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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 12079 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    10601 8jxu:A (3.55) BS01 ADP 7.6.2.-
    7.6.2.2
    7.6.2.3
    GO:0005515 ... Q92887 38316776
    10602 8k1p:B (3.4) BS01 ADP N/A GO:0005524 ... O86311 N/A
    10603 8k1s:A (2.83) BS01 ADP ? GO:0005515 ... O32080 38719864
    10604 8k1s:B (2.83) BS01 ADP ? GO:0005515 ... O32080 38719864
    10605 8k1s:C (2.83) BS01 ADP ? GO:0005515 ... O32080 38719864
    10606 8k1s:D (2.83) BS01 ADP ? GO:0005515 ... O32080 38719864
    10607 8k1s:E (2.83) BS01 ADP ? GO:0005515 ... O32080 38719864
    10608 8k1s:F (2.83) BS01 ADP ? GO:0005515 ... O32080 38719864
    10609 8k1s:G (2.83) BS01 ADP ? GO:0005515 ... O32080 38719864
    10610 8k1s:H (2.83) BS01 ADP ? GO:0005515 ... O32080 38719864
    10611 8k3y:B (4.42) BS01 ADP 3.4.21.53 GO:0004176 ... A0A059VAZ3 37957149
    10612 8k3y:C (4.42) BS01 ADP 3.4.21.53 GO:0004176 ... A0A059VAZ3 37957149
    10613 8k3y:D (4.42) BS01 ADP 3.4.21.53 GO:0004176 ... A0A059VAZ3 37957149
    10614 8k3y:E (4.42) BS01 ADP 3.4.21.53 GO:0004176 ... A0A059VAZ3 37957149
    10615 8k7c:A (3.9) BS01 ADP 7.6.2.5 GO:0005524 ... Q9NP58 37735522
    10616 8k7c:A (3.9) BS03 ADP 7.6.2.5 GO:0005524 ... Q9NP58 37735522
    10617 8k7c:B (3.9) BS01 ADP 7.6.2.5 GO:0005524 ... Q9NP58 37735522
    10618 8k7c:B (3.9) BS02 ADP 7.6.2.5 GO:0005524 ... Q9NP58 37735522
    10619 8kcb:K (3.17) BS04 ADP N/A GO:0000786 ... Q9XFH4 38870940
    10620 8kcc:K (3.1) BS03 ADP N/A GO:0000786 ... Q9XFH4 38870940
    10621 8kg2:A (3.1) BS01 ADP 3.6.4.6 N/A P55072 N/A
    10622 8kg2:B (3.1) BS01 ADP 3.6.4.6 N/A P55072 N/A
    10623 8kg2:C (3.1) BS01 ADP 3.6.4.6 N/A P55072 N/A
    10624 8kg2:D (3.1) BS01 ADP 3.6.4.6 N/A P55072 N/A
    10625 8kg2:E (3.1) BS01 ADP 3.6.4.6 N/A P55072 N/A
    10626 8kg2:F (3.1) BS01 ADP 3.6.4.6 N/A P55072 N/A
    10627 8kg2:G (3.1) BS01 ADP 3.6.4.6 N/A P55072 N/A
    10628 8kg2:H (3.1) BS01 ADP 3.6.4.6 N/A P55072 N/A
    10629 8kg2:I (3.1) BS01 ADP 3.6.4.6 N/A P55072 N/A
    10630 8kg2:J (3.1) BS01 ADP 3.6.4.6 N/A P55072 N/A
    10631 8kg2:K (3.1) BS01 ADP 3.6.4.6 N/A P55072 N/A
    10632 8kg2:L (3.1) BS01 ADP 3.6.4.6 N/A P55072 N/A
    10633 8kg6:2 (3.07) BS03 ADP 3.6.4.12 GO:0000727 ... P29469 37730685
    10634 8kg6:3 (3.07) BS02 ADP 3.6.4.12 GO:0000727 ... P24279 37730685
