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BioLiP
Download all results in tab-seperated text for 12079 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    12001 9b27:C (3.51) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    12002 9b27:D (3.51) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    12003 9b27:E (3.51) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    12004 9b27:F (3.51) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    12005 9b3d:A (3.41) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    12006 9b3d:B (3.41) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    12007 9b3d:C (3.41) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    12008 9b3d:D (3.41) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    12009 9b3d:E (3.41) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    12010 9b3d:F (3.41) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    12011 9b3q:A (3.6) BS01 ADP 3.6.4.- GO:0000146 ... P68032 N/A
    12012 9b3q:D (3.6) BS01 ADP 3.6.4.- GO:0000146 ... P68032 N/A
    12013 9b3q:E (3.6) BS01 ADP 3.6.4.- GO:0000146 ... P68032 N/A
    12014 9b3r:A (3.5) BS01 ADP 3.6.4.- GO:0000146 ... P68032 N/A
    12015 9b3r:D (3.5) BS01 ADP 3.6.4.- GO:0000146 ... P68032 N/A
    12016 9b3r:E (3.5) BS01 ADP 3.6.4.- GO:0000146 ... P68032 N/A
    12017 9b8p:A (3.2) BS01 ADP N/A GO:0000221 ... D4A133 38900912
    12018 9b8p:D (3.2) BS01 ADP N/A GO:0000221 ... P62815 38900912
    12019 9bks:A (1.17) BS01 ADP N/A N/A Q14669 N/A
    12020 9bkz:A (2.35) BS01 ADP 2.7.1.24 GO:0004140 ... A0A0H3FR62 N/A
    12021 9bkz:B (2.35) BS02 ADP 2.7.1.24 GO:0004140 ... A0A0H3FR62 N/A
    12022 9boq:A (3.33) BS01 ADP N/A N/A P55072 39122922
    12023 9boq:A (3.33) BS02 ADP N/A N/A P55072 39122922
    12024 9boq:B (3.33) BS01 ADP N/A N/A P55072 39122922
    12025 9boq:B (3.33) BS02 ADP N/A N/A P55072 39122922
    12026 9boq:C (3.33) BS01 ADP N/A N/A P55072 39122922
    12027 9boq:C (3.33) BS02 ADP N/A N/A P55072 39122922
    12028 9boq:D (3.33) BS01 ADP N/A N/A P55072 39122922
    12029 9boq:D (3.33) BS02 ADP N/A N/A P55072 39122922
    12030 9boq:E (3.33) BS01 ADP N/A N/A P55072 39122922
    12031 9boq:E (3.33) BS02 ADP N/A N/A P55072 39122922
    12032 9boq:F (3.33) BS01 ADP N/A N/A P55072 39122922
    12033 9boq:F (3.33) BS02 ADP N/A N/A P55072 39122922
    12034 9boq:G (3.33) BS01 ADP N/A N/A P55072 39122922
    12035 9boq:G (3.33) BS02 ADP N/A N/A P55072 39122922
    12036 9boq:H (3.33) BS01 ADP N/A N/A P55072 39122922
    12037 9boq:H (3.33) BS02 ADP N/A N/A P55072 39122922
    12038 9boq:I (3.33) BS01 ADP N/A N/A P55072 39122922
    12039 9boq:I (3.33) BS02 ADP N/A N/A P55072 39122922
    12040 9boq:J (3.33) BS01 ADP N/A N/A P55072 39122922
    12041 9boq:J (3.33) BS02 ADP N/A N/A P55072 39122922
    12042 9boq:K (3.33) BS01 ADP N/A N/A P55072 39122922
    12043 9boq:K (3.33) BS02 ADP N/A N/A P55072 39122922
    12044 9boq:L (3.33) BS01 ADP N/A N/A P55072 39122922
    12045 9boq:L (3.33) BS02 ADP N/A N/A P55072 39122922
    12046 9brd:A (3.5) BS01 ADP N/A GO:0000221 ... D4A133 38900912
    12047 9c62:A (5.28) BS01 ADP N/A N/A Q9Y265 39088653
    12048 9c62:B (5.28) BS01 ADP N/A N/A Q9Y230 39088653
    12049 9c62:C (5.28) BS01 ADP N/A N/A Q9Y265 39088653
    12050 9c62:D (5.28) BS01 ADP N/A N/A Q9Y230 39088653
    12051 9c62:E (5.28) BS01 ADP N/A N/A Q9Y265 39088653
    12052 9c62:F (5.28) BS01 ADP N/A N/A Q9Y230 39088653
    12053 9cc0:E (3.31) BS02 ADP N/A N/A P36776 38979310
    12054 9cc0:F (3.31) BS01 ADP N/A N/A P36776 38979310
    12055 9cc3:B (3.23) BS01 ADP N/A N/A P36776 38979310
    12056 9cc3:C (3.23) BS01 ADP N/A N/A P36776 38979310
    12057 9cc3:D (3.23) BS01 ADP N/A N/A P36776 38979310
    12058 9cc3:E (3.23) BS01 ADP N/A N/A P36776 38979310
    12059 9f6c:A (2.33) BS03 ADP N/A N/A Q9BE39 39196032
    12060 9f6c:B (2.33) BS03 ADP N/A N/A Q9BE39 39196032
    12061 9fjm:A (3.65) BS02 ADP N/A N/A P60709 N/A
    12062 9fjm:B (3.65) BS03 ADP N/A N/A P60709 N/A
    12063 9fjm:C (3.65) BS02 ADP N/A N/A P60709 N/A
    12064 9fjm:D (3.65) BS03 ADP N/A N/A P60709 N/A
    12065 9fjo:A (3.05) BS01 ADP N/A N/A P68135 N/A
    12066 9fjo:B (3.05) BS01 ADP N/A N/A P68135 N/A
    12067 9fjo:C (3.05) BS01 ADP N/A N/A P68135 N/A
    12068 9fjo:D (3.05) BS01 ADP N/A N/A P68135 N/A
    12069 9fju:A (3.84) BS02 ADP N/A N/A P60712 N/A
    12070 9fju:B (3.84) BS02 ADP N/A N/A P60712 N/A
    12071 9fju:C (3.84) BS02 ADP N/A N/A P60712 N/A
    12072 9fju:D (3.84) BS02 ADP N/A N/A P60712 N/A
    12073 9fjy:A (3.79) BS02 ADP N/A N/A P60712 N/A
    12074 9fjy:B (3.79) BS02 ADP N/A N/A P60712 N/A
    12075 9fjy:C (3.79) BS03 ADP N/A N/A P60712 N/A
    12076 9fjy:D (3.79) BS01 ADP N/A N/A P60712 N/A
    12077 9gd1:W (4.0) BS03 ADP N/A N/A P32657 39270644
    12078 9gd2:W (4.2) BS04 ADP N/A N/A P32657 39270644
    12079 9gd3:W (3.0) BS03 ADP N/A N/A P32657 39270644
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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