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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 2564 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    2001 8a5d:V (2.9) BS01 AGS ? GO:0005856 ... G0SE15 36490333
    2002 8a5d:W (2.9) BS01 AGS ? GO:0003682 ... G0SBW4 36490333
    2003 8a5o:U (3.2) BS01 AGS ? GO:0003729 ... Q12386 36490333
    2004 8a5o:V (3.2) BS01 AGS 3.6.4.- GO:0000011 ... P60010 36490333
    2005 8a5o:W (3.2) BS01 AGS ? GO:0000785 ... P80428 36490333
    2006 8amd:A (3.9) BS02 AGS ? GO:0003677 ... P0A452 36806960
    2007 8amd:A (3.9) BS03 AGS ? GO:0003677 ... P0A452 36806960
    2008 8amd:B (3.9) BS02 AGS ? GO:0003677 ... P0A452 36806960
    2009 8amd:B (3.9) BS03 AGS ? GO:0003677 ... P0A452 36806960
    2010 8amd:F (3.9) BS02 AGS ? GO:0003677 ... P0A452 36806960
    2011 8amd:F (3.9) BS03 AGS ? GO:0003677 ... P0A452 36806960
    2012 8amd:G (3.9) BS01 AGS ? GO:0003677 ... P0A452 36806960
    2013 8amf:A (3.8) BS03 AGS ? GO:0003677 ... P0A452 36806960
    2014 8amf:A (3.8) BS04 AGS ? GO:0003677 ... P0A452 36806960
    2015 8amf:B (3.8) BS03 AGS ? GO:0003677 ... P0A452 36806960
    2016 8amf:B (3.8) BS04 AGS ? GO:0003677 ... P0A452 36806960
    2017 8amf:F (3.8) BS03 AGS ? GO:0003677 ... P0A452 36806960
    2018 8amf:F (3.8) BS04 AGS ? GO:0003677 ... P0A452 36806960
    2019 8amf:G (3.8) BS02 AGS ? GO:0003677 ... P0A452 36806960
    2020 8cdq:A (2.21) BS01 AGS ? GO:0000146 ... Q8IDR3 37308472
    2021 8dgs:A (4.3) BS01 AGS 2.7.11.1 GO:0000165 ... P15056 37516774
    2022 8dgs:B (4.3) BS01 AGS 2.7.12.2 GO:0000165 ... Q02750 37516774
    2023 8dgt:A (3.9) BS01 AGS 2.7.11.1 GO:0000165 ... P15056 37516774
    2024 8dgt:B (3.9) BS02 AGS 2.7.12.2 GO:0000165 ... Q02750 37516774
    2025 8dk2:C (4.1) BS02 AGS N/A N/A N/A 36206765
    2026 8dk2:C (4.1) BS04 AGS N/A N/A N/A 36206765
    2027 8dk2:D (4.1) BS02 AGS N/A N/A N/A 36206765
    2028 8dk3:A (3.28) BS01 AGS N/A N/A N/A 36206765
    2029 8dk3:A (3.28) BS02 AGS N/A N/A N/A 36206765
    2030 8dk3:B (3.28) BS01 AGS N/A N/A N/A 36206765
    2031 8dk3:B (3.28) BS02 AGS N/A N/A N/A 36206765
    2032 8dqw:A (2.1) BS03 AGS ? GO:0000077 ... P32641 35939393
    2033 8dqw:B (2.1) BS02 AGS ? GO:0000077 ... P40339 35939393
    2034 8dqw:C (2.1) BS02 AGS ? GO:0000077 ... P38629 35939393
    2035 8dqw:C (2.1) BS03 AGS ? GO:0000077 ... P38629 35939393
    2036 8dqw:D (2.1) BS02 AGS ? GO:0000076 ... P40348 35939393
    2037 8dqw:D (2.1) BS03 AGS ? GO:0000076 ... P40348 35939393
    2038 8dqw:E (2.1) BS02 AGS ? GO:0000077 ... P38251 35939393
    2039 8dqx:A (2.1) BS04 AGS ? GO:0000278 ... P38630 35939393
    2040 8dqx:B (2.1) BS02 AGS ? GO:0000077 ... P40339 35939393
