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BioLiP
Download all results in tab-seperated text for 91 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1g8g:A (2.6) BS02 ADX 2.7.7.4 GO:0000096 ... P08536 11157739
    2 1g8g:B (2.6) BS02 ADX 2.7.7.4 GO:0000096 ... P08536 11157739
    3 1g8h:A (2.8) BS02 ADX 2.7.7.4 GO:0000096 ... P08536 11157739
    4 1g8h:B (2.8) BS02 ADX 2.7.7.4 GO:0000096 ... P08536 11157739
    5 1i2d:A (2.81) BS01 ADX 2.7.7.4 GO:0000103 ... Q12650 11389593
    6 1i2d:A (2.81) BS02 ADX 2.7.7.4 GO:0000103 ... Q12650 11389593
    7 1i2d:B (2.81) BS01 ADX 2.7.7.4 GO:0000103 ... Q12650 11389593
    8 1i2d:B (2.81) BS02 ADX 2.7.7.4 GO:0000103 ... Q12650 11389593
    9 1i2d:C (2.81) BS01 ADX 2.7.7.4 GO:0000103 ... Q12650 11389593
    10 1i2d:C (2.81) BS02 ADX 2.7.7.4 GO:0000103 ... Q12650 11389593
    11 1jee:A (2.8) BS04 ADX 2.7.7.4 GO:0000096 ... P08536 11700067
    12 1jee:B (2.8) BS03 ADX 2.7.7.4 GO:0000096 ... P08536 11700067
    13 1m7g:A (1.43) BS05 ADX 2.7.1.25 GO:0000103 ... Q12657 12427029
    14 1m7g:B (1.43) BS03 ADX 2.7.1.25 GO:0000103 ... Q12657 12427029
    15 1m7g:C (1.43) BS04 ADX 2.7.1.25 GO:0000103 ... Q12657 12427029
    16 1m7g:D (1.43) BS02 ADX 2.7.1.25 GO:0000103 ... Q12657 12427029
    17 1m7h:B (2.0) BS02 ADX 2.7.1.25 GO:0000103 ... Q12657 12427029
    18 1m7h:D (2.0) BS02 ADX 2.7.1.25 GO:0000103 ... Q12657 12427029
    19 1v47:A (2.49) BS02 ADX 2.7.7.4 GO:0000103 ... Q5SKH7 15065853
    20 1v47:B (2.49) BS02 ADX 2.7.7.4 GO:0000103 ... Q5SKH7 15065853
    21 1xnj:A (1.98) BS01 ADX 2.7.1.25
    2.7.7.4    		 GO:0000103 ... O43252 15755455
    22 1xnj:B (1.98) BS02 ADX 2.7.1.25
    2.7.7.4    		 GO:0000103 ... O43252 15755455
    23 1xnj:B (1.98) BS03 ADX 2.7.1.25
    2.7.7.4    		 GO:0000103 ... O43252 15755455
    24 2fja:A (2.0) BS02 ADX 1.8.99.2 GO:0000104 ... O28603 16503650
    25 2fja:C (2.0) BS02 ADX 1.8.99.2 GO:0000104 ... O28603 16503650
    26 2goy:B (2.7) BS02 ADX 1.8.4.10 GO:0000103 ... O05927 17010373
    27 2goy:D (2.7) BS02 ADX 1.8.4.10 GO:0000103 ... O05927 17010373
    28 2goy:F (2.7) BS02 ADX 1.8.4.10 GO:0000103 ... O05927 17010373
    29 2goy:H (2.7) BS02 ADX 1.8.4.10 GO:0000103 ... O05927 17010373
    30 2ofw:A (2.05) BS01 ADX 2.7.1.25
    2.7.7.4    		 GO:0000103 ... O43252 17276460 MOAD: Ki=17uM
    31 2ofw:A (2.05) BS02 ADX 2.7.1.25
    2.7.7.4    		 GO:0000103 ... O43252 17276460 MOAD: Ki=17uM
    32 2ofw:B (2.05) BS01 ADX 2.7.1.25
    2.7.7.4    		 GO:0000103 ... O43252 17276460 MOAD: Ki=17uM
