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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 12079 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    11401 8sho:q (3.0) BS01 ADP ? GO:0002199 ... P50990 37852256
    11402 8sho:z (3.0) BS01 ADP ? GO:0003723 ... P40227 37852256
    11403 8shp:A (3.0) BS01 ADP ? GO:0000242 ... P17987 37852256
    11404 8shp:B (3.0) BS01 ADP ? GO:0002199 ... P78371 37852256
    11405 8shp:D (3.0) BS01 ADP ? GO:0002199 ... P50991 37852256
    11406 8shp:E (3.0) BS01 ADP ? GO:0003730 ... P48643 37852256
    11407 8shp:G (3.0) BS01 ADP ? GO:0002199 ... P49368 37852256
    11408 8shp:H (3.0) BS01 ADP ? GO:0005515 ... Q99832 37852256
    11409 8shp:Q (3.0) BS01 ADP ? GO:0002199 ... P50990 37852256
    11410 8shp:Z (3.0) BS01 ADP ? GO:0003723 ... P40227 37852256
    11411 8shp:a (3.0) BS01 ADP ? GO:0000242 ... P17987 37852256
    11412 8shp:b (3.0) BS01 ADP ? GO:0002199 ... P78371 37852256
    11413 8shp:d (3.0) BS01 ADP ? GO:0002199 ... P50991 37852256
    11414 8shp:e (3.0) BS01 ADP ? GO:0003730 ... P48643 37852256
    11415 8shp:g (3.0) BS01 ADP ? GO:0002199 ... P49368 37852256
    11416 8shp:h (3.0) BS01 ADP ? GO:0005515 ... Q99832 37852256
    11417 8shp:q (3.0) BS01 ADP ? GO:0002199 ... P50990 37852256
    11418 8shp:z (3.0) BS01 ADP ? GO:0003723 ... P40227 37852256
    11419 8shq:A (2.9) BS01 ADP ? GO:0000242 ... P17987 37852256
    11420 8shq:B (2.9) BS01 ADP ? GO:0002199 ... P78371 37852256
    11421 8shq:D (2.9) BS01 ADP ? GO:0002199 ... P50991 37852256
    11422 8shq:E (2.9) BS01 ADP ? GO:0003730 ... P48643 37852256
    11423 8shq:G (2.9) BS01 ADP ? GO:0002199 ... P49368 37852256
    11424 8shq:H (2.9) BS01 ADP ? GO:0005515 ... Q99832 37852256
    11425 8shq:Q (2.9) BS01 ADP ? GO:0002199 ... P50990 37852256
    11426 8shq:Z (2.9) BS01 ADP ? GO:0003723 ... P40227 37852256
    11427 8shq:a (2.9) BS01 ADP ? GO:0000242 ... P17987 37852256
    11428 8shq:b (2.9) BS01 ADP ? GO:0002199 ... P78371 37852256
    11429 8shq:d (2.9) BS01 ADP ? GO:0002199 ... P50991 37852256
    11430 8shq:e (2.9) BS01 ADP ? GO:0003730 ... P48643 37852256
    11431 8shq:g (2.9) BS01 ADP ? GO:0002199 ... P49368 37852256
    11432 8shq:h (2.9) BS01 ADP ? GO:0005515 ... Q99832 37852256
    11433 8shq:q (2.9) BS01 ADP ? GO:0002199 ... P50990 37852256
    11434 8shq:z (2.9) BS01 ADP ? GO:0003723 ... P40227 37852256
    11435 8sht:A (3.0) BS01 ADP ? GO:0000242 ... P17987 37852256
    11436 8sht:B (3.0) BS01 ADP ? GO:0002199 ... P78371 37852256
    11437 8sht:D (3.0) BS01 ADP ? GO:0002199 ... P50991 37852256
    11438 8sht:E (3.0) BS01 ADP ? GO:0003730 ... P48643 37852256
    11439 8sht:G (3.0) BS01 ADP ? GO:0002199 ... P49368 37852256
    11440 8sht:H (3.0) BS01 ADP ? GO:0005515 ... Q99832 37852256