    2041 8dqx:B (2.1) BS03 AGS ? GO:0000077 ... P40339 35939393
    2042 8dqx:C (2.1) BS01 AGS ? GO:0000077 ... P38629 35939393
    2043 8dqx:C (2.1) BS02 AGS ? GO:0000077 ... P38629 35939393
    2044 8dqx:D (2.1) BS01 AGS ? GO:0000076 ... P40348 35939393
    2045 8dqx:D (2.1) BS02 AGS ? GO:0000076 ... P40348 35939393
    2046 8dqx:E (2.1) BS01 AGS ? GO:0000077 ... P38251 35939393
    2047 8dqz:A (2.92) BS03 AGS ? GO:0000278 ... P38630 35939393
    2048 8dqz:B (2.92) BS02 AGS ? GO:0000077 ... P40339 35939393
    2049 8dqz:C (2.92) BS02 AGS ? GO:0000077 ... P38629 35939393
    2050 8dqz:C (2.92) BS04 AGS ? GO:0000077 ... P38629 35939393
    2051 8dqz:D (2.92) BS01 AGS ? GO:0000076 ... P40348 35939393
    2052 8dqz:D (2.92) BS02 AGS ? GO:0000076 ... P40348 35939393
    2053 8dqz:E (2.92) BS01 AGS ? GO:0000077 ... P38251 35939393
    2054 8dr0:A (2.42) BS03 AGS ? GO:0000278 ... P38630 35939393
    2055 8dr0:B (2.42) BS02 AGS ? GO:0000077 ... P40339 35939393
    2056 8dr0:B (2.42) BS03 AGS ? GO:0000077 ... P40339 35939393
    2057 8dr0:C (2.42) BS02 AGS ? GO:0000077 ... P38629 35939393
    2058 8dr0:C (2.42) BS03 AGS ? GO:0000077 ... P38629 35939393
    2059 8dr0:D (2.42) BS01 AGS ? GO:0000076 ... P40348 35939393
    2060 8dr0:D (2.42) BS02 AGS ? GO:0000076 ... P40348 35939393
    2061 8dr0:E (2.42) BS01 AGS ? GO:0000077 ... P38251 35939393
    2062 8dr1:A (2.14) BS05 AGS ? GO:0000278 ... P38630 35939393
    2063 8dr1:B (2.14) BS02 AGS ? GO:0000077 ... P40339 35939393
    2064 8dr1:B (2.14) BS03 AGS ? GO:0000077 ... P40339 35939393
    2065 8dr1:C (2.14) BS02 AGS ? GO:0000077 ... P38629 35939393
    2066 8dr1:C (2.14) BS03 AGS ? GO:0000077 ... P38629 35939393
    2067 8dr1:D (2.14) BS02 AGS ? GO:0000076 ... P40348 35939393
    2068 8dr1:D (2.14) BS03 AGS ? GO:0000076 ... P40348 35939393
    2069 8dr1:E (2.14) BS02 AGS ? GO:0000077 ... P38251 35939393
    2070 8dr3:A (2.2) BS05 AGS ? GO:0000278 ... P38630 35939393
    2071 8dr3:B (2.2) BS03 AGS ? GO:0000077 ... P40339 35939393
    2072 8dr3:B (2.2) BS04 AGS ? GO:0000077 ... P40339 35939393
    2073 8dr3:C (2.2) BS02 AGS ? GO:0000077 ... P38629 35939393
    2074 8dr3:D (2.2) BS02 AGS ? GO:0000076 ... P40348 35939393
    2075 8dr3:D (2.2) BS03 AGS ? GO:0000076 ... P40348 35939393
    2076 8dr3:E (2.2) BS01 AGS ? GO:0000077 ... P38251 35939393
    2077 8dr4:A (2.45) BS05 AGS ? GO:0000278 ... P38630 35939393
    2078 8dr4:B (2.45) BS02 AGS ? GO:0000077 ... P40339 35939393
    2079 8dr4:B (2.45) BS03 AGS ? GO:0000077 ... P40339 35939393
    2080 8dr4:C (2.45) BS02 AGS ? GO:0000077 ... P38629 35939393
    2081 8dr4:C (2.45) BS03 AGS ? GO:0000077 ... P38629 35939393
