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BioLiP
Download all results in tab-seperated text for 12079 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    10401 8hh7:D (2.5) BS01 ADP 7.1.2.2 GO:0005515 ... P07677 N/A
    10402 8hh8:D (2.8) BS01 ADP 7.1.2.2 GO:0005515 ... P07677 N/A
    10403 8hh9:D (3.6) BS01 ADP 7.1.2.2 GO:0005515 ... P07677 N/A
    10404 8hha:D (3.4) BS01 ADP 7.1.2.2 GO:0005515 ... P07677 N/A
    10405 8hhb:D (3.5) BS01 ADP 7.1.2.2 GO:0005515 ... P07677 N/A
    10406 8hki:G (3.1) BS01 ADP ? GO:0002199 ... P49368 N/A
    10407 8hki:Q (3.1) BS01 ADP ? GO:0002199 ... P50990 N/A
    10408 8hki:Z (3.1) BS01 ADP ? GO:0003723 ... P40227 N/A
    10409 8hki:g (3.1) BS01 ADP ? GO:0002199 ... P49368 N/A
    10410 8hki:q (3.1) BS01 ADP ? GO:0002199 ... P50990 N/A
    10411 8hki:z (3.1) BS01 ADP ? GO:0003723 ... P40227 N/A
    10412 8hl7:B (2.8) BS01 ADP 3.6.4.6 GO:0005524 ... P55072 37456834
    10413 8hod:A (1.95) BS01 ADP ? GO:0004672 ... A0A811MS43 37304725
    10414 8hrz:A (2.7) BS01 ADP 3.6.4.6 GO:0005524 ... P55072 N/A
    10415 8hrz:B (2.7) BS01 ADP 3.6.4.6 GO:0005524 ... P55072 N/A
    10416 8hrz:C (2.7) BS01 ADP 3.6.4.6 GO:0005524 ... P55072 N/A
    10417 8hrz:D (2.7) BS01 ADP 3.6.4.6 GO:0005524 ... P55072 N/A
    10418 8hrz:E (2.7) BS01 ADP 3.6.4.6 GO:0005524 ... P55072 N/A
    10419 8hrz:F (2.7) BS01 ADP 3.6.4.6 GO:0005524 ... P55072 N/A
    10420 8hrz:G (2.7) BS01 ADP 3.6.4.6 GO:0005524 ... P55072 N/A
    10421 8hrz:H (2.7) BS01 ADP 3.6.4.6 GO:0005524 ... P55072 N/A
    10422 8hrz:I (2.7) BS01 ADP 3.6.4.6 GO:0005524 ... P55072 N/A
    10423 8hrz:J (2.7) BS01 ADP 3.6.4.6 GO:0005524 ... P55072 N/A
    10424 8hrz:K (2.7) BS01 ADP 3.6.4.6 GO:0005524 ... P55072 N/A
    10425 8hrz:L (2.7) BS01 ADP 3.6.4.6 GO:0005524 ... P55072 N/A
    10426 8hsj:A (3.6) BS01 ADP 3.6.4.- GO:0003723 ... Q5SJE9 36753546
    10427 8hsj:B (3.6) BS01 ADP 3.6.4.- GO:0003723 ... Q5SJE9 36753546
    10428 8hsj:C (3.6) BS01 ADP 3.6.4.- GO:0003723 ... Q5SJE9 36753546
    10429 8hsj:D (3.6) BS01 ADP 3.6.4.- GO:0003723 ... Q5SJE9 36753546
    10430 8hsj:E (3.6) BS01 ADP 3.6.4.- GO:0003723 ... Q5SJE9 36753546
    10431 8hsj:F (3.6) BS01 ADP 3.6.4.- GO:0003723 ... Q5SJE9 36753546
    10432 8hsl:A (5.8) BS01 ADP 3.6.4.- GO:0003723 ... Q5SJE9 36753546
    10433 8hsl:B (5.8) BS01 ADP 3.6.4.- GO:0003723 ... Q5SJE9 36753546
    10434 8hsl:C (5.8) BS01 ADP 3.6.4.- GO:0003723 ... Q5SJE9 36753546
    10435 8hsl:D (5.8) BS01 ADP 3.6.4.- GO:0003723 ... Q5SJE9 36753546
    10436 8hsl:E (5.8) BS01 ADP 3.6.4.- GO:0003723 ... Q5SJE9 36753546
    10437 8hsl:F (5.8) BS01 ADP 3.6.4.- GO:0003723 ... Q5SJE9 36753546
    10438 8hsr:A (4.0) BS02 ADP 3.6.4.- GO:0003723 ... Q5SJE9 36753546
    10439 8hsr:B (4.0) BS02 ADP 3.6.4.- GO:0003723 ... Q5SJE9 36753546
    10440 8hsr:C (4.0) BS02 ADP 3.6.4.- GO:0003723 ... Q5SJE9 36753546
