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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 12079 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    11601 8uv2:A (3.23) BS01 ADP N/A N/A P55072 39122922
    11602 8uv2:A (3.23) BS02 ADP N/A N/A P55072 39122922
    11603 8uv2:B (3.23) BS01 ADP N/A N/A P55072 39122922
    11604 8uv2:B (3.23) BS02 ADP N/A N/A P55072 39122922
    11605 8uv2:C (3.23) BS01 ADP N/A N/A P55072 39122922
    11606 8uv2:C (3.23) BS02 ADP N/A N/A P55072 39122922
    11607 8uv2:D (3.23) BS01 ADP N/A N/A P55072 39122922
    11608 8uv2:D (3.23) BS02 ADP N/A N/A P55072 39122922
    11609 8uv2:E (3.23) BS01 ADP N/A N/A P55072 39122922
    11610 8uv2:E (3.23) BS02 ADP N/A N/A P55072 39122922
    11611 8uv2:F (3.23) BS01 ADP N/A N/A P55072 39122922
    11612 8uv2:F (3.23) BS02 ADP N/A N/A P55072 39122922
    11613 8uvo:A (3.22) BS01 ADP N/A N/A P55072 39122922
    11614 8uvo:A (3.22) BS02 ADP N/A N/A P55072 39122922
    11615 8uvo:B (3.22) BS01 ADP N/A N/A P55072 39122922
    11616 8uvo:B (3.22) BS02 ADP N/A N/A P55072 39122922
    11617 8uvo:C (3.22) BS01 ADP N/A N/A P55072 39122922
    11618 8uvo:C (3.22) BS02 ADP N/A N/A P55072 39122922
    11619 8uvo:D (3.22) BS01 ADP N/A N/A P55072 39122922
    11620 8uvo:D (3.22) BS02 ADP N/A N/A P55072 39122922
    11621 8uvo:E (3.22) BS01 ADP N/A N/A P55072 39122922
    11622 8uvo:E (3.22) BS02 ADP N/A N/A P55072 39122922
    11623 8uvo:F (3.22) BS01 ADP N/A N/A P55072 39122922
    11624 8uvo:F (3.22) BS02 ADP N/A N/A P55072 39122922
    11625 8uvp:A (3.6) BS01 ADP N/A N/A P55072 39122922
    11626 8uvp:A (3.6) BS02 ADP N/A N/A P55072 39122922
    11627 8uvp:B (3.6) BS01 ADP N/A N/A P55072 39122922
    11628 8uvp:B (3.6) BS02 ADP N/A N/A P55072 39122922
    11629 8uvp:C (3.6) BS01 ADP N/A N/A P55072 39122922
    11630 8uvp:C (3.6) BS02 ADP N/A N/A P55072 39122922
    11631 8uvp:D (3.6) BS01 ADP N/A N/A P55072 39122922
    11632 8uvp:D (3.6) BS02 ADP N/A N/A P55072 39122922
    11633 8uvp:E (3.6) BS01 ADP N/A N/A P55072 39122922
    11634 8uvp:E (3.6) BS02 ADP N/A N/A P55072 39122922
    11635 8uvp:F (3.6) BS01 ADP N/A N/A P55072 39122922
    11636 8uvp:F (3.6) BS02 ADP N/A N/A P55072 39122922
    11637 8uvq:A (3.42) BS01 ADP N/A N/A P55072 39122922
    11638 8uvq:A (3.42) BS02 ADP N/A N/A P55072 39122922
    11639 8uvq:B (3.42) BS01 ADP N/A N/A P55072 39122922
    11640 8uvq:B (3.42) BS02 ADP N/A N/A P55072 39122922
    11641 8uvq:C (3.42) BS01 ADP N/A N/A P55072 39122922
    11642 8uvq:C (3.42) BS02 ADP N/A N/A P55072 39122922
    11643 8uvq:D (3.42) BS01 ADP N/A N/A P55072 39122922
    11644 8uvq:D (3.42) BS02 ADP N/A N/A P55072 39122922
    11645 8uvq:E (3.42) BS01 ADP N/A N/A P55072 39122922
    11646 8uvq:E (3.42) BS02 ADP N/A N/A P55072 39122922
    11647 8uvq:F (3.42) BS01 ADP N/A N/A P55072 39122922
    11648 8uvq:F (3.42) BS02 ADP N/A N/A P55072 39122922
    11649 8uxw:A (2.7) BS01 ADP ? GO:0003779 ... P32390 38448439
    11650 8uxw:H (2.7) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    11651 8uxw:I (2.7) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    11652 8uxw:M (2.7) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    11653 8uxw:N (2.7) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    11654 8uxw:O (2.7) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    11655 8uxw:P (2.7) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    11656 8uxw:Q (2.7) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    11657 8uxw:R (2.7) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    11658 8uxx:A (3.2) BS01 ADP ? GO:0003779 ... P32390 38448439