    2082 8dr4:D (2.45) BS01 AGS ? GO:0000076 ... P40348 35939393
    2083 8dr4:D (2.45) BS02 AGS ? GO:0000076 ... P40348 35939393
    2084 8dr4:E (2.45) BS02 AGS ? GO:0000077 ... P38251 35939393
    2085 8dr5:A (2.76) BS06 AGS ? GO:0000278 ... P38630 35939393
    2086 8dr5:B (2.76) BS02 AGS ? GO:0000077 ... P40339 35939393
    2087 8dr5:B (2.76) BS03 AGS ? GO:0000077 ... P40339 35939393
    2088 8dr5:C (2.76) BS02 AGS ? GO:0000077 ... P38629 35939393
    2089 8dr5:D (2.76) BS01 AGS ? GO:0000076 ... P40348 35939393
    2090 8dr5:D (2.76) BS02 AGS ? GO:0000076 ... P40348 35939393
    2091 8dr5:E (2.76) BS02 AGS ? GO:0000077 ... P38251 35939393
    2092 8dr6:A (2.39) BS04 AGS ? GO:0000278 ... P38630 35939393
    2093 8dr6:B (2.39) BS02 AGS ? GO:0000077 ... P40339 35939393
    2094 8dr6:C (2.39) BS02 AGS ? GO:0000077 ... P38629 35939393
    2095 8dr6:C (2.39) BS03 AGS ? GO:0000077 ... P38629 35939393
    2096 8dr6:D (2.39) BS01 AGS ? GO:0000076 ... P40348 35939393
    2097 8dr6:D (2.39) BS02 AGS ? GO:0000076 ... P40348 35939393
    2098 8dr6:E (2.39) BS01 AGS ? GO:0000077 ... P38251 35939393
    2099 8dr7:A (2.7) BS04 AGS ? GO:0000278 ... P38630 35939393
    2100 8dr7:B (2.7) BS02 AGS ? GO:0000077 ... P40339 35939393
    2101 8dr7:B (2.7) BS03 AGS ? GO:0000077 ... P40339 35939393
    2102 8dr7:C (2.7) BS02 AGS ? GO:0000077 ... P38629 35939393
    2103 8dr7:C (2.7) BS03 AGS ? GO:0000077 ... P38629 35939393
    2104 8dr7:D (2.7) BS01 AGS ? GO:0000076 ... P40348 35939393
    2105 8dr7:E (2.7) BS01 AGS ? GO:0000077 ... P38251 35939393
    2106 8dtp:A (2.7) BS01 AGS 3.6.4.- GO:0003677 ... P04530 37474605
    2107 8dtp:B (2.7) BS02 AGS 3.6.4.- GO:0003677 ... P04530 37474605
    2108 8dtp:B (2.7) BS04 AGS 3.6.4.- GO:0003677 ... P04530 37474605
    2109 8dtp:C (2.7) BS02 AGS 3.6.4.- GO:0003677 ... P04530 37474605
    2110 8dtp:C (2.7) BS04 AGS 3.6.4.- GO:0003677 ... P04530 37474605
    2111 8dtp:D (2.7) BS02 AGS 3.6.4.- GO:0003677 ... P04530 37474605
    2112 8dtp:D (2.7) BS03 AGS 3.6.4.- GO:0003677 ... P04530 37474605
    2113 8dtp:E (2.7) BS02 AGS 3.6.4.- GO:0003677 ... P04530 37474605
    2114 8dtp:E (2.7) BS03 AGS 3.6.4.- GO:0003677 ... P04530 37474605
    2115 8dtp:F (2.7) BS02 AGS 3.6.4.- GO:0003677 ... P04530 37474605
    2116 8due:A (2.9) BS01 AGS 3.6.4.- GO:0003677 ... P04530 37474605
    2117 8due:B (2.9) BS02 AGS 3.6.4.- GO:0003677 ... P04530 37474605
    2118 8due:B (2.9) BS04 AGS 3.6.4.- GO:0003677 ... P04530 37474605
    2119 8due:C (2.9) BS02 AGS 3.6.4.- GO:0003677 ... P04530 37474605
    2120 8due:C (2.9) BS03 AGS 3.6.4.- GO:0003677 ... P04530 37474605
    2121 8due:D (2.9) BS02 AGS 3.6.4.- GO:0003677 ... P04530 37474605
    2122 8due:D (2.9) BS03 AGS 3.6.4.- GO:0003677 ... P04530 37474605
