:D (3.0) BS02 AGS 3.6.4.- GO:0004386 ... A0A7H0DN89 38177671
    2291 8hwg:D (3.0) BS03 AGS 3.6.4.- GO:0004386 ... A0A7H0DN89 38177671
    2292 8hwg:E (3.0) BS02 AGS 3.6.4.- GO:0004386 ... A0A7H0DN89 38177671
    2293 8j4u:M (2.97) BS01 AGS N/A N/A N/A 38096825
    2294 8j4u:N (2.97) BS01 AGS N/A N/A N/A 38096825
    2295 8j4u:O (2.97) BS01 AGS N/A N/A N/A 38096825
    2296 8j4u:P (2.97) BS01 AGS N/A N/A N/A 38096825
    2297 8j4u:Q (2.97) BS01 AGS N/A N/A N/A 38096825
    2298 8kg6:2 (3.07) BS04 AGS 3.6.4.12 GO:0000727 ... P29469 37730685
    2299 8kg6:3 (3.07) BS03 AGS 3.6.4.12 GO:0000727 ... P24279 37730685
    2300 8kg6:4 (3.07) BS02 AGS 3.6.4.12 GO:0000727 ... P30665 37730685
    2301 8kg6:5 (3.07) BS04 AGS 3.6.4.12 GO:0000727 ... P29496 37730685
    2302 8kg6:6 (3.07) BS05 AGS 3.6.4.12 GO:0000727 ... P53091 37730685
    2303 8kg6:7 (3.07) BS03 AGS 3.6.4.12 GO:0000727 ... P38132 37730685
    2304 8kg8:2 (4.23) BS04 AGS 3.6.4.12 GO:0000727 ... P29469 37730685
    2305 8kg8:3 (4.23) BS03 AGS 3.6.4.12 GO:0000727 ... P24279 37730685
    2306 8kg8:4 (4.23) BS03 AGS 3.6.4.12 GO:0000727 ... P30665 37730685
    2307 8kg8:5 (4.23) BS04 AGS 3.6.4.12 GO:0000727 ... P29496 37730685
    2308 8kg8:6 (4.23) BS04 AGS 3.6.4.12 GO:0000727 ... P53091 37730685
    2309 8kg8:7 (4.23) BS03 AGS 3.6.4.12 GO:0000727 ... P38132 37730685
    2310 8kg9:2 (4.52) BS04 AGS 3.6.4.12 GO:0000727 ... P29469 37730685
    2311 8kg9:3 (4.52) BS04 AGS 3.6.4.12 GO:0000727 ... P24279 37730685
    2312 8kg9:5 (4.52) BS03 AGS 3.6.4.12 GO:0000727 ... P29496 37730685
    2313 8kg9:7 (4.52) BS04 AGS 3.6.4.12 GO:0000727 ... P38132 37730685
    2314 8p6y:J (1.9) BS01 AGS 2.7.11.22
    2.7.11.23    		 GO:0000307 ... P50613 38480681
    2315 8peu:A (3.7) BS01 AGS N/A GO:0003723 ... P0AG30 N/A
    2316 8peu:B (3.7) BS01 AGS N/A GO:0003723 ... P0AG30 N/A
    2317 8peu:B (3.7) BS02 AGS N/A GO:0003723 ... P0AG30 N/A
    2318 8peu:C (3.7) BS01 AGS N/A GO:0003723 ... P0AG30 N/A
    2319 8peu:D (3.7) BS01 AGS N/A GO:0003723 ... P0AG30 N/A
    2320 8peu:D (3.7) BS02 AGS N/A GO:0003723 ... P0AG30 N/A
    2321 8peu:E (3.7) BS01 AGS N/A GO:0003723 ... P0AG30 N/A
    2322 8peu:E (3.7) BS02 AGS N/A GO:0003723 ... P0AG30 N/A
    2323 8peu:F (3.7) BS01 AGS N/A GO:0003723 ... P0AG30 N/A
    2324 8peu:I (3.7) BS01 AGS N/A GO:0003723 ... P0AG30 N/A