    11659 8uxx:H (3.2) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    11660 8uxx:I (3.2) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    11661 8uxx:M (3.2) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    11662 8uxx:N (3.2) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    11663 8uxx:O (3.2) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    11664 8uxx:P (3.2) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    11665 8uxx:Q (3.2) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    11666 8uxx:R (3.2) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    11667 8uyd:A (5.3) BS01 ADP ? GO:0000146 ... A0A8W4F696 38387550
    11668 8uyd:B (5.3) BS01 ADP ? GO:0000146 ... A0A8W4F696 38387550
    11669 8uyi:A (3.13) BS01 ADP 2.7.11.1 GO:0004672 ... E0W1I1 38241364
    11670 8uyi:B (3.13) BS01 ADP 2.7.11.1 GO:0004672 ... E0W1I1 38241364
    11671 8uz0:J (2.8) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    11672 8uz0:K (2.8) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    11673 8uz0:L (2.8) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    11674 8uz0:M (2.8) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    11675 8uz0:N (2.8) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    11676 8uz0:O (2.8) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    11677 8uz0:P (2.8) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    11678 8uz0:Q (2.8) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    11679 8uz0:R (2.8) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    11680 8uz1:J (3.6) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    11681 8uz1:K (3.6) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    11682 8uz1:L (3.6) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    11683 8uz1:M (3.6) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    11684 8uz1:N (3.6) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    11685 8uz1:O (3.6) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    11686 8uz1:P (3.6) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    11687 8uz1:Q (3.6) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    11688 8uz1:R (3.6) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    11689 8uz5:A (5.9) BS01 ADP ? GO:0000146 ... A0A8W4F696 38387550
    11690 8uz5:B (5.9) BS01 ADP ? GO:0000146 ... A0A8W4F696 38387550
    11691 8uz6:A (7.1) BS01 ADP ? GO:0000146 ... A0A8W4F696 38387550
    11692 8uz6:B (7.1) BS01 ADP ? GO:0000146 ... A0A8W4F696 38387550
    11693 8uzo:A (2.1) BS01 ADP 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    11694 8uzo:B (2.1) BS01 ADP 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    11695 8uzo:C (2.1) BS01 ADP 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    11696 8uzo:D (2.1) BS01 ADP 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    11697 8uzx:A (5.4) BS01 ADP ? GO:0000146 ... A0A8W4F696 38387550
    11698 8uzx:B (5.4) BS01 ADP ? GO:0000146 ... A0A8W4F696 38387550
    11699 8uzy:A (5.3) BS01 ADP ? GO:0000146 ... A0A8W4F696 38387550
    11700 8uzy:B (5.3) BS01 ADP ? GO:0000146 ... A0A8W4F696 38387550
    11701 8v01:A (5.5) BS01 ADP ? GO:0000146 ... A0A8W4F696 38387550