    10635 8kg6:5 (3.07) BS02 ADP 3.6.4.12 GO:0000727 ... P29496 37730685
    10636 8kg6:6 (3.07) BS03 ADP 3.6.4.12 GO:0000727 ... P53091 37730685
    10637 8kg8:2 (4.23) BS03 ADP 3.6.4.12 GO:0000727 ... P29469 37730685
    10638 8kg8:3 (4.23) BS02 ADP 3.6.4.12 GO:0000727 ... P24279 37730685
    10639 8kg8:5 (4.23) BS02 ADP 3.6.4.12 GO:0000727 ... P29496 37730685
    10640 8kg8:6 (4.23) BS02 ADP 3.6.4.12 GO:0000727 ... P53091 37730685
    10641 8kg9:2 (4.52) BS02 ADP 3.6.4.12 GO:0000727 ... P29469 37730685
    10642 8kg9:3 (4.52) BS03 ADP 3.6.4.12 GO:0000727 ... P24279 37730685
    10643 8kg9:6 (4.52) BS02 ADP 3.6.4.12 GO:0000727 ... P53091 37730685
    10644 8kgt:A (2.3) BS01 ADP 5.6.2.2 N/A A0A2X0THW2 38816407
    10645 8ki3:D (2.89) BS01 ADP 7.1.2.2 GO:0001525 ... P06576 38961288
    10646 8ki3:F (2.89) BS01 ADP 7.1.2.2 GO:0001525 ... P06576 38961288
    10647 8of5:A (1.97) BS01 ADP 2.7.11.1 GO:0004672 ... O14965 N/A
    10648 8oi6:A (3.59) BS02 ADP 3.6.4.- GO:0005515 ... P60712 37749275
    10649 8oi6:B (3.59) BS03 ADP 3.6.4.- GO:0005515 ... P60712 37749275
    10650 8oi6:C (3.59) BS03 ADP 3.6.4.- GO:0005515 ... P60712 37749275
    10651 8oi6:D (3.59) BS02 ADP 3.6.4.- GO:0005515 ... P60712 37749275
    10652 8oi8:A (2.28) BS01 ADP 3.6.4.- GO:0000079 ... P60709 37749275
    10653 8oi8:B (2.28) BS01 ADP 3.6.4.- GO:0000079 ... P60709 37749275
    10654 8oi8:C (2.28) BS01 ADP 3.6.4.- GO:0000079 ... P60709 37749275
    10655 8oi8:D (2.28) BS01 ADP 3.6.4.- GO:0000079 ... P60709 37749275
    10656 8oi8:E (2.28) BS01 ADP 3.6.4.- GO:0000079 ... P60709 37749275
    10657 8oid:A (2.3) BS01 ADP 3.6.4.- GO:0000079 ... P60709 37749275
    10658 8oid:B (2.3) BS01 ADP 3.6.4.- GO:0000079 ... P60709 37749275
    10659 8oid:C (2.3) BS01 ADP 3.6.4.- GO:0000079 ... P60709 37749275
    10660 8oid:D (2.3) BS01 ADP 3.6.4.- GO:0000079 ... P60709 37749275
    10661 8oid:E (2.3) BS01 ADP 3.6.4.- GO:0000079 ... P60709 37749275
    10662 8oie:D (2.35) BS01 ADP 1.18.6.1 GO:0005524 ... D5ANJ6 38062208
    10663 8oie:D (2.35) BS04 ADP 1.18.6.1 GO:0005524 ... D5ANJ6 38062208
    10664 8oie:E (2.35) BS01 ADP 1.18.6.1 GO:0005524 ... D5ANJ6 38062208
    10665 8oie:E (2.35) BS03 ADP 1.18.6.1 GO:0005524 ... D5ANJ6 38062208
    10666 8oie:I (2.35) BS01 ADP 1.18.6.1 GO:0005524 ... D5ANJ6 38062208
    10667 8oie:I (2.35) BS04 ADP 1.18.6.1 GO:0005524 ... D5ANJ6 38062208
