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BioLiP
Download all results in tab-seperated text for 662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    601 8sho:b (3.0) BS02 AF3 ? GO:0002199 ... P78371 37852256
    602 8sho:d (3.0) BS02 AF3 ? GO:0002199 ... P50991 37852256
    603 8sho:e (3.0) BS02 AF3 ? GO:0003730 ... P48643 37852256
    604 8sho:g (3.0) BS02 AF3 ? GO:0002199 ... P49368 37852256
    605 8sho:h (3.0) BS02 AF3 ? GO:0005515 ... Q99832 37852256
    606 8sho:q (3.0) BS02 AF3 ? GO:0002199 ... P50990 37852256
    607 8sho:z (3.0) BS02 AF3 ? GO:0003723 ... P40227 37852256
    608 8shp:A (3.0) BS02 AF3 ? GO:0000242 ... P17987 37852256
    609 8shp:B (3.0) BS02 AF3 ? GO:0002199 ... P78371 37852256
    610 8shp:D (3.0) BS02 AF3 ? GO:0002199 ... P50991 37852256
    611 8shp:E (3.0) BS02 AF3 ? GO:0003730 ... P48643 37852256
    612 8shp:G (3.0) BS02 AF3 ? GO:0002199 ... P49368 37852256
    613 8shp:H (3.0) BS02 AF3 ? GO:0005515 ... Q99832 37852256
    614 8shp:Q (3.0) BS02 AF3 ? GO:0002199 ... P50990 37852256
    615 8shp:Z (3.0) BS02 AF3 ? GO:0003723 ... P40227 37852256
    616 8shp:a (3.0) BS02 AF3 ? GO:0000242 ... P17987 37852256
    617 8shp:b (3.0) BS02 AF3 ? GO:0002199 ... P78371 37852256
    618 8shp:d (3.0) BS02 AF3 ? GO:0002199 ... P50991 37852256
    619 8shp:e (3.0) BS02 AF3 ? GO:0003730 ... P48643 37852256
    620 8shp:g (3.0) BS02 AF3 ? GO:0002199 ... P49368 37852256
    621 8shp:h (3.0) BS02 AF3 ? GO:0005515 ... Q99832 37852256
    622 8shp:q (3.0) BS02 AF3 ? GO:0002199 ... P50990 37852256
    623 8shp:z (3.0) BS02 AF3 ? GO:0003723 ... P40227 37852256
    624 8shq:A (2.9) BS02 AF3 ? GO:0000242 ... P17987 37852256
    625 8shq:B (2.9) BS02 AF3 ? GO:0002199 ... P78371 37852256
    626 8shq:D (2.9) BS02 AF3 ? GO:0002199 ... P50991 37852256
    627 8shq:E (2.9) BS02 AF3 ? GO:0003730 ... P48643 37852256
    628 8shq:G (2.9) BS02 AF3 ? GO:0002199 ... P49368 37852256
    629 8shq:H (2.9) BS02 AF3 ? GO:0005515 ... Q99832 37852256
    630 8shq:Q (2.9) BS02 AF3 ? GO:0002199 ... P50990 37852256
    631 8shq:Z (2.9) BS02 AF3 ? GO:0003723 ... P40227 37852256
    632 8shq:a (2.9) BS02 AF3 ? GO:0000242 ... P17987 37852256
    633 8shq:b (2.9) BS02 AF3 ? GO:0002199 ... P78371 37852256
    634 8shq:d (2.9) BS02 AF3 ? GO:0002199 ... P50991 37852256
    635 8shq:e (2.9) BS02 AF3 ? GO:0003730 ... P48643 37852256
    636 8shq:g (2.9) BS02 AF3 ? GO:0002199 ... P49368 37852256
    637 8shq:h (2.9) BS02 AF3 ? GO:0005515 ... Q99832 37852256
    638 8shq:q (2.9) BS02 AF3 ? GO:0002199 ... P50990 37852256
    639 8shq:z (2.9) BS02 AF3 ? GO:0003723 ... P40227 37852256
    640 8sht:A (3.0) BS02 AF3 ? GO:0000242 ... P17987 37852256
    641 8sht:B (3.0) BS02 AF3 ? GO:0002199 ... P78371 37852256
    642 8sht:D (3.0) BS02 AF3 ? GO:0002199 ... P50991 37852256
    643 8sht:E (3.0) BS02 AF3 ? GO:0003730 ... P48643 37852256
    644 8sht:G (3.0) BS02 AF3 ? GO:0002199 ... P49368 37852256
    645 8sht:H (3.0) BS02 AF3 ? GO:0005515 ... Q99832 37852256
    646 8sht:Q (3.0) BS02 AF3 ? GO:0002199 ... P50990 37852256
    647 8sht:Z (3.0) BS02 AF3 ? GO:0003723 ... P40227 37852256
    648 8sht:a (3.0) BS02 AF3 ? GO:0000242 ... P17987 37852256
    649 8sht:b (3.0) BS02 AF3 ? GO:0002199 ... P78371 37852256
    650 8sht:d (3.0) BS02 AF3 ? GO:0002199 ... P50991 37852256
    651 8sht:e (3.0) BS02 AF3 ? GO:0003730 ... P48643 37852256
    652 8sht:g (3.0) BS02 AF3 ? GO:0002199 ... P49368 37852256
    653 8sht:h (3.0) BS02 AF3 ? GO:0005515 ... Q99832 37852256
    654 8sht:q (3.0) BS02 AF3 ? GO:0002199 ... P50990 37852256
    655 8sht:z (3.0) BS02 AF3 ? GO:0003723 ... P40227 37852256
    656 8uk9:B (3.1) BS02 AF3 3.6.4.- GO:0003677 ... P04526 38177685
    657 8uk9:C (3.1) BS03 AF3 3.6.4.- GO:0003677 ... P04526 38177685
    658 8uk9:D (3.1) BS03 AF3 3.6.4.- GO:0003677 ... P04526 38177685
    659 8uk9:K (3.1) BS03 AF3 3.6.4.- GO:0003677 ... P04526 38177685
    660 8uk9:L (3.1) BS03 AF3 3.6.4.- GO:0003677 ... P04526 38177685
    661 8uk9:M (3.1) BS03 AF3 3.6.4.- GO:0003677 ... P04526 38177685
    662 8vmf:A (2.5) BS04 AF3 N/A N/A Q9WV60 39226374
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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