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BioLiP
Download all results in tab-seperated text for 12079 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1001 2d3a:I (2.63) BS05 ADP 6.3.1.2 GO:0003824 ... P38561 16829528
    1002 2d3a:J (2.63) BS05 ADP 6.3.1.2 GO:0003824 ... P38561 16829528
    1003 2d3c:A (3.81) BS05 ADP 6.3.1.2 GO:0003824 ... P38561 16829528
    1004 2d3c:B (3.81) BS05 ADP 6.3.1.2 GO:0003824 ... P38561 16829528
    1005 2d3c:C (3.81) BS05 ADP 6.3.1.2 GO:0003824 ... P38561 16829528
    1006 2d3c:D (3.81) BS05 ADP 6.3.1.2 GO:0003824 ... P38561 16829528
    1007 2d3c:E (3.81) BS05 ADP 6.3.1.2 GO:0003824 ... P38561 16829528
    1008 2d3c:F (3.81) BS05 ADP 6.3.1.2 GO:0003824 ... P38561 16829528
    1009 2d3c:G (3.81) BS05 ADP 6.3.1.2 GO:0003824 ... P38561 16829528
    1010 2d3c:H (3.81) BS05 ADP 6.3.1.2 GO:0003824 ... P38561 16829528
    1011 2d3c:I (3.81) BS05 ADP 6.3.1.2 GO:0003824 ... P38561 16829528
    1012 2d3c:J (3.81) BS05 ADP 6.3.1.2 GO:0003824 ... P38561 16829528
    1013 2d7d:A (2.1) BS02 ADP 3.1.-.- GO:0003677 ... P37954 16426634
    1014 2dcn:A (2.25) BS02 ADP 2.7.1.45 GO:0005524 ... Q96XN9 N/A
    1015 2dcn:B (2.25) BS02 ADP 2.7.1.45 GO:0005524 ... Q96XN9 N/A
    1016 2dcn:C (2.25) BS02 ADP 2.7.1.45 GO:0005524 ... Q96XN9 N/A
    1017 2dcn:D (2.25) BS02 ADP 2.7.1.45 GO:0005524 ... Q96XN9 N/A
    1018 2dcn:E (2.25) BS02 ADP 2.7.1.45 GO:0005524 ... Q96XN9 N/A
    1019 2dcn:F (2.25) BS02 ADP 2.7.1.45 GO:0005524 ... Q96XN9 N/A
    1020 2dcn:G (2.25) BS02 ADP 2.7.1.45 GO:0005524 ... Q96XN9 N/A
    1021 2dcn:H (2.25) BS02 ADP 2.7.1.45 GO:0005524 ... Q96XN9 N/A
    1022 2dcn:I (2.25) BS02 ADP 2.7.1.45 GO:0005524 ... Q96XN9 N/A
    1023 2dcn:J (2.25) BS02 ADP 2.7.1.45 GO:0005524 ... Q96XN9 N/A
    1024 2dcn:K (2.25) BS02 ADP 2.7.1.45 GO:0005524 ... Q96XN9 N/A
    1025 2dcn:L (2.25) BS02 ADP 2.7.1.45 GO:0005524 ... Q96XN9 N/A
    1026 2dfn:A (1.93) BS02 ADP 2.7.1.71 GO:0000287 ... P9WPY3 17183161
    1027 2dft:A (2.8) BS02 ADP 2.7.1.71 GO:0000287 ... P9WPY3 17183161
    1028 2dft:B (2.8) BS02 ADP 2.7.1.71 GO:0000287 ... P9WPY3 17183161
    1029 2dft:C (2.8) BS01 ADP 2.7.1.71 GO:0000287 ... P9WPY3 17183161
    1030 2dft:D (2.8) BS02 ADP 2.7.1.71 GO:0000287 ... P9WPY3 17183161
    1031 2dhr:A (3.9) BS01 ADP 3.4.24.- GO:0004176 ... Q5SI82 16762831
    1032 2dhr:B (3.9) BS01 ADP 3.4.24.- GO:0004176 ... Q5SI82 16762831