    11702 8v01:B (5.5) BS01 ADP ? GO:0000146 ... A0A8W4F696 38387550
    11703 8v0i:A (5.8) BS01 ADP ? GO:0000146 ... A0A8W4F696 38387550
    11704 8v0i:B (5.8) BS01 ADP ? GO:0000146 ... A0A8W4F696 38387550
    11705 8v0k:A (5.2) BS01 ADP ? GO:0000146 ... A0A8W4F696 38387550
    11706 8v0k:B (5.2) BS01 ADP ? GO:0000146 ... A0A8W4F696 38387550
    11707 8v0y:A (7.0) BS01 ADP ? GO:0000146 ... A0A8W4F696 38387550
    11708 8v0y:B (7.0) BS01 ADP ? GO:0000146 ... A0A8W4F696 38387550
    11709 8v2o:A (2.45) BS01 ADP 3.6.4.- GO:0005524 ... P63267 38820162
    11710 8v2o:B (2.45) BS01 ADP 3.6.4.- GO:0005524 ... P63267 38820162
    11711 8v2o:C (2.45) BS01 ADP 3.6.4.- GO:0005524 ... P63267 38820162
    11712 8v2o:D (2.45) BS01 ADP 3.6.4.- GO:0005524 ... P63267 38820162
    11713 8v2o:E (2.45) BS01 ADP 3.6.4.- GO:0005524 ... P63267 38820162
    11714 8v2z:A (2.72) BS01 ADP 3.6.4.- GO:0005524 ... P63267 N/A
    11715 8v2z:B (2.72) BS01 ADP 3.6.4.- GO:0005524 ... P63267 N/A
    11716 8v2z:C (2.72) BS01 ADP 3.6.4.- GO:0005524 ... P63267 N/A
    11717 8v2z:D (2.72) BS01 ADP 3.6.4.- GO:0005524 ... P63267 N/A
    11718 8v2z:E (2.72) BS01 ADP 3.6.4.- GO:0005524 ... P63267 N/A
    11719 8v30:A (2.54) BS02 ADP 3.6.4.- GO:0005524 ... P63267 38820162
    11720 8v30:B (2.54) BS03 ADP 3.6.4.- GO:0005524 ... P63267 38820162
    11721 8v30:C (2.54) BS03 ADP 3.6.4.- GO:0005524 ... P63267 38820162
    11722 8v30:D (2.54) BS03 ADP 3.6.4.- GO:0005524 ... P63267 38820162
    11723 8v30:E (2.54) BS03 ADP 3.6.4.- GO:0005524 ... P63267 38820162
    11724 8v4y:W (2.8) BS03 ADP 3.6.4.- GO:0000183 ... O60264 38472177
    11725 8v6v:W (2.8) BS03 ADP 3.6.4.- GO:0000183 ... O60264 38472177
    11726 8v6v:X (2.8) BS03 ADP 3.6.4.- GO:0000183 ... O60264 38472177
    11727 8v7l:W (2.9) BS03 ADP 3.6.4.- GO:0000183 ... O60264 38472177
    11728 8v87:3 (2.66) BS02 ADP 3.6.4.13 GO:0000463 ... Q12389 38632236
    11729 8val:B (3.7) BS02 ADP 2.7.7.7 GO:0003677 ... P06710 38490435
    11730 8val:C (3.7) BS03 ADP 2.7.7.7 GO:0003677 ... P06710 38490435
    11731 8val:D (3.7) BS04 ADP 2.7.7.7 GO:0003677 ... P06710 38490435
    11732 8vam:B (3.9) BS02 ADP 2.7.7.7 GO:0003677 ... P06710 38490435
    11733 8vam:C (3.9) BS01 ADP 2.7.7.7 GO:0003677 ... P06710 38490435
    11734 8vam:D (3.9) BS02 ADP 2.7.7.7 GO:0003677 ... P06710 38490435
    11735 8vap:B (3.0) BS01 ADP 2.7.7.7 GO:0003677 ... P06710 38490435
    11736 8vap:C (3.0) BS01 ADP 2.7.7.7 GO:0003677 ... P06710 38490435
    11737 8vap:D (3.0) BS02 ADP 2.7.7.7 GO:0003677 ... P06710 38490435
    11738 8vaq:B (3.8) BS02 ADP 2.7.7.7 GO:0003677 ... P06710 38490435
    11739 8vaq:C (3.8) BS02 ADP 2.7.7.7 GO:0003677 ... P06710 38490435
    11740 8vaq:D (3.8) BS02 ADP 2.7.7.7 GO:0003677 ... P06710 38490435
    11741 8var:B (3.9) BS03 ADP 2.7.7.7 GO:0003677 ... P06710 38490435
    11742 8var:C (3.9) BS03 ADP 2.7.7.7 GO:0003677 ... P06710 38490435
    11743 8var:D (3.9) BS03 ADP 2.7.7.7 GO:0003677 ... P06710 38490435
    11744 8vas:B (3.8) BS03 ADP 2.7.7.7 GO:0003677 ... P06710 38490435
    11745 8vas:C (3.8) BS03 ADP 2.7.7.7 GO:0003677 ... P06710 38490435
    11746 8vas:D (3.8) BS02 ADP 2.7.7.7 GO:0003677 ... P06710 38490435
    11747 8vat:B (3.2) BS03 ADP 2.7.7.7 GO:0003677 ... P06710 38490435
    11748 8vat:C (3.2) BS03 ADP 2.7.7.7 GO:0003677 ... P06710 38490435
    11749 8vat:D (3.2) BS02 ADP 2.7.7.7 GO:0003677 ... P06710 38490435