    2325 8peu:J (3.7) BS01 AGS N/A GO:0003723 ... P0AG30 N/A
    2326 8peu:J (3.7) BS02 AGS N/A GO:0003723 ... P0AG30 N/A
    2327 8peu:K (3.7) BS01 AGS N/A GO:0003723 ... P0AG30 N/A
    2328 8peu:K (3.7) BS02 AGS N/A GO:0003723 ... P0AG30 N/A
    2329 8peu:L (3.7) BS01 AGS N/A GO:0003723 ... P0AG30 N/A
    2330 8peu:L (3.7) BS02 AGS N/A GO:0003723 ... P0AG30 N/A
    2331 8peu:M (3.7) BS01 AGS N/A GO:0003723 ... P0AG30 N/A
    2332 8pew:A (4.3) BS01 AGS N/A GO:0003723 ... P0AG30 N/A
    2333 8pew:B (4.3) BS01 AGS N/A GO:0003723 ... P0AG30 N/A
    2334 8pew:B (4.3) BS02 AGS N/A GO:0003723 ... P0AG30 N/A
    2335 8pew:C (4.3) BS01 AGS N/A GO:0003723 ... P0AG30 N/A
    2336 8pew:C (4.3) BS02 AGS N/A GO:0003723 ... P0AG30 N/A
    2337 8pew:D (4.3) BS01 AGS N/A GO:0003723 ... P0AG30 N/A
    2338 8pew:E (4.3) BS01 AGS N/A GO:0003723 ... P0AG30 N/A
    2339 8pew:E (4.3) BS02 AGS N/A GO:0003723 ... P0AG30 N/A
    2340 8pew:F (4.3) BS01 AGS N/A GO:0003723 ... P0AG30 N/A
    2341 8pew:F (4.3) BS02 AGS N/A GO:0003723 ... P0AG30 N/A
    2342 8pew:G (4.3) BS01 AGS N/A GO:0003723 ... P0AG30 N/A
    2343 8pew:H (4.3) BS01 AGS N/A GO:0003723 ... P0AG30 N/A
    2344 8pew:I (4.3) BS01 AGS N/A GO:0003723 ... P0AG30 N/A
    2345 8pew:J (4.3) BS01 AGS N/A GO:0003723 ... P0AG30 N/A
    2346 8pew:J (4.3) BS02 AGS N/A GO:0003723 ... P0AG30 N/A
    2347 8pew:K (4.3) BS01 AGS N/A GO:0003723 ... P0AG30 N/A
    2348 8pew:L (4.3) BS01 AGS N/A GO:0003723 ... P0AG30 N/A
    2349 8pew:L (4.3) BS02 AGS N/A GO:0003723 ... P0AG30 N/A
    2350 8pew:M (4.3) BS01 AGS N/A GO:0003723 ... P0AG30 N/A
    2351 8pew:M (4.3) BS02 AGS N/A GO:0003723 ... P0AG30 N/A
    2352 8pew:N (4.3) BS01 AGS N/A GO:0003723 ... P0AG30 N/A
    2353 8pew:N (4.3) BS02 AGS N/A GO:0003723 ... P0AG30 N/A
    2354 8pew:O (4.3) BS01 AGS N/A GO:0003723 ... P0AG30 N/A
    2355 8pew:P (4.3) BS01 AGS N/A GO:0003723 ... P0AG30 N/A
    2356 8pew:p (4.3) BS01 AGS N/A GO:1990216 ... P05460 N/A
    2357 8pex:A (3.1) BS01 AGS N/A GO:0003723 ... P0AG30 N/A
    2358 8pex:B (3.1) BS01 AGS N/A GO:0003723 ... P0AG30 N/A
    2359 8pex:C (3.1) BS01 AGS N/A GO:0003723 ... P0AG30 N/A
    2360 8pex:C (3.1) BS02 AGS N/A GO:0003723 ... P0AG30 N/A
    2361 8pex:D (3.1) BS01 AGS N/A GO:0003723 ... P0AG30 N/A
    2362 8pex:E (3.1) BS01 AGS N/A GO:0003723 ... P0AG30 N/A
    2363 8pex:E (3.1) BS02 AGS N/A GO:0003723 ... P0AG30 N/A
