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BioLiP
Download all results in tab-seperated text for 69 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1aoo:A (-1.00) BS01 AG N/A GO:0005507 ... N/A 8566237
    2 1aoo:A (-1.00) BS02 AG N/A GO:0005507 ... N/A 8566237
    3 1aoo:A (-1.00) BS03 AG N/A GO:0005507 ... N/A 8566237
    4 1aoo:A (-1.00) BS04 AG N/A GO:0005507 ... N/A 8566237
    5 1aoo:A (-1.00) BS05 AG N/A GO:0005507 ... N/A 8566237
    6 1aoo:A (-1.00) BS06 AG N/A GO:0005507 ... N/A 8566237
    7 1aoo:A (-1.00) BS07 AG N/A GO:0005507 ... N/A 8566237
    8 1aqq:A (-1.00) BS01 AG N/A GO:0005507 ... N/A 8566237
    9 1aqq:A (-1.00) BS02 AG N/A GO:0005507 ... N/A 8566237
    10 1aqq:A (-1.00) BS03 AG N/A GO:0005507 ... N/A 8566237
    11 1aqq:A (-1.00) BS04 AG N/A GO:0005507 ... N/A 8566237
    12 1aqq:A (-1.00) BS05 AG N/A GO:0005507 ... N/A 8566237
    13 1aqq:A (-1.00) BS06 AG N/A GO:0005507 ... N/A 8566237
    14 1aqq:A (-1.00) BS07 AG N/A GO:0005507 ... N/A 8566237
    15 2qcp:X (1.0) BS01 AG ? N/A P77214 17893365
    16 2x50:A (3.3) BS03 AG 1.8.1.12 GO:0000166 ... A4HSF7 24900299
    17 2x50:B (3.3) BS02 AG 1.8.1.12 GO:0000166 ... A4HSF7 24900299
    18 2x50:B (3.3) BS03 AG 1.8.1.12 GO:0000166 ... A4HSF7 24900299
    19 3h94:A (3.84) BS01 AG ? GO:0016020 ... P77239 19695261
    20 3h94:B (3.84) BS01 AG ? GO:0016020 ... P77239 19695261
    21 3nsd:A (2.0) BS05 AG 1.16.3.4 GO:0004322 ... P36649 21903583
    22 3nsd:A (2.0) BS06 AG 1.16.3.4 GO:0004322 ... P36649 21903583
    23 3nsd:A (2.0) BS07 AG 1.16.3.4 GO:0004322 ... P36649 21903583
    24 3opo:A (3.848) BS01 AG ? GO:0016020 ... P77239 19695261
    25 3opo:B (3.848) BS01 AG ? GO:0016020 ... P77239 19695261
    26 3ru5:A (1.35) BS01 AG 3.2.1.17 GO:0003796 ... P00698 22042312
    27 5a4g:A (-1.00) BS01 AG ? GO:0046872 ... Q58AF3 27145046
    28 5ffd:A (1.451) BS01 AG ? N/A Q6YRW5 27599732
    29 5ffe:A (2.096) BS01 AG ? N/A Q6YRW5 27599732
    30 5ffe:A (2.096) BS02 AG ? N/A Q6YRW5 27599732
    31 5ffe:A (2.096) BS03 AG ? N/A Q6YRW5 27599732
    32 5ffe:A (2.096) BS04 AG ? N/A Q6YRW5 27599732
    33 5ffe:B (2.096) BS01 AG ? N/A Q6YRW5 27599732
    34 5ffe:B (2.096) BS02 AG ? N/A Q6YRW5 27599732
    35 5ffe:B (2.096) BS03 AG ? N/A Q6YRW5 27599732
    36 6g48:C (1.91) BS03 AG 3.5.1.5 GO:0005737 ... P41020 29845996
    37 6io6:A (2.64) BS01 AG 1.2.1.12 GO:0000166 ... P0A9B2 31588287
    38 6z8q:A (2.71) BS01 AG ? GO:0005515 ... G3XD89 34762655
    39 6z8q:A (2.71) BS02 AG ? GO:0005515 ... G3XD89 34762655
    40 6z8q:A (2.71) BS03 AG ? GO:0005515 ... G3XD89 34762655
    41 6z8q:B (2.71) BS01 AG ? GO:0005515 ... G3XD89 34762655
    42 6z8q:B (2.71) BS02 AG ? GO:0005515 ... G3XD89 34762655
    43 6z8q:B (2.71) BS03 AG ? GO:0005515 ... G3XD89 34762655
    44 6z8t:A (2.86) BS01 AG ? GO:0005515 ... G3XD89 34762655
    45 6z8t:A (2.86) BS02 AG ? GO:0005515 ... G3XD89 34762655
    46 6z8t:B (2.86) BS01 AG ? GO:0005515 ... G3XD89 34762655
    47 6z8t:B (2.86) BS02 AG ? GO:0005515 ... G3XD89 34762655
    48 6z8t:B (2.86) BS03 AG ? GO:0005515 ... G3XD89 34762655
    49 6z8u:A (2.61) BS01 AG ? GO:0005515 ... G3XD89 34762655
    50 6z8u:A (2.61) BS02 AG ? GO:0005515 ... G3XD89 34762655
    51 6z8u:A (2.61) BS03 AG ? GO:0005515 ... G3XD89 34762655
    52 6z8u:B (2.61) BS01 AG ? GO:0005515 ... G3XD89 34762655
    53 6z8u:B (2.61) BS02 AG ? GO:0005515 ... G3XD89 34762655
    54 6z8u:B (2.61) BS03 AG ? GO:0005515 ... G3XD89 34762655
    55 6z91:A (2.6) BS01 AG ? GO:0005515 ... G3XD89 34762655
    56 6z91:A (2.6) BS02 AG ? GO:0005515 ... G3XD89 34762655
    57 6z91:A (2.6) BS03 AG ? GO:0005515 ... G3XD89 34762655
    58 6z91:B (2.6) BS01 AG ? GO:0005515 ... G3XD89 34762655
    59 6z91:B (2.6) BS02 AG ? GO:0005515 ... G3XD89 34762655
    60 6z91:B (2.6) BS03 AG ? GO:0005515 ... G3XD89 34762655
    61 6z99:A (2.68) BS01 AG ? GO:0005515 ... G3XD89 34762655
    62 6z99:A (2.68) BS02 AG ? GO:0005515 ... G3XD89 34762655
    63 6z99:A (2.68) BS03 AG ? GO:0005515 ... G3XD89 34762655
    64 6z99:B (2.68) BS01 AG ? GO:0005515 ... G3XD89 34762655
    65 6z99:B (2.68) BS02 AG ? GO:0005515 ... G3XD89 34762655
    66 6z99:B (2.68) BS03 AG ? GO:0005515 ... G3XD89 34762655
    67 8c2q:A (-1.00) BS01 AG ? N/A Q9ZHD1 37394004
    68 8gy1:A (1.9) BS01 AG 1.16.3.1 GO:0005737 ... A0A8F4Y4C2 36904538
    69 8gy1:A (1.9) BS02 AG 1.16.3.1 GO:0005737 ... A0A8F4Y4C2 36904538
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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