    2123 8due:E (2.9) BS02 AGS 3.6.4.- GO:0003677 ... P04530 37474605
    2124 8due:E (2.9) BS03 AGS 3.6.4.- GO:0003677 ... P04530 37474605
    2125 8due:F (2.9) BS02 AGS 3.6.4.- GO:0003677 ... P04530 37474605
    2126 8duo:A (5.7) BS01 AGS 3.6.4.- GO:0003677 ... P04530 37474605
    2127 8duo:B (5.7) BS01 AGS 3.6.4.- GO:0003677 ... P04530 37474605
    2128 8duo:C (5.7) BS01 AGS 3.6.4.- GO:0003677 ... P04530 37474605
    2129 8duo:C (5.7) BS02 AGS 3.6.4.- GO:0003677 ... P04530 37474605
    2130 8duo:D (5.7) BS01 AGS 3.6.4.- GO:0003677 ... P04530 37474605
    2131 8duo:E (5.7) BS01 AGS 3.6.4.- GO:0003677 ... P04530 37474605
    2132 8duo:E (5.7) BS03 AGS 3.6.4.- GO:0003677 ... P04530 37474605
    2133 8duo:F (5.7) BS01 AGS 3.6.4.- GO:0003677 ... P04530 37474605
    2134 8dvf:A (3.3) BS01 AGS 3.6.4.- GO:0003677 ... P04530 37474605
    2135 8dvf:B (3.3) BS02 AGS 3.6.4.- GO:0003677 ... P04530 37474605
    2136 8dvf:B (3.3) BS04 AGS 3.6.4.- GO:0003677 ... P04530 37474605
    2137 8dvf:C (3.3) BS02 AGS 3.6.4.- GO:0003677 ... P04530 37474605
    2138 8dvf:C (3.3) BS04 AGS 3.6.4.- GO:0003677 ... P04530 37474605
    2139 8dvf:D (3.3) BS02 AGS 3.6.4.- GO:0003677 ... P04530 37474605
    2140 8dvf:D (3.3) BS03 AGS 3.6.4.- GO:0003677 ... P04530 37474605
    2141 8dvf:E (3.3) BS02 AGS 3.6.4.- GO:0003677 ... P04530 37474605
    2142 8dvf:E (3.3) BS03 AGS 3.6.4.- GO:0003677 ... P04530 37474605
    2143 8dvf:F (3.3) BS02 AGS 3.6.4.- GO:0003677 ... P04530 37474605
    2144 8dvi:A (3.2) BS01 AGS 3.6.4.- GO:0003677 ... P04530 37474605
    2145 8dvi:B (3.2) BS02 AGS 3.6.4.- GO:0003677 ... P04530 37474605
    2146 8dvi:B (3.2) BS04 AGS 3.6.4.- GO:0003677 ... P04530 37474605
    2147 8dvi:C (3.2) BS02 AGS 3.6.4.- GO:0003677 ... P04530 37474605
    2148 8dvi:C (3.2) BS04 AGS 3.6.4.- GO:0003677 ... P04530 37474605
    2149 8dvi:D (3.2) BS02 AGS 3.6.4.- GO:0003677 ... P04530 37474605
    2150 8dvi:D (3.2) BS03 AGS 3.6.4.- GO:0003677 ... P04530 37474605
    2151 8dvi:E (3.2) BS02 AGS 3.6.4.- GO:0003677 ... P04530 37474605
    2152 8dvi:E (3.2) BS03 AGS 3.6.4.- GO:0003677 ... P04530 37474605
    2153 8dvi:F (3.2) BS02 AGS 3.6.4.- GO:0003677 ... P04530 37474605
    2154 8dw6:A (3.5) BS01 AGS 3.6.4.- GO:0003677 ... P04530 37474605
    2155 8dw6:B (3.5) BS02 AGS 3.6.4.- GO:0003677 ... P04530 37474605
    2156 8dw6:B (3.5) BS04 AGS 3.6.4.- GO:0003677 ... P04530 37474605
    2157 8dw6:C (3.5) BS02 AGS 3.6.4.- GO:0003677 ... P04530 37474605
    2158 8dw6:C (3.5) BS04 AGS 3.6.4.- GO:0003677 ... P04530 37474605
    2159 8dw6:D (3.5) BS02 AGS 3.6.4.- GO:0003677 ... P04530 37474605
    2160 8dw6:D (3.5) BS03 AGS 3.6.4.- GO:0003677 ... P04530 37474605