    1033 2dhr:C (3.9) BS01 ADP 3.4.24.- GO:0004176 ... Q5SI82 16762831
    1034 2dhr:D (3.9) BS01 ADP 3.4.24.- GO:0004176 ... Q5SI82 16762831
    1035 2dhr:E (3.9) BS01 ADP 3.4.24.- GO:0004176 ... Q5SI82 16762831
    1036 2dhr:F (3.9) BS01 ADP 3.4.24.- GO:0004176 ... Q5SI82 16762831
    1037 2dln:A (2.3) BS03 ADP 6.3.2.4 GO:0003824 ... P07862 7939684
    1038 2dpy:B (2.4) BS01 ADP 7.1.2.2 GO:0005515 ... P26465 17202259
    1039 2dr3:A (2.0) BS01 ADP ? GO:0005524 ... O58022 N/A
    1040 2dr3:A (2.0) BS02 ADP ? GO:0005524 ... O58022 N/A
    1041 2dr3:B (2.0) BS01 ADP ? GO:0005524 ... O58022 N/A
    1042 2dr3:B (2.0) BS02 ADP ? GO:0005524 ... O58022 N/A
    1043 2dr3:C (2.0) BS01 ADP ? GO:0005524 ... O58022 N/A
    1044 2dr3:C (2.0) BS02 ADP ? GO:0005524 ... O58022 N/A
    1045 2dr3:D (2.0) BS01 ADP ? GO:0005524 ... O58022 N/A
    1046 2dr3:D (2.0) BS02 ADP ? GO:0005524 ... O58022 N/A
    1047 2dr3:E (2.0) BS01 ADP ? GO:0005524 ... O58022 N/A
    1048 2dr3:E (2.0) BS02 ADP ? GO:0005524 ... O58022 N/A
    1049 2dr3:F (2.0) BS01 ADP ? GO:0005524 ... O58022 N/A
    1050 2dr3:F (2.0) BS02 ADP ? GO:0005524 ... O58022 N/A
    1051 2dth:A (1.95) BS01 ADP 6.3.4.15 GO:0004077 ... O57883 N/A
    1052 2dth:B (1.95) BS01 ADP 6.3.4.15 GO:0004077 ... O57883 N/A
    1053 2dwc:A (1.7) BS01 ADP 6.3.1.21 GO:0000287 ... O58056 N/A
    1054 2dwc:B (1.7) BS01 ADP 6.3.1.21 GO:0000287 ... O58056 N/A
    1055 2dwo:A (2.25) BS02 ADP 2.7.1.105
    3.1.3.46
    GO:0003824 ... Q16875 17499765
    1056 2dy9:A (2.01) BS01 ADP 2.7.4.6 GO:0004550 ... O58429 N/A
    1057 2dya:A (1.77) BS01 ADP 2.7.4.6 GO:0004550 ... O58429 N/A
    1058 2dya:B (1.77) BS01 ADP 2.7.4.6 GO:0004550 ... O58429 N/A
    1059 2e2p:A (2.0) BS01 ADP 2.7.1.1 GO:0000166 ... Q96Y14 17229727 MOAD: Ki=18uM
    PDBbind: -logKd/Ki=4.74, Ki=18uM
    1060 2e2p:B (2.0) BS01 ADP 2.7.1.1 GO:0000166 ... Q96Y14 17229727 MOAD: Ki=18uM
    1061 2e2q:A (2.0) BS02 ADP 2.7.1.1 GO:0000166 ... Q96Y14 17229727
    1062 2e2q:B (2.0) BS01 ADP 2.7.1.1 GO:0000166 ... Q96Y14 17229727
    1063 2eck:A (2.8) BS02 ADP 2.7.4.3 GO:0000287 ... P69441 16302237
    1064 2eck:B (2.8) BS02 ADP 2.7.4.3 GO:0000287 ... P69441 16302237
    1065 2ewv:A (2.8) BS01 ADP ? GO:0005524 ... O66950 17355871
    1066 2f1j:A (2.3) BS02 ADP ? GO:0000166 ... O73948 16782126
    1067 2f43:B (3.0) BS03 ADP 7.1.2.2 GO:0001525 ... P10719 16531409