    11441 8sht:Q (3.0) BS01 ADP ? GO:0002199 ... P50990 37852256
    11442 8sht:Z (3.0) BS01 ADP ? GO:0003723 ... P40227 37852256
    11443 8sht:a (3.0) BS01 ADP ? GO:0000242 ... P17987 37852256
    11444 8sht:b (3.0) BS01 ADP ? GO:0002199 ... P78371 37852256
    11445 8sht:d (3.0) BS01 ADP ? GO:0002199 ... P50991 37852256
    11446 8sht:e (3.0) BS01 ADP ? GO:0003730 ... P48643 37852256
    11447 8sht:g (3.0) BS01 ADP ? GO:0002199 ... P49368 37852256
    11448 8sht:h (3.0) BS01 ADP ? GO:0005515 ... Q99832 37852256
    11449 8sht:q (3.0) BS01 ADP ? GO:0002199 ... P50990 37852256
    11450 8sht:z (3.0) BS01 ADP ? GO:0003723 ... P40227 37852256
    11451 8sob:A (3.9) BS01 ADP 2.7.11.1
    2.7.1.137
    2.7.1.153
    2.7.1.154    		 GO:0001525 ... O02697 38565696
    11452 8soc:A (3.5) BS01 ADP 2.7.11.1
    2.7.1.137
    2.7.1.153
    2.7.1.154    		 GO:0001525 ... O02697 38565696
    11453 8sod:A (3.4) BS01 ADP 2.7.11.1
    2.7.1.137
    2.7.1.153
    2.7.1.154    		 GO:0001525 ... O02697 38565696
    11454 8soe:A (3.6) BS01 ADP 2.7.11.1
    2.7.1.137
    2.7.1.153
    2.7.1.154    		 GO:0001525 ... O02697 38565696
    11455 8sor:A (3.96) BS01 ADP 2.7.11.1 GO:0004672 ... Q99570 N/A
    11456 8spg:A (2.1) BS01 ADP N/A N/A P60240 N/A
    11457 8spw:E (3.5) BS01 ADP 7.1.2.2 GO:0005515 ... P07677 38237595
    11458 8spx:F (2.95) BS01 ADP 7.1.2.2 GO:0005515 ... P07677 38237595
    11459 8ssw:A (2.4) BS03 ADP 3.6.4.13 N/A O00571 N/A
    11460 8ssw:B (2.4) BS03 ADP 3.6.4.13 N/A O00571 N/A
    11461 8su9:M (2.83) BS01 ADP N/A N/A N/A 38096827
    11462 8su9:N (2.83) BS01 ADP N/A N/A N/A 38096827
    11463 8su9:O (2.83) BS01 ADP N/A N/A N/A 38096827
    11464 8su9:P (2.83) BS01 ADP N/A N/A N/A 38096827
    11465 8su9:Q (2.83) BS01 ADP N/A N/A N/A 38096827
    11466 8sub:M (2.89) BS01 ADP N/A N/A N/A 38096827
    11467 8sub:N (2.89) BS01 ADP N/A N/A N/A 38096827
    11468 8sub:O (2.89) BS01 ADP N/A N/A N/A 38096827
    11469 8sub:P (2.89) BS01 ADP N/A N/A N/A 38096827
    11470 8sub:Q (2.89) BS01 ADP N/A N/A N/A 38096827
    11471 8suw:M (3.15) BS01 ADP N/A N/A N/A 38096827
    11472 8suw:N (3.15) BS01 ADP N/A N/A N/A 38096827
    11473 8suw:O (3.15) BS01 ADP N/A N/A N/A 38096827
    11474 8szp:A (2.62) BS01 ADP 3.6.4.13 GO:0003676 ... Q08211 37860960
    11475 8szp:B (2.62) BS01 ADP 3.6.4.13 GO:0003676 ... Q08211 37860960
    11476 8szq:A (2.711) BS01 ADP 3.6.4.13 GO:0003676 ... M3WPI7 37860960
    11477 8szr:A (2.97) BS01 ADP 3.6.4.13 GO:0003676 ... A0A8I3RTG4 37860960
    11478 8t14:A (3.18) BS01 ADP ? GO:0005524 ... Q9CZP5 38821922
    11479 8t14:B (3.18) BS01 ADP ? GO:0005524 ... Q9CZP5 38821922
    11480 8t14:C (3.18) BS01 ADP ? GO:0005524 ... Q9CZP5 38821922
    11481 8t14:D (3.18) BS01 ADP ? GO:0005524 ... Q9CZP5 38821922