    10441 8hsr:D (4.0) BS01 ADP 3.6.4.- GO:0003723 ... Q5SJE9 36753546
    10442 8hsr:E (4.0) BS01 ADP 3.6.4.- GO:0003723 ... Q5SJE9 36753546
    10443 8hsr:F (4.0) BS02 ADP 3.6.4.- GO:0003723 ... Q5SJE9 36753546
    10444 8hwa:E (3.7) BS02 ADP 3.6.4.- GO:0004386 ... A0A7H0DN89 38177671
    10445 8hwb:E (3.9) BS02 ADP 3.6.4.- GO:0004386 ... A0A7H0DN89 38177671
    10446 8hwd:A (3.3) BS01 ADP 3.6.4.- GO:0004386 ... A0A7H0DN89 38177671
    10447 8hwd:B (3.3) BS01 ADP 3.6.4.- GO:0004386 ... A0A7H0DN89 38177671
    10448 8hwd:C (3.3) BS01 ADP 3.6.4.- GO:0004386 ... A0A7H0DN89 38177671
    10449 8hwd:D (3.3) BS01 ADP 3.6.4.- GO:0004386 ... A0A7H0DN89 38177671
    10450 8hwd:E (3.3) BS01 ADP 3.6.4.- GO:0004386 ... A0A7H0DN89 38177671
    10451 8hwd:F (3.3) BS01 ADP 3.6.4.- GO:0004386 ... A0A7H0DN89 38177671
    10452 8hwe:F (3.3) BS01 ADP 3.6.4.- GO:0004386 ... A0A7H0DN89 38177671
    10453 8hwf:A (3.3) BS02 ADP 3.6.4.- GO:0004386 ... A0A7H0DN89 38177671
    10454 8hwf:B (3.3) BS02 ADP 3.6.4.- GO:0004386 ... A0A7H0DN89 38177671
    10455 8hwf:C (3.3) BS02 ADP 3.6.4.- GO:0004386 ... A0A7H0DN89 38177671
    10456 8hwf:D (3.3) BS02 ADP 3.6.4.- GO:0004386 ... A0A7H0DN89 38177671
    10457 8hwf:E (3.3) BS02 ADP 3.6.4.- GO:0004386 ... A0A7H0DN89 38177671
    10458 8hwf:F (3.3) BS01 ADP 3.6.4.- GO:0004386 ... A0A7H0DN89 38177671
    10459 8hwg:E (3.0) BS03 ADP 3.6.4.- GO:0004386 ... A0A7H0DN89 38177671
    10460 8hwg:F (3.0) BS01 ADP 3.6.4.- GO:0004386 ... A0A7H0DN89 38177671
    10461 8i1m:A (1.699) BS01 ADP 2.7.1.25
    2.7.7.4
    GO:0000103 ... O43252 37207644
    10462 8i1n:A (2.8) BS01 ADP 2.7.1.25
    2.7.7.4
    GO:0000103 ... O95340 37207644
    10463 8i1n:B (2.8) BS01 ADP 2.7.1.25
    2.7.7.4
    GO:0000103 ... O95340 37207644
    10464 8i1n:C (2.8) BS01 ADP 2.7.1.25
    2.7.7.4
    GO:0000103 ... O95340 37207644
    10465 8i1n:D (2.8) BS01 ADP 2.7.1.25
    2.7.7.4
    GO:0000103 ... O95340 37207644
    10466 8i1o:A (2.4) BS01 ADP 2.7.1.25
    2.7.7.4
    GO:0000103 ... O95340 37207644
    10467 8i1o:B (2.4) BS01 ADP 2.7.1.25
    2.7.7.4
    GO:0000103 ... O95340 37207644
    10468 8i1o:C (2.4) BS01 ADP 2.7.1.25
    2.7.7.4
    GO:0000103 ... O95340 37207644
    10469 8i1o:D (2.4) BS01 ADP 2.7.1.25
    2.7.7.4
    GO:0000103 ... O95340 37207644
    10470 8i1u:A (3.24) BS01 ADP ? GO:0000242 ... P17987 38307855
    10471 8i1u:B (3.24) BS01 ADP ? GO:0002199 ... P78371 38307855
    10472 8i1u:C (3.24) BS01 ADP ? GO:0002199 ... P49368 38307855
    10473 8i1u:D (3.24) BS01 ADP ? GO:0002199 ... P50991 38307855
    10474 8i1u:E (3.24) BS01 ADP ? GO:0003730 ... P48643 38307855
    10475 8i1u:F (3.24) BS01 ADP ? GO:0003723 ... P40227 38307855
    10476 8i1u:G (3.24) BS01 ADP ? GO:0005515 ... Q99832 38307855
    10477 8i1u:H (3.24) BS01 ADP ? GO:0002199 ... P50990 38307855
    10478 8i1u:I (3.24) BS01 ADP ? GO:0000242 ... P17987 38307855