    2364 8pex:F (3.1) BS01 AGS N/A GO:0003723 ... P0AG30 N/A
    2365 8pex:I (3.1) BS01 AGS N/A GO:0003723 ... P0AG30 N/A
    2366 8pex:J (3.1) BS01 AGS N/A GO:0003723 ... P0AG30 N/A
    2367 8pex:J (3.1) BS02 AGS N/A GO:0003723 ... P0AG30 N/A
    2368 8pex:K (3.1) BS01 AGS N/A GO:0003723 ... P0AG30 N/A
    2369 8pex:K (3.1) BS02 AGS N/A GO:0003723 ... P0AG30 N/A
    2370 8pex:L (3.1) BS01 AGS N/A GO:0003723 ... P0AG30 N/A
    2371 8pex:L (3.1) BS02 AGS N/A GO:0003723 ... P0AG30 N/A
    2372 8pex:M (3.1) BS01 AGS N/A GO:0003723 ... P0AG30 N/A
    2373 8pex:N (3.1) BS01 AGS N/A GO:0003723 ... P0AG30 N/A
    2374 8pey:A (3.0) BS01 AGS N/A GO:0003723 ... P0AG30 N/A
    2375 8pey:B (3.0) BS01 AGS N/A GO:0003723 ... P0AG30 N/A
    2376 8pey:C (3.0) BS01 AGS N/A GO:0003723 ... P0AG30 N/A
    2377 8pey:D (3.0) BS01 AGS N/A GO:0003723 ... P0AG30 N/A
    2378 8pey:E (3.0) BS01 AGS N/A GO:0003723 ... P0AG30 N/A
    2379 8pey:F (3.0) BS01 AGS N/A GO:0003723 ... P0AG30 N/A
    2380 8pey:F (3.0) BS02 AGS N/A GO:0003723 ... P0AG30 N/A
    2381 8pey:G (3.0) BS01 AGS N/A GO:0003723 ... P0AG30 N/A
    2382 8pey:G (3.0) BS02 AGS N/A GO:0003723 ... P0AG30 N/A
    2383 8pey:I (3.0) BS01 AGS N/A GO:0003723 ... P0AG30 N/A
    2384 8pey:J (3.0) BS01 AGS N/A GO:0003723 ... P0AG30 N/A
    2385 8pey:J (3.0) BS02 AGS N/A GO:0003723 ... P0AG30 N/A
    2386 8pey:K (3.0) BS01 AGS N/A GO:0003723 ... P0AG30 N/A
    2387 8pey:K (3.0) BS02 AGS N/A GO:0003723 ... P0AG30 N/A
    2388 8pey:L (3.0) BS01 AGS N/A GO:0003723 ... P0AG30 N/A
    2389 8pey:M (3.0) BS01 AGS N/A GO:0003723 ... P0AG30 N/A
    2390 8pey:M (3.0) BS02 AGS N/A GO:0003723 ... P0AG30 N/A
    2391 8pey:N (3.0) BS01 AGS N/A GO:0003723 ... P0AG30 N/A
    2392 8pfp:A (1.6) BS02 AGS 3.1.-.-
    5.6.2.4    		 GO:0003676 ... Q14191 38658754
    2393 8rob:A (2.5019) BS02 AGS N/A N/A Q14683 39240714
    2394 8rog:A (1.94) BS02 AGS N/A N/A Q14683 39240714
    2395 8rok:A (2.25) BS01 AGS N/A N/A Q9UQE7 39240714
    2396 8rok:A (2.25) BS02 AGS N/A N/A Q9UQE7 39240714
    2397 8rok:C (2.25) BS01 AGS N/A N/A Q9UQE7 39240714
    2398 8rok:C (2.25) BS02 AGS N/A N/A Q9UQE7 39240714
    2399 8rol:A (3.11) BS01 AGS N/A N/A Q9UQE7 39240714
    2400 8seo:A (3.92) BS01 AGS ? GO:0003151 ... P11716 37192614
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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