    11482 8t14:E (3.18) BS01 ADP ? GO:0005524 ... Q9CZP5 38821922
    11483 8t14:F (3.18) BS01 ADP ? GO:0005524 ... Q9CZP5 38821922
    11484 8t14:G (3.18) BS01 ADP ? GO:0005524 ... Q9CZP5 38821922
    11485 8t5s:A (2.9) BS04 ADP 3.6.4.13 GO:0003676 ... G5EDI8 38747717
    11486 8t7u:A (3.74) BS01 ADP ? GO:0005524 ... Q9CZP5 38821922
    11487 8t7u:B (3.74) BS01 ADP ? GO:0005524 ... Q9CZP5 38821922
    11488 8t7u:C (3.74) BS01 ADP ? GO:0005524 ... Q9CZP5 38821922
    11489 8t7u:D (3.74) BS01 ADP ? GO:0005524 ... Q9CZP5 38821922
    11490 8t7u:E (3.74) BS01 ADP ? GO:0005524 ... Q9CZP5 38821922
    11491 8t7u:F (3.74) BS01 ADP ? GO:0005524 ... Q9CZP5 38821922
    11492 8t7u:G (3.74) BS01 ADP ? GO:0005524 ... Q9CZP5 38821922
    11493 8t8u:A (2.01) BS01 ADP ? GO:0000828 ... A0A3G4ZNY6 38216735
    11494 8t8v:A (1.96) BS01 ADP ? GO:0000828 ... A0A3G4ZNY6 38216735
    11495 8t8y:A (2.5) BS01 ADP ? GO:0000828 ... A0A3G4ZNY6 38216735
    11496 8t8z:A (2.6) BS01 ADP ? GO:0000828 ... A0A3G4ZNY6 38216735
    11497 8t90:A (2.3) BS01 ADP ? GO:0000828 ... A0A3G4ZNY6 38216735
    11498 8t91:A (2.56) BS01 ADP ? GO:0000828 ... A0A3G4ZNY6 38216735
    11499 8t92:A (2.3) BS01 ADP ? GO:0000828 ... A0A3G4ZNY6 38216735
    11500 8t93:A (1.95) BS01 ADP ? GO:0000828 ... A0A3G4ZNY6 38216735
    11501 8t95:A (2.61) BS01 ADP ? GO:0000828 ... A0A3G4ZNY6 38216735
    11502 8t96:A (2.36) BS01 ADP ? GO:0000828 ... A0A3G4ZNY6 38216735
    11503 8t97:A (2.46) BS01 ADP ? GO:0000828 ... A0A3G4ZNY6 38216735
    11504 8tbx:A (2.71) BS01 ADP 3.6.4.13 GO:0003676 ... Q92499 N/A
    11505 8tfk:A (2.66) BS05 ADP 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    11506 8tfk:B (2.66) BS05 ADP 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    11507 8tfk:C (2.66) BS05 ADP 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    11508 8tfk:D (2.66) BS05 ADP 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    11509 8tfk:E (2.66) BS02 ADP 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    11510 8tfk:F (2.66) BS02 ADP 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    11511 8tfk:G (2.66) BS02 ADP 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    11512 8tfk:H (2.66) BS02 ADP 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    11513 8tfk:I (2.66) BS02 ADP 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    11514 8tfk:J (2.66) BS02 ADP 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    11515 8tfk:K (2.66) BS02 ADP 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    11516 8tfk:L (2.66) BS02 ADP 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    11517 8thb:E (3.2) BS01 ADP ? GO:0000077 ... P38251 38427736
    11518 8thc:E (3.67) BS01 ADP ? GO:0000077 ... P38251 38427736
    11519 8thd:E (3.25) BS01 ADP ? GO:0000077 ... P38251 38427736