    2161 8dw6:E (3.5) BS02 AGS 3.6.4.- GO:0003677 ... P04530 37474605
    2162 8dw6:E (3.5) BS03 AGS 3.6.4.- GO:0003677 ... P04530 37474605
    2163 8dw6:F (3.5) BS02 AGS 3.6.4.- GO:0003677 ... P04530 37474605
    2164 8e91:A (2.57) BS01 AGS ? GO:0002020 ... P0A6H1 N/A
    2165 8e91:B (2.57) BS01 AGS ? GO:0002020 ... P0A6H1 N/A
    2166 8e91:C (2.57) BS01 AGS ? GO:0002020 ... P0A6H1 N/A
    2167 8e91:D (2.57) BS01 AGS ? GO:0002020 ... P0A6H1 N/A
    2168 8e91:D (2.57) BS02 AGS ? GO:0002020 ... P0A6H1 N/A
    2169 8e91:E (2.57) BS01 AGS ? GO:0002020 ... P0A6H1 N/A
    2170 8edw:A (3.6) BS01 AGS 7.6.2.1 GO:0000139 ... Q8IZY2 36484366
    2171 8edw:A (3.6) BS02 AGS 7.6.2.1 GO:0000139 ... Q8IZY2 36484366
    2172 8ee6:A (4.0) BS01 AGS 7.6.2.1 GO:0000139 ... Q8IZY2 36484366
    2173 8ee6:A (4.0) BS02 AGS 7.6.2.1 GO:0000139 ... Q8IZY2 36484366
    2174 8efv:A (2.97) BS03 AGS 3.6.4.12 GO:0000400 ... Q5SL87 N/A
    2175 8efv:B (2.97) BS03 AGS 3.6.4.12 GO:0000400 ... Q5SL87 N/A
    2176 8efv:B (2.97) BS04 AGS 3.6.4.12 GO:0000400 ... Q5SL87 N/A
    2177 8efv:C (2.97) BS03 AGS 3.6.4.12 GO:0000400 ... Q5SL87 N/A
    2178 8efv:D (2.97) BS02 AGS 3.6.4.12 GO:0000400 ... Q5SL87 N/A
    2179 8efy:A (3.16) BS04 AGS 3.6.4.12 GO:0000400 ... Q5SL87 N/A
    2180 8efy:B (3.16) BS03 AGS 3.6.4.12 GO:0000400 ... Q5SL87 N/A
    2181 8efy:C (3.16) BS03 AGS 3.6.4.12 GO:0000400 ... Q5SL87 N/A
    2182 8efy:D (3.16) BS02 AGS 3.6.4.12 GO:0000400 ... Q5SL87 N/A
    2183 8efy:I (3.16) BS03 AGS 3.6.4.12 GO:0000400 ... Q5SL87 N/A
    2184 8efy:J (3.16) BS03 AGS 3.6.4.12 GO:0000400 ... Q5SL87 N/A
    2185 8efy:K (3.16) BS03 AGS 3.6.4.12 GO:0000400 ... Q5SL87 N/A
    2186 8efy:L (3.16) BS02 AGS 3.6.4.12 GO:0000400 ... Q5SL87 N/A
    2187 8ej4:A (3.4) BS01 AGS 3.6.4.- N/A Q96P20 36442502
    2188 8ej4:B (3.4) BS01 AGS 3.6.4.- N/A Q96P20 36442502
    2189 8ej4:C (3.4) BS01 AGS 3.6.4.- N/A Q96P20 36442502
    2190 8ej4:D (3.4) BS01 AGS 3.6.4.- N/A Q96P20 36442502
    2191 8ej4:E (3.4) BS01 AGS 3.6.4.- N/A Q96P20 36442502
    2192 8ej4:F (3.4) BS01 AGS 3.6.4.- N/A Q96P20 36442502
    2193 8ej4:G (3.4) BS01 AGS 3.6.4.- N/A Q96P20 36442502
    2194 8ej4:H (3.4) BS01 AGS 3.6.4.- N/A Q96P20 36442502
    2195 8ej4:I (3.4) BS01 AGS 3.6.4.- N/A Q96P20 36442502
    2196 8ej4:J (3.4) BS01 AGS 3.6.4.- N/A Q96P20 36442502
    2197 8et3:A (3.7) BS02 AGS ? GO:0002020 ... P0A6H1 36730206
    2198 8et3:B (3.7) BS02 AGS ? GO:0002020 ... P0A6H1 36730206
    2199 8et3:B (3.7) BS03 AGS ? GO:0002020 ... P0A6H1 36730206
    2200 8et3:C (3.7) BS01 AGS ? GO:0002020 ... P0A6H1 36730206
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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