    1068 2f9g:A (2.1) BS02 ADP 2.7.11.24 GO:0000749 ... P16892 16424299
    1069 2ff7:A (1.6) BS01 ADP ? GO:0005524 ... P08716 16858415 MOAD: Kd=7.1uM
    1070 2ffa:A (1.7) BS01 ADP ? GO:0005524 ... P08716 16858415
    1071 2ffb:A (1.9) BS01 ADP ? GO:0005524 ... P08716 16858415
    1072 2fky:A (2.3) BS01 ADP ? GO:0003777 ... P52732 16439123
    1073 2fky:B (2.3) BS01 ADP ? GO:0003777 ... P52732 16439123
    1074 2fl2:A (2.5) BS01 ADP ? GO:0003777 ... P52732 16439123
    1075 2fl2:B (2.5) BS01 ADP ? GO:0003777 ... P52732 16439123
    1076 2fl6:A (2.5) BS01 ADP ? GO:0003777 ... P52732 16439123
    1077 2fl6:B (2.5) BS01 ADP ? GO:0003777 ... P52732 16439123
    1078 2fme:A (2.1) BS02 ADP ? GO:0003777 ... P52732 16458511
    1079 2fme:B (2.1) BS02 ADP ? GO:0003777 ... P52732 16458511
    1080 2fna:A (2.0) BS01 ADP ? GO:0000166 ... Q97Y08 19089981
    1081 2fna:B (2.0) BS01 ADP ? GO:0000166 ... Q97Y08 19089981
    1082 2fpk:A (2.1) BS02 ADP ? GO:0000166 ... O73948 16229465
    1083 2fsi:A (2.11) BS01 ADP 7.4.2.8 GO:0005515 ... P10408 17229438
    1084 2fsi:B (2.11) BS01 ADP 7.4.2.8 GO:0005515 ... P10408 17229438
    1085 2fsn:A (2.9) BS01 ADP ? GO:0005524 ... Q9HKL4 16500678
    1086 2fsn:B (2.9) BS01 ADP ? GO:0005524 ... Q9HKL4 16500678
    1087 2fv7:A (2.1) BS01 ADP 2.7.1.15 GO:0004747 ... Q9H477 N/A
    1088 2fv7:B (2.1) BS01 ADP 2.7.1.15 GO:0004747 ... Q9H477 N/A
    1089 2fyk:A (1.6) BS01 ADP 6.3.4.15 GO:0004077 ... O57883 N/A
    1090 2fyk:B (1.6) BS01 ADP 6.3.4.15 GO:0004077 ... O57883 N/A
    1091 2g1q:A (2.51) BS01 ADP ? GO:0003777 ... P52732 16603356
    1092 2g1q:B (2.51) BS01 ADP ? GO:0003777 ... P52732 16603356
    1093 2g2i:A (3.12) BS02 ADP 2.7.10.2 GO:0004672 ... P00519 16640460
    1094 2g2i:B (3.12) BS02 ADP 2.7.10.2 GO:0004672 ... P00519 16640460
    1095 2g5i:B (3.35) BS02 ADP 6.3.5.- GO:0003824 ... P64201 16809541
    1096 2gk6:A (2.4) BS02 ADP 3.6.4.12
    3.6.4.13
    GO:0003677 ... Q92900 17159905
    1097 2gk6:B (2.4) BS02 ADP 3.6.4.12
    3.6.4.13
    GO:0003677 ... Q92900 17159905
    1098 2gks:A (2.31) BS01 ADP 2.7.1.25
    2.7.7.4
    GO:0000103 ... O67174 17095009
    1099 2gks:A (2.31) BS02 ADP 2.7.1.25
    2.7.7.4
    GO:0000103 ... O67174 17095009
    1100 2gks:B (2.31) BS01 ADP 2.7.1.25
    2.7.7.4
    GO:0000103 ... O67174 17095009
    1101 2gks:B (2.31) BS02 ADP 2.7.1.25
    2.7.7.4
    GO:0000103 ... O67174 17095009