    33 2ofw:B (2.05) BS02 ADX 2.7.1.25
    2.7.7.4    		 GO:0000103 ... O43252 17276460 MOAD: Ki=17uM
    34 2ofw:C (2.05) BS01 ADX 2.7.1.25
    2.7.7.4    		 GO:0000103 ... O43252 17276460 MOAD: Ki=17uM
    35 2ofw:C (2.05) BS02 ADX 2.7.1.25
    2.7.7.4    		 GO:0000103 ... O43252 17276460 MOAD: Ki=17uM
    36 2ofw:D (2.05) BS01 ADX 2.7.1.25
    2.7.7.4    		 GO:0000103 ... O43252 17276460 MOAD: Ki=17uM
    37 2ofw:D (2.05) BS02 ADX 2.7.1.25
    2.7.7.4    		 GO:0000103 ... O43252 17276460 MOAD: Ki=17uM
    38 2ofw:E (2.05) BS01 ADX 2.7.1.25
    2.7.7.4    		 GO:0000103 ... O43252 17276460 MOAD: Ki=17uM
    39 2ofw:E (2.05) BS02 ADX 2.7.1.25
    2.7.7.4    		 GO:0000103 ... O43252 17276460 MOAD: Ki=17uM
    40 2ofw:F (2.05) BS01 ADX 2.7.1.25
    2.7.7.4    		 GO:0000103 ... O43252 17276460 MOAD: Ki=17uM
    41 2ofw:F (2.05) BS02 ADX 2.7.1.25
    2.7.7.4    		 GO:0000103 ... O43252 17276460 MOAD: Ki=17uM
    42 2ofw:G (2.05) BS01 ADX 2.7.1.25
    2.7.7.4    		 GO:0000103 ... O43252 17276460 MOAD: Ki=17uM
    43 2ofw:G (2.05) BS02 ADX 2.7.1.25
    2.7.7.4    		 GO:0000103 ... O43252 17276460 MOAD: Ki=17uM
    44 2ofw:H (2.05) BS01 ADX 2.7.1.25
    2.7.7.4    		 GO:0000103 ... O43252 17276460 MOAD: Ki=17uM
    45 2ofw:H (2.05) BS02 ADX 2.7.1.25
    2.7.7.4    		 GO:0000103 ... O43252 17276460 MOAD: Ki=17uM
    46 2pey:A (1.88) BS01 ADX 2.7.1.25
    2.7.7.4    		 GO:0000103 ... O43252 17540769
    47 2qjf:A (2.2) BS01 ADX 2.7.1.25
    2.7.7.4    		 GO:0000103 ... O43252 N/A
    48 2qjf:B (2.2) BS01 ADX 2.7.1.25
    2.7.7.4    		 GO:0000103 ... O43252 N/A
    49 3uie:A (1.794) BS01 ADX 2.7.1.25 GO:0000103 ... Q43295 22184237
    50 3uie:B (1.794) BS01 ADX 2.7.1.25 GO:0000103 ... Q43295 22184237
    51 3uie:C (1.794) BS01 ADX 2.7.1.25 GO:0000103 ... Q43295 22184237
    52 4bzq:A (2.1) BS01 ADX 2.7.1.25
    2.7.7.4    		 GO:0000103 ... P9WNM5 25807013
    53 4bzq:B (2.1) BS01 ADX 2.7.1.25
    2.7.7.4    		 GO:0000103 ... P9WNM5 25807013
    54 4bzx:A (1.7) BS01 ADX 2.7.1.25
    2.7.7.4    		 GO:0000103 ... P9WNM5 25807013
    55 4bzx:B (1.7) BS01 ADX 2.7.1.25
    2.7.7.4    		 GO:0000103 ... P9WNM5 25807013
    56 4fxp:A (1.954) BS01 ADX 2.7.1.25 GO:0000103 ... Q43295 22810229 PDBbind: -logKd/Ki=4.09, Kd=80.4uM
    57 4fxp:B (1.954) BS01 ADX 2.7.1.25 GO:0000103 ... Q43295 22810229
    58 4fxp:C (1.954) BS01 ADX 2.7.1.25 GO:0000103 ... Q43295 22810229
    59 4maf:A (2.48) BS01 ADX 2.7.7.4 GO:0000103 ... Q8SAG1 24584934
    60 4maf:B (2.48) BS01 ADX 2.7.7.4 GO:0000103 ... Q8SAG1 24584934