    10668 8oie:J (2.35) BS01 ADP 1.18.6.1 GO:0005524 ... D5ANJ6 38062208
    10669 8oie:J (2.35) BS03 ADP 1.18.6.1 GO:0005524 ... D5ANJ6 38062208
    10670 8ojl:A (2.88) BS01 ADP 3.4.21.53 GO:0004176 ... P36776 38688959
    10671 8ojl:B (2.88) BS01 ADP 3.4.21.53 GO:0004176 ... P36776 38688959
    10672 8ojl:C (2.88) BS01 ADP 3.4.21.53 GO:0004176 ... P36776 38688959
    10673 8ojl:D (2.88) BS01 ADP 3.4.21.53 GO:0004176 ... P36776 38688959
    10674 8ojl:E (2.88) BS01 ADP 3.4.21.53 GO:0004176 ... P36776 38688959
    10675 8ojl:F (2.88) BS01 ADP 3.4.21.53 GO:0004176 ... P36776 38688959
    10676 8oka:A (3.89) BS01 ADP 3.4.21.53 GO:0004176 ... P36776 38688959
    10677 8oka:B (3.89) BS01 ADP 3.4.21.53 GO:0004176 ... P36776 38688959
    10678 8oka:C (3.89) BS01 ADP 3.4.21.53 GO:0004176 ... P36776 38688959
    10679 8oka:D (3.89) BS01 ADP 3.4.21.53 GO:0004176 ... P36776 38688959
    10680 8oka:E (3.89) BS01 ADP 3.4.21.53 GO:0004176 ... P36776 38688959
    10681 8oka:F (3.89) BS01 ADP 3.4.21.53 GO:0004176 ... P36776 38688959
    10682 8olx:A (3.1) BS03 ADP ? GO:0000287 ... P43246 N/A
    10683 8om5:A (3.52) BS01 ADP ? GO:0000287 ... P43246 N/A
    10684 8om5:B (3.52) BS01 ADP ? GO:0003677 ... P20585 N/A
    10685 8om7:A (3.74) BS01 ADP 3.4.21.53 GO:0004176 ... P36776 38688959
    10686 8om7:B (3.74) BS01 ADP 3.4.21.53 GO:0004176 ... P36776 38688959
    10687 8om7:C (3.74) BS01 ADP 3.4.21.53 GO:0004176 ... P36776 38688959
    10688 8om7:D (3.74) BS01 ADP 3.4.21.53 GO:0004176 ... P36776 38688959
    10689 8om7:E (3.74) BS01 ADP 3.4.21.53 GO:0004176 ... P36776 38688959
    10690 8om7:F (3.74) BS01 ADP 3.4.21.53 GO:0004176 ... P36776 38688959
    10691 8om9:A (3.32) BS01 ADP ? GO:0000287 ... P43246 N/A
    10692 8om9:B (3.32) BS03 ADP ? GO:0003677 ... P20585 N/A
    10693 8omk:A (2.48) BS02 ADP 2.7.1.3 GO:0004454 ... P50053 39179180
    10694 8omk:B (2.48) BS01 ADP 2.7.1.3 GO:0004454 ... P50053 39179180
    10695 8oo7:A (2.8) BS01 ADP 3.6.4.12 GO:0000492 ... G0RYI5 37384673
    10696 8oo7:B (2.8) BS01 ADP 3.6.4.12 GO:0000492 ... G0RYI5 37384673
    10697 8oo7:C (2.8) BS01 ADP 3.6.4.12 GO:0000492 ... G0RYI5 37384673
    10698 8oo7:D (2.8) BS01 ADP 3.6.4.12 GO:0000492 ... G0RYC2 37384673
    10699 8oo7:E (2.8) BS01 ADP 3.6.4.12 GO:0000492 ... G0RYC2 37384673
    10700 8oo7:F (2.8) BS01 ADP 3.6.4.12 GO:0000492 ... G0RYC2 37384673