    1102 2gm1:A (2.3) BS03 ADP ? GO:0003777 ... P52732 16730979
    1103 2gm1:B (2.3) BS03 ADP ? GO:0003777 ... P52732 16730979
    1104 2gm1:D (2.3) BS03 ADP ? GO:0003777 ... P52732 16730979
    1105 2gm1:E (2.3) BS01 ADP ? GO:0003777 ... P52732 16730979
    1106 2gm1:E (2.3) BS04 ADP ? GO:0003777 ... P52732 16730979
    1107 2gqr:A (2.0) BS01 ADP 6.3.2.6 GO:0004639 ... P0A7D7 16687397
    1108 2gqr:B (2.0) BS01 ADP 6.3.2.6 GO:0004639 ... P0A7D7 16687397
    1109 2gqs:A (2.05) BS03 ADP 6.3.2.6 GO:0004639 ... P0A7D7 16687397
    1110 2gqs:B (2.05) BS03 ADP 6.3.2.6 GO:0004639 ... P0A7D7 16687397
    1111 2gr0:A (1.7) BS02 ADP 1.18.1.2 GO:0000166 ... Q52437 17850818
    1112 2grj:A (2.6) BS01 ADP 2.7.1.24 GO:0004140 ... Q9X1A7 N/A
    1113 2grj:A (2.6) BS03 ADP 2.7.1.24 GO:0004140 ... Q9X1A7 N/A
    1114 2grj:B (2.6) BS01 ADP 2.7.1.24 GO:0004140 ... Q9X1A7 N/A
    1115 2grj:B (2.6) BS02 ADP 2.7.1.24 GO:0004140 ... Q9X1A7 N/A
    1116 2grj:C (2.6) BS01 ADP 2.7.1.24 GO:0004140 ... Q9X1A7 N/A
    1117 2grj:C (2.6) BS03 ADP 2.7.1.24 GO:0004140 ... Q9X1A7 N/A
    1118 2grj:D (2.6) BS01 ADP 2.7.1.24 GO:0004140 ... Q9X1A7 N/A
    1119 2grj:D (2.6) BS02 ADP 2.7.1.24 GO:0004140 ... Q9X1A7 N/A
    1120 2grj:E (2.6) BS01 ADP 2.7.1.24 GO:0004140 ... Q9X1A7 N/A
    1121 2grj:E (2.6) BS03 ADP 2.7.1.24 GO:0004140 ... Q9X1A7 N/A
    1122 2grj:F (2.6) BS01 ADP 2.7.1.24 GO:0004140 ... Q9X1A7 N/A
    1123 2grj:F (2.6) BS02 ADP 2.7.1.24 GO:0004140 ... Q9X1A7 N/A
    1124 2grj:G (2.6) BS01 ADP 2.7.1.24 GO:0004140 ... Q9X1A7 N/A
    1125 2grj:G (2.6) BS03 ADP 2.7.1.24 GO:0004140 ... Q9X1A7 N/A
    1126 2grj:H (2.6) BS01 ADP 2.7.1.24 GO:0004140 ... Q9X1A7 N/A
    1127 2grj:H (2.6) BS02 ADP 2.7.1.24 GO:0004140 ... Q9X1A7 N/A
    1128 2gry:A (2.35) BS01 ADP ? GO:0003777 ... O00139 N/A
    1129 2gsz:F (4.2) BS01 ADP ? GO:0005524 ... O66950 17355871
    1130 2gxa:A (3.15) BS01 ADP 3.6.4.12 GO:0003677 ... P03116 16855583
    1131 2gxa:B (3.15) BS02 ADP 3.6.4.12 GO:0003677 ... P03116 16855583
    1132 2gxa:B (3.15) BS03 ADP 3.6.4.12 GO:0003677 ... P03116 16855583
    1133 2gxa:C (3.15) BS02 ADP 3.6.4.12 GO:0003677 ... P03116 16855583
    1134 2gxa:C (3.15) BS04 ADP 3.6.4.12 GO:0003677 ... P03116 16855583
    1135 2gxa:D (3.15) BS02 ADP 3.6.4.12 GO:0003677 ... P03116 16855583
    1136 2gxa:D (3.15) BS03 ADP 3.6.4.12 GO:0003677 ... P03116 16855583