    11750 8vcj:A (3.32) BS01 ADP N/A GO:0003677 ... P05846 38834067
    11751 8vcj:B (3.32) BS02 ADP N/A GO:0003677 ... P05846 38834067
    11752 8vcj:D (3.32) BS01 ADP N/A GO:0003677 ... P05846 38834067
    11753 8vcj:E (3.32) BS01 ADP N/A GO:0003677 ... P05846 38834067
    11754 8vcj:F (3.32) BS02 ADP N/A GO:0003677 ... P05846 38834067
    11755 8vct:A (3.83) BS01 ADP N/A GO:0003677 ... P05846 38834067
    11756 8vct:B (3.83) BS03 ADP N/A GO:0003677 ... P05846 38834067
    11757 8vct:E (3.83) BS01 ADP N/A GO:0003677 ... P05846 38834067
    11758 8vct:F (3.83) BS01 ADP N/A GO:0003677 ... P05846 38834067
    11759 8vme:A (2.3) BS03 ADP N/A N/A Q9WV60 39226374
    11760 8vmf:A (2.5) BS05 ADP N/A N/A Q9WV60 39226374
    11761 8vmg:A (2.45) BS01 ADP N/A N/A Q9WV60 39226374
    11762 8vov:A (3.6) BS01 ADP N/A GO:0000502 ... P55072 38833472
    11763 8vov:B (3.6) BS01 ADP N/A GO:0000502 ... P55072 38833472
    11764 8vov:C (3.6) BS01 ADP N/A GO:0000502 ... P55072 38833472
    11765 8vov:D (3.6) BS01 ADP N/A GO:0000502 ... P55072 38833472
    11766 8vov:E (3.6) BS01 ADP N/A GO:0000502 ... P55072 38833472
    11767 8vov:F (3.6) BS01 ADP N/A GO:0000502 ... P55072 38833472
    11768 8vsu:B (2.86) BS01 ADP N/A GO:0004672 ... Q7RTN6 38944401
    11769 8vw1:A (1.7) BS01 ADP 6.3.2.9 GO:0005515 ... P14900 N/A
    11770 8w2g:A (3.0) BS02 ADP N/A N/A P17858 39183237
    11771 8w2g:A (3.0) BS03 ADP N/A N/A P17858 39183237
    11772 8w2g:A (3.0) BS04 ADP N/A N/A P17858 39183237
    11773 8w2g:B (3.0) BS04 ADP N/A N/A P17858 39183237
    11774 8w2g:B (3.0) BS05 ADP N/A N/A P17858 39183237
    11775 8w2g:B (3.0) BS06 ADP N/A N/A P17858 39183237
    11776 8w2g:C (3.0) BS03 ADP N/A N/A P17858 39183237
    11777 8w2g:C (3.0) BS04 ADP N/A N/A P17858 39183237
    11778 8w2g:C (3.0) BS05 ADP N/A N/A P17858 39183237
    11779 8w2g:D (3.0) BS02 ADP N/A N/A P17858 39183237
    11780 8w2g:D (3.0) BS03 ADP N/A N/A P17858 39183237
    11781 8w2g:D (3.0) BS04 ADP N/A N/A P17858 39183237
    11782 8w41:A (3.54) BS01 ADP ? GO:0000146 ... Q9UM54 38331992
    11783 8w7m:2 (4.12) BS01 ADP 3.6.4.12 GO:0000727 ... P29469 37730685
    11784 8w7m:3 (4.12) BS02 ADP 3.6.4.12 GO:0000727 ... P24279 37730685
    11785 8w7m:5 (4.12) BS01 ADP 3.6.4.12 GO:0000727 ... P29496 37730685
    11786 8w7m:6 (4.12) BS01 ADP 3.6.4.12 GO:0000727 ... P53091 37730685
    11787 8wh6:A (3.27) BS01 ADP N/A N/A Q5IXS3 39167653
    11788 8wh6:B (3.27) BS01 ADP N/A N/A Q5IXS3 39167653
    11789 8wh6:C (3.27) BS02 ADP N/A N/A Q5IXS3 39167653
    11790 8wh6:D (3.27) BS01 ADP N/A N/A Q5IXS3 39167653
    11791 8wh8:K (3.6) BS03 ADP 3.6.4.12 GO:0000786 ... Q9XFH4 38413824
    11792 8wh9:K (3.31) BS03 ADP 3.6.4.12 GO:0000786 ... Q9XFH4 38413824
    11793 8wha:K (4.05) BS03 ADP 3.6.4.12 GO:0000786 ... Q9XFH4 38413824
    11794 8wha:L (4.05) BS04 ADP 3.6.4.12 GO:0000786 ... Q9XFH4 38413824
    11795 8wm7:C (3.53) BS01 ADP 7.3.2.4 GO:0005524 ... Q8YZ76 38457518
    11796 8wm7:D (3.53) BS01 ADP ? GO:0005524 ... Q8YZ75 38457518
    11797 8wm7:E (3.53) BS01 ADP ? GO:0000166 ... Q9L422 38457518
    11798 8wm7:E (3.53) BS02 ADP ? GO:0000166 ... Q9L422 38457518
    11799 8wm7:F (3.53) BS01 ADP ? GO:0000166 ... Q9L422 38457518
    11800 8wm7:F (3.53) BS02 ADP ? GO:0000166 ... Q9L422 38457518
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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