    61 4maf:C (2.48) BS01 ADX 2.7.7.4 GO:0000103 ... Q8SAG1 24584934
    62 4maf:D (2.48) BS01 ADX 2.7.7.4 GO:0000103 ... Q8SAG1 24584934
    63 4maf:E (2.48) BS01 ADX 2.7.7.4 GO:0000103 ... Q8SAG1 24584934
    64 4maf:F (2.48) BS01 ADX 2.7.7.4 GO:0000103 ... Q8SAG1 24584934
    65 4maf:G (2.48) BS01 ADX 2.7.7.4 GO:0000103 ... Q8SAG1 24584934
    66 4maf:H (2.48) BS01 ADX 2.7.7.4 GO:0000103 ... Q8SAG1 24584934
    67 5cb6:A (2.79) BS01 ADX 2.7.1.25 GO:0000103 ... P72940 26294763
    68 5cb6:B (2.79) BS01 ADX 2.7.1.25 GO:0000103 ... P72940 26294763
    69 5cb6:C (2.79) BS01 ADX 2.7.1.25 GO:0000103 ... P72940 26294763
    70 5cb6:D (2.79) BS01 ADX 2.7.1.25 GO:0000103 ... P72940 26294763
    71 5cb6:E (2.79) BS01 ADX 2.7.1.25 GO:0000103 ... P72940 26294763
    72 5cb6:F (2.79) BS01 ADX 2.7.1.25 GO:0000103 ... P72940 26294763
    73 5cb8:A (1.88) BS01 ADX 2.7.1.25 GO:0000103 ... P72940 26294763 MOAD: Ki=18.2uM
    74 5cb8:B (1.88) BS01 ADX 2.7.1.25 GO:0000103 ... P72940 26294763 MOAD: Ki=18.2uM
    75 7fha:A (2.0) BS01 ADX 2.7.1.25
    2.7.7.4    		 GO:0000103 ... O95340 34818583
    76 7fha:B (2.0) BS01 ADX 2.7.1.25
    2.7.7.4    		 GO:0000103 ... O95340 34818583
    77 7lhs:A (3.11) BS02 ADX 1.8.4.10 GO:0003824 ... P9WIK3 34095667
    78 7lhs:B (3.11) BS02 ADX 1.8.4.10 GO:0003824 ... P9WIK3 34095667
    79 7yq1:A (1.91) BS01 ADX 2.7.1.25 GO:0000103 ... A0A101DF63 36592583
    80 7yq1:B (1.91) BS01 ADX 2.7.1.25 GO:0000103 ... A0A101DF63 36592583
    81 7yq1:C (1.91) BS01 ADX 2.7.1.25 GO:0000103 ... A0A101DF63 36592583
    82 7yq1:D (1.91) BS01 ADX 2.7.1.25 GO:0000103 ... A0A101DF63 36592583
    83 7yq1:E (1.91) BS01 ADX 2.7.1.25 GO:0000103 ... A0A101DF63 36592583
    84 7yq1:F (1.91) BS01 ADX 2.7.1.25 GO:0000103 ... A0A101DF63 36592583
    85 8i1m:A (1.699) BS02 ADX 2.7.1.25
    2.7.7.4    		 GO:0000103 ... O43252 37207644
    86 8i1n:B (2.8) BS02 ADX 2.7.1.25
    2.7.7.4    		 GO:0000103 ... O95340 37207644
    87 8i1n:C (2.8) BS02 ADX 2.7.1.25
    2.7.7.4    		 GO:0000103 ... O95340 37207644
    88 8i1o:A (2.4) BS02 ADX 2.7.1.25
    2.7.7.4    		 GO:0000103 ... O95340 37207644
    89 8i1o:B (2.4) BS02 ADX 2.7.1.25
    2.7.7.4    		 GO:0000103 ... O95340 37207644
    90 8i1o:C (2.4) BS02 ADX 2.7.1.25
    2.7.7.4    		 GO:0000103 ... O95340 37207644
    91 8i1o:D (2.4) BS02 ADX 2.7.1.25
    2.7.7.4    		 GO:0000103 ... O95340 37207644
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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