    1137 2gxa:E (3.15) BS02 ADP 3.6.4.12 GO:0003677 ... P03116 16855583
    1138 2gxa:F (3.15) BS02 ADP 3.6.4.12 GO:0003677 ... P03116 16855583
    1139 2gxa:G (3.15) BS02 ADP 3.6.4.12 GO:0003677 ... P03116 16855583
    1140 2gxa:H (3.15) BS02 ADP 3.6.4.12 GO:0003677 ... P03116 16855583
    1141 2gxa:H (3.15) BS04 ADP 3.6.4.12 GO:0003677 ... P03116 16855583
    1142 2gxa:I (3.15) BS02 ADP 3.6.4.12 GO:0003677 ... P03116 16855583
    1143 2gxa:I (3.15) BS03 ADP 3.6.4.12 GO:0003677 ... P03116 16855583
    1144 2gxa:J (3.15) BS02 ADP 3.6.4.12 GO:0003677 ... P03116 16855583
    1145 2gxa:K (3.15) BS02 ADP 3.6.4.12 GO:0003677 ... P03116 16855583
    1146 2gxa:L (3.15) BS02 ADP 3.6.4.12 GO:0003677 ... P03116 16855583
    1147 2h1f:A (2.4) BS01 ADP 2.4.99.23 GO:0000166 ... A0A0H2VC26 16963083
    1148 2h1f:B (2.4) BS01 ADP 2.4.99.23 GO:0000166 ... A0A0H2VC26 16963083
    1149 2heh:A (2.15) BS01 ADP ? GO:0003777 ... Q99661 N/A
    1150 2hen:A (2.6) BS01 ADP 2.7.10.1 GO:0004672 ... P54763 16977320
    1151 2hen:B (2.6) BS02 ADP 2.7.10.1 GO:0004672 ... P54763 16977320
    1152 2hen:C (2.6) BS01 ADP 2.7.10.1 GO:0004672 ... P54763 16977320
    1153 2hen:D (2.6) BS01 ADP 2.7.10.1 GO:0004672 ... P54763 16977320
    1154 2hf3:A (1.8) BS02 ADP 3.6.4.- GO:0000281 ... P10987 16920713
    1155 2hgs:A (2.1) BS04 ADP 6.3.2.3 GO:0000287 ... P48637 10369661
    1156 2hmf:A (2.7) BS01 ADP 2.7.2.4 GO:0003824 ... Q57991 17012784
    1157 2hmf:B (2.7) BS01 ADP 2.7.2.4 GO:0003824 ... Q57991 17012784
    1158 2hmf:C (2.7) BS01 ADP 2.7.2.4 GO:0003824 ... Q57991 17012784
    1159 2hmf:D (2.7) BS01 ADP 2.7.2.4 GO:0003824 ... Q57991 17012784
    1160 2hmv:A (2.2) BS01 ADP ? GO:0006813 ... O32080 16990138 PDBbind: -logKd/Ki=7.70, Kd=20nM
    1161 2hmv:B (2.2) BS01 ADP ? GO:0006813 ... O32080 16990138 PDBbind: -logKd/Ki=7.70, Kd=20nM
    1162 2hru:A (2.8) BS03 ADP 6.3.5.3 GO:0000287 ... Q9X0X3 17154526
    1163 2hv7:B (2.5) BS01 ADP 5.2.1.8 GO:0000159 ... Q15257 16916641
    1164 2hv7:C (2.5) BS01 ADP 5.2.1.8 GO:0000159 ... Q15257 16916641
    1165 2hv7:E (2.5) BS01 ADP 5.2.1.8 GO:0000159 ... Q15257 16916641
    1166 2hv7:G (2.5) BS01 ADP 5.2.1.8 GO:0000159 ... Q15257 16916641
    1167 2hvd:A (2.15) BS01 ADP 2.7.4.6 GO:0000287 ... P15531 16944299
    1168 2hvd:B (2.15) BS01 ADP 2.7.4.6 GO:0000287 ... P15531 16944299
    1169 2hvd:C (2.15) BS01 ADP 2.7.4.6 GO:0000287 ... P15531 16944299
