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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 12079 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    11801 8wm7:G (3.53) BS01 ADP ? GO:0000166 ... Q9L422 38457518
    11802 8wm7:G (3.53) BS02 ADP ? GO:0000166 ... Q9L422 38457518
    11803 8wmy:A (1.91) BS01 ADP 3.6.1.41 GO:0000166 ... A0A4U7IGH6 N/A
    11804 8wmy:B (1.91) BS01 ADP 3.6.1.41 GO:0000166 ... A0A4U7IGH6 N/A
    11805 8wsm:A (2.7) BS01 ADP 3.6.4.- N/A Q96P20 38116417
    11806 8wuc:A (2.5) BS01 ADP 5.6.1.7 GO:0005524 ... A0A2Z6DW38 38492570
    11807 8wuc:B (2.5) BS01 ADP 5.6.1.7 GO:0005524 ... A0A2Z6DW38 38492570
    11808 8wuc:C (2.5) BS01 ADP 5.6.1.7 GO:0005524 ... A0A2Z6DW38 38492570
    11809 8wuc:D (2.5) BS01 ADP 5.6.1.7 GO:0005524 ... A0A2Z6DW38 38492570
    11810 8wuc:E (2.5) BS01 ADP 5.6.1.7 GO:0005524 ... A0A2Z6DW38 38492570
    11811 8wuc:F (2.5) BS01 ADP 5.6.1.7 GO:0005524 ... A0A2Z6DW38 38492570
    11812 8wuc:G (2.5) BS01 ADP 5.6.1.7 GO:0005524 ... A0A2Z6DW38 38492570
    11813 8wuc:H (2.5) BS01 ADP 5.6.1.7 GO:0005524 ... A0A2Z6DW38 38492570
    11814 8wuc:I (2.5) BS01 ADP 5.6.1.7 GO:0005524 ... A0A2Z6DW38 38492570
    11815 8wuc:J (2.5) BS01 ADP 5.6.1.7 GO:0005524 ... A0A2Z6DW38 38492570
    11816 8wuc:K (2.5) BS01 ADP 5.6.1.7 GO:0005524 ... A0A2Z6DW38 38492570
    11817 8wuc:L (2.5) BS01 ADP 5.6.1.7 GO:0005524 ... A0A2Z6DW38 38492570
    11818 8wuc:M (2.5) BS01 ADP 5.6.1.7 GO:0005524 ... A0A2Z6DW38 38492570
    11819 8wuc:N (2.5) BS01 ADP 5.6.1.7 GO:0005524 ... A0A2Z6DW38 38492570
    11820 8wwv:A (2.3) BS01 ADP 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    11821 8wwv:B (2.3) BS01 ADP 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    11822 8wwv:C (2.3) BS01 ADP 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    11823 8wwv:D (2.3) BS01 ADP 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    11824 8wwv:E (2.3) BS01 ADP 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    11825 8wwv:F (2.3) BS01 ADP 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    11826 8x15:M (3.2) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y265 38331872
    11827 8x15:N (3.2) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y230 38331872
    11828 8x15:O (3.2) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y265 38331872
    11829 8x15:O (3.2) BS02 ADP 3.6.4.12 GO:0000492 ... Q9Y265 38331872
    11830 8x15:P (3.2) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y230 38331872
    11831 8x15:Q (3.2) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y265 38331872
    11832 8x15:R (3.2) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y230 38331872
    11833 8x19:I (3.2) BS03 ADP 3.6.4.- GO:0000786 ... Q6ZRS2 38331872
    11834 8x19:M (3.2) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y265 38331872
    11835 8x19:N (3.2) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y230 38331872
    11836 8x19:O (3.2) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y265 38331872
    11837 8x19:P (3.2) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y230 38331872
    11838 8x19:Q (3.2) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y265 38331872
    11839 8x19:R (3.2) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y230 38331872
    11840 8x1c:I (3.2) BS03 ADP 3.6.4.- GO:0000786 ... Q6ZRS2 38331872
    11841 8x1c:M (3.2) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y265 38331872
    11842 8x1c:N (3.2) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y230 38331872