    10701 8oo7:G (2.8) BS04 ADP N/A GO:0003677 ... N/A 37384673
    10702 8oo9:G (3.2) BS03 ADP N/A GO:0003677 ... N/A 37384673
    10703 8ooc:A (2.93) BS01 ADP 3.6.4.12 GO:0000492 ... G0RYI5 37384673
    10704 8ooc:B (2.93) BS01 ADP 3.6.4.12 GO:0000492 ... G0RYI5 37384673
    10705 8ooc:C (2.93) BS01 ADP 3.6.4.12 GO:0000492 ... G0RYI5 37384673
    10706 8ooc:D (2.93) BS01 ADP 3.6.4.12 GO:0000492 ... G0RYC2 37384673
    10707 8ooc:E (2.93) BS01 ADP 3.6.4.12 GO:0000492 ... G0RYC2 37384673
    10708 8ooc:F (2.93) BS01 ADP 3.6.4.12 GO:0000492 ... G0RYC2 37384673
    10709 8ooi:A (2.61) BS01 ADP 3.6.4.6 GO:0000502 ... P55072 38326645
    10710 8ooi:B (2.61) BS01 ADP 3.6.4.6 GO:0000502 ... P55072 38326645
    10711 8ooi:C (2.61) BS01 ADP 3.6.4.6 GO:0000502 ... P55072 38326645
    10712 8ooi:D (2.61) BS01 ADP 3.6.4.6 GO:0000502 ... P55072 38326645
    10713 8ooi:E (2.61) BS01 ADP 3.6.4.6 GO:0000502 ... P55072 38326645
    10714 8ooi:F (2.61) BS01 ADP 3.6.4.6 GO:0000502 ... P55072 38326645
    10715 8oop:A (2.7) BS01 ADP 3.6.4.12 GO:0000492 ... G0RYI5 37384673
    10716 8oop:B (2.7) BS01 ADP 3.6.4.12 GO:0000492 ... G0RYI5 37384673
    10717 8oop:C (2.7) BS01 ADP 3.6.4.12 GO:0000492 ... G0RYI5 37384673
    10718 8oop:D (2.7) BS01 ADP 3.6.4.12 GO:0000492 ... G0RYC2 37384673
    10719 8oop:E (2.7) BS01 ADP 3.6.4.12 GO:0000492 ... G0RYC2 37384673
    10720 8oop:F (2.7) BS01 ADP 3.6.4.12 GO:0000492 ... G0RYC2 37384673
    10721 8oop:G (2.7) BS03 ADP N/A GO:0003677 ... N/A 37384673
    10722 8oor:A (2.87) BS01 ADP 3.6.4.12 GO:0000492 ... G0RYI5 37384673
    10723 8oor:B (2.87) BS01 ADP 3.6.4.12 GO:0000492 ... G0RYI5 37384673
    10724 8oor:C (2.87) BS01 ADP 3.6.4.12 GO:0000492 ... G0RYI5 37384673
    10725 8oor:D (2.87) BS01 ADP 3.6.4.12 GO:0000492 ... G0RYC2 37384673
    10726 8oor:E (2.87) BS01 ADP 3.6.4.12 GO:0000492 ... G0RYC2 37384673
    10727 8oor:F (2.87) BS01 ADP 3.6.4.12 GO:0000492 ... G0RYC2 37384673
    10728 8oos:G (3.29) BS03 ADP N/A GO:0003677 ... N/A 37384673
    10729 8ord:A (3.9) BS01 ADP ? GO:0003203 ... F1RCB6 37480427
    10730 8ord:B (3.9) BS01 ADP ? GO:0003203 ... F1RCB6 37480427
    10731 8ord:C (3.9) BS01 ADP ? GO:0003203 ... F1RCB6 37480427
    10732 8ord:D (3.9) BS01 ADP ? GO:0003203 ... F1RCB6 37480427
    10733 8ord:E (3.9) BS01 ADP ? GO:0003203 ... F1RCB6 37480427
    10734 8oru:AAA (2.23) BS01 ADP 6.5.1.9 GO:0005524 ... O93732 38045033