    1170 2hve:A (2.402) BS01 ADP 2.7.4.6 GO:0000287 ... P15531 16944299
    1171 2hve:B (2.402) BS01 ADP 2.7.4.6 GO:0000287 ... P15531 16944299
    1172 2hve:C (2.402) BS01 ADP 2.7.4.6 GO:0000287 ... P15531 16944299
    1173 2hxh:C (11.0) BS01 ADP ? GO:0003777 ... P33173 16946706
    1174 2hyd:A (3.0) BS01 ADP 7.6.2.- GO:0005524 ... Q99T13 16943773
    1175 2hyd:A (3.0) BS02 ADP 7.6.2.- GO:0005524 ... Q99T13 16943773
    1176 2hyd:B (3.0) BS01 ADP 7.6.2.- GO:0005524 ... Q99T13 16943773
    1177 2hyd:B (3.0) BS02 ADP 7.6.2.- GO:0005524 ... Q99T13 16943773
    1178 2i1v:B (2.5) BS03 ADP 2.7.1.105
    3.1.3.46
    GO:0003824 ... Q16875 17499765
    1179 2i5b:A (2.8) BS01 ADP 2.7.1.35 GO:0005524 ... P39610 16978644
    1180 2i5b:B (2.8) BS01 ADP 2.7.1.35 GO:0005524 ... P39610 16978644
    1181 2i5b:C (2.8) BS01 ADP 2.7.1.35 GO:0005524 ... P39610 16978644
    1182 2i5b:D (2.8) BS01 ADP 2.7.1.35 GO:0005524 ... P39610 16978644
    1183 2i5b:E (2.8) BS01 ADP 2.7.1.35 GO:0005524 ... P39610 16978644
    1184 2i8c:A (2.46) BS01 ADP 6.3.2.4 GO:0003824 ... Q5HEB7 17015835
    1185 2i8c:B (2.46) BS01 ADP 6.3.2.4 GO:0003824 ... Q5HEB7 17015835
    1186 2ibm:A (3.2) BS01 ADP 7.4.2.8 GO:0005524 ... P28366 16989859
    1187 2ieh:A (2.7) BS01 ADP 3.6.4.4 GO:0003777 ... P52732 17251189
    1188 2ieh:B (2.7) BS01 ADP 3.6.4.4 GO:0003777 ... P52732 17251189
    1189 2if8:A (2.4) BS03 ADP 2.7.1.127
    2.7.1.151
    GO:0000122 ... P07250 17050532
    1190 2ijm:B (2.187) BS01 ADP 2.7.10.2 GO:0004672 ... Q05397 N/A
    1191 2io8:A (2.1) BS04 ADP 3.5.1.78
    6.3.1.8
    GO:0005515 ... P0AES0 17124497
    1192 2io8:B (2.1) BS04 ADP 3.5.1.78
    6.3.1.8
    GO:0005515 ... P0AES0 17124497
    1193 2io9:A (2.2) BS03 ADP 3.5.1.78
    6.3.1.8
    GO:0005515 ... P0AES0 17124497
    1194 2io9:B (2.2) BS03 ADP 3.5.1.78
    6.3.1.8
    GO:0005515 ... P0AES0 17124497
    1195 2ioa:A (2.8) BS04 ADP 3.5.1.78
    6.3.1.8
    GO:0005515 ... P0AES0 17124497
    1196 2ioa:B (2.8) BS04 ADP 3.5.1.78
    6.3.1.8
    GO:0005515 ... P0AES0 17124497
    1197 2iop:A (3.55) BS01 ADP ? GO:0005515 ... P0A6Z3 17055434
    1198 2iop:B (3.55) BS01 ADP ? GO:0005515 ... P0A6Z3 17055434
    1199 2iop:C (3.55) BS01 ADP ? GO:0005515 ... P0A6Z3 17055434
    1200 2iop:D (3.55) BS01 ADP ? GO:0005515 ... P0A6Z3 17055434

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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