    11843 8x1c:O (3.2) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y265 38331872
    11844 8x1c:P (3.2) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y230 38331872
    11845 8x1c:Q (3.2) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y265 38331872
    11846 8x1c:R (3.2) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y230 38331872
    11847 8xak:A (3.5) BS02 ADP N/A N/A N/A 39030241
    11848 8xak:C (3.5) BS02 ADP N/A N/A N/A 39030241
    11849 8xaw:A (2.73) BS01 ADP N/A N/A N/A 38834762
    11850 8xaw:E (2.73) BS02 ADP N/A N/A N/A 38834762
    11851 8xaw:F (2.73) BS01 ADP N/A N/A N/A 38834762
    11852 8xax:E (2.92) BS01 ADP N/A N/A N/A 38834762
    11853 8xax:F (2.92) BS01 ADP N/A N/A N/A 38834762
    11854 8xay:E (2.81) BS02 ADP N/A N/A N/A 38834762
    11855 8xay:F (2.81) BS01 ADP N/A N/A N/A 38834762
    11856 8xgc:2 (3.7) BS03 ADP 3.6.4.12 GO:0003677 ... N/A 38448592
    11857 8xgc:2 (3.7) BS04 ADP 3.6.4.12 GO:0003677 ... N/A 38448592
    11858 8xgc:3 (3.7) BS03 ADP 3.6.4.12 GO:0000727 ... P24279 38448592
    11859 8xgc:3 (3.7) BS04 ADP 3.6.4.12 GO:0000727 ... P24279 38448592
    11860 8xgc:4 (3.7) BS03 ADP 3.6.4.12 GO:0000727 ... P30665 38448592
    11861 8xgc:5 (3.7) BS02 ADP 3.6.4.12 GO:0000727 ... P29496 38448592
    11862 8xgc:5 (3.7) BS04 ADP 3.6.4.12 GO:0000727 ... P29496 38448592
    11863 8xgc:6 (3.7) BS02 ADP 3.6.4.12 GO:0000727 ... P53091 38448592
    11864 8xgc:6 (3.7) BS04 ADP 3.6.4.12 GO:0000727 ... P53091 38448592
    11865 8xgc:7 (3.7) BS03 ADP 3.6.4.12 GO:0003677 ... N/A 38448592
    11866 8xn8:A (1.95) BS01 ADP 2.7.10.2 GO:0004672 ... P05480 N/A
    11867 8xon:O (1.96) BS02 ADP ? GO:0005524 ... A0A6G5RIJ6 38501868
    11868 8xon:P (1.96) BS02 ADP ? GO:0005524 ... A0A6G5RIJ6 38501868
    11869 8xon:Q (1.96) BS03 ADP ? GO:0005524 ... A0A6G5RIJ6 38501868
    11870 8xon:T (1.96) BS01 ADP ? GO:0005524 ... A0A6G5RIJ6 38501868
    11871 8xoo:O (1.84) BS02 ADP ? GO:0005524 ... A0A6G5RIJ6 38501868
    11872 8xoo:O (1.84) BS03 ADP ? GO:0005524 ... A0A6G5RIJ6 38501868
    11873 8xoo:P (1.84) BS02 ADP ? GO:0005524 ... A0A6G5RIJ6 38501868
    11874 8xoo:Q (1.84) BS03 ADP ? GO:0005524 ... A0A6G5RIJ6 38501868
    11875 8xoo:S (1.84) BS01 ADP ? GO:0005524 ... A0A6G5RIJ6 38501868
    11876 8xoo:T (1.84) BS01 ADP ? GO:0005524 ... A0A6G5RIJ6 38501868
    11877 8xrg:A (1.61) BS01 ADP N/A N/A Q00942 N/A
    11878 8xsx:CB (2.4) BS03 ADP N/A GO:0002244 ... P13639 38942792
    11879 8xuo:A (2.84) BS01 ADP ? N/A A0A3Q7IF17 38866053
    11880 8xuo:G (2.84) BS01 ADP ? N/A A0A3Q7IF17 38866053
    11881 8xuq:A (3.17) BS02 ADP ? GO:0006952 ... A0A3Q7IF17 38866053
    11882 8xuq:E (3.17) BS02 ADP ? GO:0006952 ... A0A3Q7IF17 38866053
    11883 8xuq:F (3.17) BS02 ADP ? GO:0006952 ... A0A3Q7IF17 38866053
    11884 8xuq:G (3.17) BS02 ADP ? GO:0006952 ... A0A3Q7IF17 38866053
    11885 8xuv:A (3.6) BS02 ADP ? GO:0006952 ... A0A3Q7IF17 38866053
    11886 8xuv:B (3.6) BS02 ADP ? GO:0006952 ... A0A3Q7IF17 38866053
    11887 8xuv:C (3.6) BS02 ADP ? GO:0006952 ... A0A3Q7IF17 38866053
    11888 8xuv:D (3.6) BS02 ADP ? GO:0006952 ... A0A3Q7IF17 38866053
    11889 8xuv:E (3.6) BS02 ADP ? GO:0006952 ... A0A3Q7IF17 38866053
    11890 8xuv:F (3.6) BS02 ADP ? GO:0006952 ... A0A3Q7IF17 38866053
    11891 8xuv:G (3.6) BS02 ADP ? GO:0006952 ... A0A3Q7IF17 38866053
    11892 8xuv:H (3.6) BS02 ADP ? GO:0006952 ... A0A3Q7IF17 38866053
    11893 8xuv:I (3.6) BS02 ADP ? GO:0006952 ... A0A3Q7IF17 38866053
    11894 8xuv:J (3.6) BS02 ADP ? GO:0006952 ... A0A3Q7IF17 38866053