    10735 8oru:BBB (2.23) BS02 ADP 6.5.1.9 GO:0005524 ... O93732 38045033
    10736 8oru:CCC (2.23) BS01 ADP 6.5.1.9 GO:0005524 ... O93732 38045033
    10737 8oru:DDD (2.23) BS01 ADP 6.5.1.9 GO:0005524 ... O93732 38045033
    10738 8osf:F (4.0) BS01 ADP 6.6.1.1 GO:0005524 ... P58571 37737632
    10739 8osg:A (3.8) BS01 ADP 6.6.1.1 GO:0005524 ... P58571 37737632
    10740 8osg:F (3.8) BS01 ADP 6.6.1.1 GO:0005524 ... P58571 37737632
    10741 8ouy:B (3.4) BS01 ADP ? GO:0000400 ... O43502 37344587
    10742 8ouz:B (2.2) BS01 ADP ? GO:0000400 ... O43502 37344587
    10743 8ov1:A (1.67) BS01 ADP 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0004483 ... P0DTD1 N/A
    10744 8ovf:A (7.23) BS01 ADP 3.4.21.53 GO:0004176 ... P36776 38688959
    10745 8ovf:B (7.23) BS01 ADP 3.4.21.53 GO:0004176 ... P36776 38688959
    10746 8ovf:C (7.23) BS01 ADP 3.4.21.53 GO:0004176 ... P36776 38688959
    10747 8ovf:D (7.23) BS01 ADP 3.4.21.53 GO:0004176 ... P36776 38688959
    10748 8ovf:E (7.23) BS01 ADP 3.4.21.53 GO:0004176 ... P36776 38688959
    10749 8ovf:F (7.23) BS01 ADP 3.4.21.53 GO:0004176 ... P36776 38688959
    10750 8ox5:A (2.9) BS01 ADP 7.6.2.1 GO:0000166 ... O43520 37980352
    10751 8oxe:A (2.26) BS01 ADP 2.7.1.134 GO:0000287 ... A4H2J0 38146842
    10752 8p4m:A (2.5) BS01 ADP N/A GO:0000287 ... P0A6F5 39169181
    10753 8p4m:B (2.5) BS01 ADP N/A GO:0000287 ... P0A6F5 39169181
    10754 8p4m:C (2.5) BS01 ADP N/A GO:0000287 ... P0A6F5 39169181
    10755 8p4m:D (2.5) BS01 ADP N/A GO:0000287 ... P0A6F5 39169181
    10756 8p4m:E (2.5) BS01 ADP N/A GO:0000287 ... P0A6F5 39169181
    10757 8p4m:F (2.5) BS01 ADP N/A GO:0000287 ... P0A6F5 39169181
    10758 8p4m:G (2.5) BS01 ADP N/A GO:0000287 ... P0A6F5 39169181
    10759 8p4n:A (2.9) BS01 ADP N/A GO:0000287 ... P0A6F5 39169181
    10760 8p4n:B (2.9) BS01 ADP N/A GO:0000287 ... P0A6F5 39169181
    10761 8p4n:C (2.9) BS01 ADP N/A GO:0000287 ... P0A6F5 39169181
    10762 8p4n:D (2.9) BS01 ADP N/A GO:0000287 ... P0A6F5 39169181
    10763 8p4n:E (2.9) BS01 ADP N/A GO:0000287 ... P0A6F5 39169181
    10764 8p4n:F (2.9) BS01 ADP N/A GO:0000287 ... P0A6F5 39169181
    10765 8p4n:G (2.9) BS01 ADP N/A GO:0000287 ... P0A6F5 39169181
    10766 8p4o:A (3.04) BS01 ADP N/A GO:0000287 ... P0A6F5 39169181
    10767 8p4o:B (3.04) BS01 ADP N/A GO:0000287 ... P0A6F5 39169181