    11520 8thx:A (3.98) BS01 ADP N/A GO:0000011 ... P60009 N/A
    11521 8thx:B (3.98) BS01 ADP N/A GO:0000011 ... P60009 N/A
    11522 8thx:C (3.98) BS01 ADP N/A GO:0000011 ... P60009 N/A
    11523 8thx:D (3.98) BS01 ADP N/A GO:0000011 ... P60009 N/A
    11524 8thx:E (3.98) BS01 ADP N/A GO:0000011 ... P60009 N/A
    11525 8thy:A (3.84) BS01 ADP N/A GO:0000011 ... P60009 N/A
    11526 8thy:B (3.84) BS01 ADP N/A GO:0000011 ... P60009 N/A
    11527 8thy:C (3.84) BS01 ADP N/A GO:0000011 ... P60009 N/A
    11528 8thy:D (3.84) BS01 ADP N/A GO:0000011 ... P60009 N/A
    11529 8thy:E (3.84) BS01 ADP N/A GO:0000011 ... P60009 N/A
    11530 8ti3:A (4.43) BS01 ADP N/A GO:0000011 ... P60009 N/A
    11531 8ti3:B (4.43) BS01 ADP N/A GO:0000011 ... P60009 N/A
    11532 8ti3:C (4.43) BS01 ADP N/A GO:0000011 ... P60009 N/A
    11533 8ti3:D (4.43) BS01 ADP N/A GO:0000011 ... P60009 N/A
    11534 8ti3:E (4.43) BS01 ADP N/A GO:0000011 ... P60009 N/A
    11535 8trm:A (2.5) BS01 ADP 3.6.4.- GO:0005524 ... P53476 38418447
    11536 8trm:B (2.5) BS01 ADP 3.6.4.- GO:0005524 ... P53476 38418447
    11537 8trm:C (2.5) BS01 ADP 3.6.4.- GO:0005524 ... P53476 38418447
    11538 8trn:A (3.0) BS01 ADP 3.6.4.- GO:0005524 ... P53476 38418447
    11539 8trn:B (3.0) BS02 ADP 3.6.4.- GO:0005524 ... P53476 38418447
    11540 8trn:C (3.0) BS01 ADP 3.6.4.- GO:0005524 ... P53476 38418447
    11541 8tsi:A (4.4) BS01 ADP ? GO:0005524 ... A0A2S5T4B3 38570679
    11542 8tsi:A (4.4) BS04 ADP ? GO:0005524 ... A0A2S5T4B3 38570679
    11543 8tsi:B (4.4) BS01 ADP ? GO:0005524 ... A0A2S5T4B3 38570679
    11544 8tsi:B (4.4) BS04 ADP ? GO:0005524 ... A0A2S5T4B3 38570679
    11545 8tw7:5 (3.8) BS01 ADP N/A N/A P38251 N/A
    11546 8tw8:5 (3.5) BS02 ADP N/A N/A P38251 N/A
    11547 8twa:5 (4.1) BS02 ADP N/A N/A P38251 N/A
    11548 8twb:5 (3.2) BS03 ADP N/A N/A P38251 N/A
    11549 8tzj:A (3.51) BS01 ADP ? GO:0005524 ... Q9KVJ5 38070498
    11550 8tzj:B (3.51) BS01 ADP ? GO:0005524 ... Q9KVJ5 38070498
    11551 8tzk:A (3.55) BS01 ADP ? GO:0005524 ... Q9KVJ5 38070498
    11552 8tzk:B (3.55) BS01 ADP ? GO:0005524 ... Q9KVJ5 38070498
    11553 8tzl:A (3.55) BS01 ADP ? GO:0005524 ... A0A085R4L6 38070498
    11554 8tzl:B (3.55) BS01 ADP ? GO:0005524 ... A0A085R4L6 38070498
    11555 8u0k:A (2.5) BS01 ADP 2.7.4.26 GO:0005524 ... W0I5G2 38333996
    11556 8u0k:B (2.5) BS01 ADP 2.7.4.26 GO:0005524 ... W0I5G2 38333996
    11557 8u0l:A (2.8) BS01 ADP 2.7.4.26 GO:0005524 ... W0I5G2 38333996
    11558 8u0l:B (2.8) BS01 ADP 2.7.4.26 GO:0005524 ... W0I5G2 38333996
    11559 8u0m:A (2.54) BS01 ADP 2.7.4.26 GO:0005524 ... W0I5G2 38333996
    11560 8u0n:A (2.5) BS01 ADP 2.7.4.26 GO:0005524 ... W0I5G2 38333996
    11561 8u0n:B (2.5) BS02 ADP 2.7.4.26 GO:0005524 ... W0I5G2 38333996