    11895 8xuv:K (3.6) BS02 ADP ? GO:0006952 ... A0A3Q7IF17 38866053
    11896 8xuv:L (3.6) BS02 ADP ? GO:0006952 ... A0A3Q7IF17 38866053
    11897 8xvc:A (4.32) BS01 ADP N/A N/A P03763 39085263
    11898 8xvc:B (4.32) BS01 ADP N/A N/A P03763 39085263
    11899 8xvc:C (4.32) BS01 ADP N/A N/A P03763 39085263
    11900 8xvc:D (4.32) BS01 ADP N/A N/A P03763 39085263
    11901 8xvc:E (4.32) BS01 ADP N/A N/A P03763 39085263
    11902 8xvc:F (4.32) BS01 ADP N/A N/A P03763 39085263
    11903 8xvc:G (4.32) BS01 ADP N/A N/A P03763 39085263
    11904 8xvc:H (4.32) BS01 ADP N/A N/A P03763 39085263
    11905 8xvc:I (4.32) BS01 ADP N/A N/A P03763 39085263
    11906 8xvc:J (4.32) BS01 ADP N/A N/A P03763 39085263
    11907 8xvc:K (4.32) BS01 ADP N/A N/A P03763 39085263
    11908 8xvc:L (4.32) BS01 ADP N/A N/A P03763 39085263
    11909 8xvc:M (4.32) BS01 ADP N/A N/A P03763 39085263
    11910 8xvc:N (4.32) BS01 ADP N/A N/A P03763 39085263
    11911 8xvc:O (4.32) BS01 ADP N/A N/A P03763 39085263
    11912 8xvc:P (4.32) BS01 ADP N/A N/A P03763 39085263
    11913 8xvc:Q (4.32) BS01 ADP N/A N/A P03763 39085263
    11914 8xvc:R (4.32) BS01 ADP N/A N/A P03763 39085263
    11915 8xvd:A (4.43) BS01 ADP N/A N/A P03763 39085263
    11916 8xvd:B (4.43) BS01 ADP N/A N/A P03763 39085263
    11917 8xvd:C (4.43) BS01 ADP N/A N/A P03763 39085263
    11918 8xvd:D (4.43) BS01 ADP N/A N/A P03763 39085263
    11919 8xvd:E (4.43) BS01 ADP N/A N/A P03763 39085263
    11920 8xvd:F (4.43) BS01 ADP N/A N/A P03763 39085263
    11921 8xvd:G (4.43) BS01 ADP N/A N/A P03763 39085263
    11922 8xvd:H (4.43) BS01 ADP N/A N/A P03763 39085263
    11923 8xvd:I (4.43) BS01 ADP N/A N/A P03763 39085263
    11924 8xvd:J (4.43) BS01 ADP N/A N/A P03763 39085263
    11925 8xvd:K (4.43) BS01 ADP N/A N/A P03763 39085263
    11926 8xvd:L (4.43) BS01 ADP N/A N/A P03763 39085263
    11927 8xvd:M (4.43) BS01 ADP N/A N/A P03763 39085263
    11928 8xvd:N (4.43) BS01 ADP N/A N/A P03763 39085263
    11929 8xvd:O (4.43) BS01 ADP N/A N/A P03763 39085263
    11930 8xvd:P (4.43) BS01 ADP N/A N/A P03763 39085263
    11931 8xvd:Q (4.43) BS01 ADP N/A N/A P03763 39085263
    11932 8xvd:R (4.43) BS01 ADP N/A N/A P03763 39085263
    11933 8xvd:S (4.43) BS01 ADP N/A N/A P03763 39085263
    11934 8xvd:T (4.43) BS01 ADP N/A N/A P03763 39085263
    11935 8xvg:A (9.4) BS01 ADP N/A GO:0000492 ... Q9Y265 39154037
    11936 8xvg:B (9.4) BS01 ADP N/A GO:0000492 ... Q9Y230 39154037
    11937 8xvg:B (9.4) BS02 ADP N/A GO:0000492 ... Q9Y230 39154037
    11938 8xvg:C (9.4) BS01 ADP N/A GO:0000492 ... Q9Y265 39154037
    11939 8xvg:D (9.4) BS01 ADP N/A GO:0000492 ... Q9Y230 39154037
    11940 8xvg:E (9.4) BS01 ADP N/A GO:0000492 ... Q9Y265 39154037
    11941 8xvg:F (9.4) BS01 ADP N/A GO:0000492 ... Q9Y230 39154037
    11942 8xvg:I (9.4) BS01 ADP N/A GO:0000723 ... O96019 39154037
    11943 8xvg:J (9.4) BS01 ADP N/A GO:0000723 ... O96019 39154037
    11944 8xvg:K (9.4) BS01 ADP N/A N/A A0A7K5XZZ2 39154037
    11945 8xvt:A (3.2) BS01 ADP N/A GO:0000492 ... Q9Y265 39154037
    11946 8xvt:B (3.2) BS01 ADP N/A GO:0000492 ... Q9Y230 39154037
    11947 8xvt:B (3.2) BS02 ADP N/A GO:0000492 ... Q9Y230 39154037
    11948 8xvt:C (3.2) BS01 ADP N/A GO:0000492 ... Q9Y265 39154037
    11949 8xvt:D (3.2) BS01 ADP N/A GO:0000492 ... Q9Y230 39154037
    11950 8xvt:E (3.2) BS01 ADP N/A GO:0000492 ... Q9Y265 39154037
    11951 8xvt:F (3.2) BS01 ADP N/A GO:0000492 ... Q9Y230 39154037
    11952 8xvt:I (3.2) BS01 ADP N/A GO:0000723 ... O96019 39154037