    10768 8p4o:C (3.04) BS01 ADP N/A GO:0000287 ... P0A6F5 39169181
    10769 8p4o:D (3.04) BS01 ADP N/A GO:0000287 ... P0A6F5 39169181
    10770 8p4o:E (3.04) BS01 ADP N/A GO:0000287 ... P0A6F5 39169181
    10771 8p4o:F (3.04) BS01 ADP N/A GO:0000287 ... P0A6F5 39169181
    10772 8p4o:G (3.04) BS01 ADP N/A GO:0000287 ... P0A6F5 39169181
    10773 8p4p:H (9.6) BS01 ADP N/A GO:0005524 ... A0A140NH65 39169181
    10774 8p4p:I (9.6) BS01 ADP N/A GO:0005524 ... A0A140NH65 39169181
    10775 8p4p:J (9.6) BS01 ADP N/A GO:0005524 ... A0A140NH65 39169181
    10776 8p4p:K (9.6) BS01 ADP N/A GO:0005524 ... A0A140NH65 39169181
    10777 8p4p:L (9.6) BS01 ADP N/A GO:0005524 ... A0A140NH65 39169181
    10778 8p4p:M (9.6) BS01 ADP N/A GO:0005524 ... A0A140NH65 39169181
    10779 8p4p:N (9.6) BS01 ADP N/A GO:0005524 ... A0A140NH65 39169181
    10780 8p5e:4 (3.9) BS01 ADP 3.6.4.12 GO:0000727 ... P30665 38760633
    10781 8p5e:6 (3.9) BS03 ADP 3.6.4.12 GO:0000727 ... P53091 38760633
    10782 8p62:4 (3.9) BS01 ADP 3.6.4.12 GO:0000727 ... P30665 38760633
    10783 8p62:4 (3.9) BS03 ADP 3.6.4.12 GO:0000727 ... P30665 38760633
    10784 8p62:6 (3.9) BS03 ADP 3.6.4.12 GO:0000727 ... P53091 38760633
    10785 8p63:4 (3.7) BS02 ADP 3.6.4.12 GO:0000727 ... P30665 38760633
    10786 8p63:4 (3.7) BS03 ADP 3.6.4.12 GO:0000727 ... P30665 38760633
    10787 8p63:6 (3.7) BS03 ADP 3.6.4.12 GO:0000727 ... P53091 38760633
    10788 8p94:A (3.3) BS01 ADP ? GO:0003779 ... P61158 38267598
    10789 8p94:B (3.3) BS02 ADP ? GO:0003779 ... P61160 38267598
    10790 8p94:H (3.3) BS03 ADP 3.6.4.- GO:0005515 ... Q6QAQ1 38267598
    10791 8p94:J (3.3) BS03 ADP 3.6.4.- GO:0005515 ... Q6QAQ1 38267598
    10792 8p94:K (3.3) BS03 ADP 3.6.4.- GO:0005515 ... Q6QAQ1 38267598
    10793 8p94:N (3.3) BS02 ADP 3.6.4.- GO:0005515 ... Q6QAQ1 38267598
    10794 8p94:O (3.3) BS03 ADP 3.6.4.- GO:0005515 ... Q6QAQ1 38267598
    10795 8p94:P (3.3) BS02 ADP 3.6.4.- GO:0005515 ... Q6QAQ1 38267598
    10796 8p94:Q (3.3) BS03 ADP 3.6.4.- GO:0005515 ... Q6QAQ1 38267598
    10797 8p94:R (3.3) BS03 ADP 3.6.4.- GO:0005515 ... Q6QAQ1 38267598
    10798 8p94:S (3.3) BS03 ADP 3.6.4.- GO:0005515 ... Q6QAQ1 38267598
    10799 8p94:W (3.3) BS01 ADP 3.6.4.- GO:0005515 ... Q6QAQ1 38267598
    10800 8pjb:A (3.62) BS02 ADP 3.6.4.13 GO:0000228 ... P24785 37989319

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218