    11562 8u1h:D (3.0) BS01 ADP N/A N/A A0A0M4U1P9 N/A
    11563 8u94:A (1.4) BS01 ADP 2.7.1.24 GO:0004140 ... A0A0H3FR62 N/A
    11564 8uaf:M (3.18) BS01 ADP N/A N/A N/A 38096827
    11565 8uaf:N (3.18) BS01 ADP N/A N/A N/A 38096827
    11566 8uaf:O (3.18) BS01 ADP N/A N/A N/A 38096827
    11567 8uaf:P (3.18) BS02 ADP N/A N/A N/A 38096827
    11568 8uaf:Q (3.18) BS01 ADP N/A N/A N/A 38096827
    11569 8uee:F (3.2) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38518780
    11570 8uee:H (3.2) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38518780
    11571 8uee:I (3.2) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38518780
    11572 8uee:J (3.2) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38518780
    11573 8uee:K (3.2) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38518780
    11574 8uee:L (3.2) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38518780
    11575 8uee:M (3.2) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38518780
    11576 8uh7:E (2.628) BS02 ADP 3.6.4.- GO:0003677 ... P04526 38177685
    11577 8ui7:D (4.2) BS01 ADP ? GO:0003689 ... P35249 38871854
    11578 8ui7:E (4.2) BS01 ADP ? GO:0000731 ... P40938 38871854
    11579 8ui8:D (3.1) BS01 ADP ? GO:0003689 ... P35249 38871854
    11580 8ui8:E (3.1) BS01 ADP ? GO:0000731 ... P40938 38871854
    11581 8ui9:E (3.5) BS01 ADP ? GO:0000731 ... P40938 38871854
    11582 8uii:E (3.04) BS01 ADP ? GO:0000731 ... P40938 38871854
    11583 8uk9:B (3.1) BS03 ADP 3.6.4.- GO:0003677 ... P04526 38177685
    11584 8uk9:C (3.1) BS04 ADP 3.6.4.- GO:0003677 ... P04526 38177685
    11585 8uk9:D (3.1) BS04 ADP 3.6.4.- GO:0003677 ... P04526 38177685
    11586 8uk9:E (3.1) BS02 ADP 3.6.4.- GO:0003677 ... P04526 38177685
    11587 8uk9:K (3.1) BS04 ADP 3.6.4.- GO:0003677 ... P04526 38177685
    11588 8uk9:L (3.1) BS04 ADP 3.6.4.- GO:0003677 ... P04526 38177685
    11589 8uk9:M (3.1) BS04 ADP 3.6.4.- GO:0003677 ... P04526 38177685
    11590 8uk9:N (3.1) BS02 ADP 3.6.4.- GO:0003677 ... P04526 38177685
    11591 8umt:E (3.33) BS01 ADP ? GO:0000731 ... P40938 38669181
    11592 8umu:E (3.16) BS01 ADP ? GO:0000731 ... P40938 38669181
    11593 8umv:E (2.75) BS03 ADP ? GO:0000731 ... P40938 38669181
    11594 8umw:E (2.93) BS03 ADP ? GO:0000731 ... P40938 38669181
    11595 8umy:E (2.83) BS03 ADP ? GO:0000731 ... P40938 38669181
    11596 8un0:E (3.0) BS03 ADP ? GO:0000731 ... P40938 38669181
    11597 8unf:E (3.15) BS02 ADP 3.6.4.- GO:0003677 ... P04526 38177685
    11598 8unj:E (3.35) BS01 ADP ? GO:0000731 ... P40938 38669181
    11599 8utr:K (3.3) BS01 ADP ? N/A Q12756 38956021
    11600 8utv:K (3.0) BS01 ADP ? N/A Q12756 38956021
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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