    11953 8xvt:J (3.2) BS01 ADP N/A GO:0000723 ... O96019 39154037
    11954 8xvt:K (3.2) BS01 ADP N/A GO:0000079 ... P60709 39154037
    11955 8xw7:A (2.1) BS04 ADP N/A GO:0004743 ... Q8DQ84 39009072
    11956 8xw7:B (2.1) BS04 ADP N/A GO:0004743 ... Q8DQ84 39009072
    11957 8yhh:A (1.95) BS01 ADP ? GO:0003777 ... P52732 N/A
    11958 8yhh:B (1.95) BS01 ADP ? GO:0003777 ... P52732 N/A
    11959 8yk9:B (3.4) BS01 ADP N/A N/A Q981B4 39077943
    11960 8yk9:C (3.4) BS01 ADP N/A N/A Q981B4 39077943
    11961 8yk9:D (3.4) BS01 ADP N/A N/A Q981B4 39077943
    11962 8yk9:D (3.4) BS02 ADP N/A N/A Q981B4 39077943
    11963 8yt5:A (1.6) BS01 ADP 3.6.1.41 GO:0000166 ... A0A0H2URF8 38701795
    11964 9az4:A (3.37) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    11965 9az4:B (3.37) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    11966 9az4:C (3.37) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    11967 9az4:D (3.37) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    11968 9az4:E (3.37) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    11969 9az4:F (3.37) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    11970 9azp:A (3.79) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    11971 9azp:B (3.79) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    11972 9azp:C (3.79) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    11973 9azp:D (3.79) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    11974 9azp:E (3.79) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    11975 9azp:F (3.79) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    11976 9azq:A (3.82) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    11977 9azq:B (3.82) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    11978 9azq:C (3.82) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    11979 9azq:D (3.82) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    11980 9azq:E (3.82) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    11981 9azq:F (3.82) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    11982 9azq:I (3.82) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    11983 9b03:A (2.95) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    11984 9b03:B (2.95) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    11985 9b03:C (2.95) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    11986 9b03:D (2.95) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    11987 9b03:E (2.95) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    11988 9b03:F (2.95) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    11989 9b0e:A (3.19) BS01 ADP N/A N/A G0S273 38585770
    11990 9b0e:B (3.19) BS01 ADP N/A N/A G0S273 38585770
    11991 9b0i:A (3.02) BS01 ADP N/A N/A G0S273 38585770
    11992 9b0i:B (3.02) BS01 ADP N/A N/A G0S273 38585770
    11993 9b0k:A (3.03) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    11994 9b0k:B (3.03) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    11995 9b0k:C (3.03) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    11996 9b0k:D (3.03) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    11997 9b0k:E (3.03) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    11998 9b0k:F (3.03) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    11999 9b27:A (3.51) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    12000 9b27:B (3.51) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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