    10479 8i1u:J (3.24) BS01 ADP ? GO:0002199 ... P78371 38307855
    10480 8i1u:K (3.24) BS01 ADP ? GO:0002199 ... P49368 38307855
    10481 8i1u:L (3.24) BS01 ADP ? GO:0002199 ... P50991 38307855
    10482 8i1u:M (3.24) BS01 ADP ? GO:0003730 ... P48643 38307855
    10483 8i1u:N (3.24) BS01 ADP ? GO:0003723 ... P40227 38307855
    10484 8i1u:O (3.24) BS01 ADP ? GO:0005515 ... Q99832 38307855
    10485 8i1u:P (3.24) BS01 ADP ? GO:0002199 ... P50990 38307855
    10486 8i6j:C (3.82) BS01 ADP ? GO:0002199 ... P49368 38307855
    10487 8i9u:A (3.1) BS01 ADP ? GO:0000242 ... P17987 38307855
    10488 8i9u:C (3.1) BS01 ADP ? GO:0002199 ... P49368 38307855
    10489 8i9u:D (3.1) BS01 ADP ? GO:0002199 ... P50991 38307855
    10490 8i9u:F (3.1) BS01 ADP ? GO:0003723 ... P40227 38307855
    10491 8i9u:H (3.1) BS01 ADP ? GO:0002199 ... P50990 38307855
    10492 8i9u:I (3.1) BS01 ADP ? GO:0000242 ... P17987 38307855
    10493 8i9u:K (3.1) BS01 ADP ? GO:0002199 ... P49368 38307855
    10494 8i9u:L (3.1) BS01 ADP ? GO:0002199 ... P50991 38307855
    10495 8i9u:N (3.1) BS01 ADP ? GO:0003723 ... P40227 38307855
    10496 8i9u:P (3.1) BS01 ADP ? GO:0002199 ... P50990 38307855
    10497 8i9z:CW (2.7) BS02 ADP 3.6.4.13 GO:0003676 ... G0RYG4 37129998
    10498 8ia0:CW (2.7) BS02 ADP 3.6.4.13 GO:0003676 ... G0RYG4 37129998
    10499 8iah:A (3.6) BS01 ADP 3.6.4.- GO:0005515 ... Q6QAQ1 37044097
    10500 8iah:B (3.6) BS01 ADP 3.6.4.- GO:0005515 ... Q6QAQ1 37044097
    10501 8iah:C (3.6) BS01 ADP 3.6.4.- GO:0005515 ... Q6QAQ1 37044097
    10502 8iah:D (3.6) BS01 ADP 3.6.4.- GO:0005515 ... Q6QAQ1 37044097
    10503 8iah:E (3.6) BS01 ADP 3.6.4.- GO:0005515 ... Q6QAQ1 37044097
    10504 8iah:F (3.6) BS01 ADP 3.6.4.- GO:0005515 ... Q6QAQ1 37044097
    10505 8iah:G (3.6) BS01 ADP 3.6.4.- GO:0005515 ... Q6QAQ1 37044097
    10506 8iah:H (3.6) BS01 ADP 3.6.4.- GO:0005515 ... Q6QAQ1 37044097
    10507 8iah:I (3.6) BS01 ADP 3.6.4.- GO:0005515 ... Q6QAQ1 37044097
    10508 8iah:J (3.6) BS01 ADP 3.6.4.- GO:0005515 ... Q6QAQ1 37044097
    10509 8iah:K (3.6) BS01 ADP 3.6.4.- GO:0005515 ... Q6QAQ1 37044097
    10510 8iah:L (3.6) BS01 ADP 3.6.4.- GO:0005515 ... Q6QAQ1 37044097
    10511 8iai:A (3.5) BS01 ADP 3.6.4.- GO:0005515 ... Q6QAQ1 37044097
    10512 8iai:B (3.5) BS01 ADP 3.6.4.- GO:0005515 ... Q6QAQ1 37044097
    10513 8iai:C (3.5) BS01 ADP 3.6.4.- GO:0005515 ... Q6QAQ1 37044097
    10514 8iai:D (3.5) BS01 ADP 3.6.4.- GO:0005515 ... Q6QAQ1 37044097
    10515 8iai:E (3.5) BS01 ADP 3.6.4.- GO:0005515 ... Q6QAQ1 37044097
    10516 8iai:F (3.5) BS01 ADP 3.6.4.- GO:0005515 ... Q6QAQ1 37044097
    10517 8iai:G (3.5) BS01 ADP 3.6.4.- GO:0005515 ... Q6QAQ1 37044097
    10518 8iai:H (3.5) BS01 ADP 3.6.4.- GO:0005515 ... Q6QAQ1 37044097
    10519 8iai:I (3.5) BS01 ADP 3.6.4.- GO:0005515 ... Q6QAQ1 37044097
    10520 8iai:J (3.5) BS01 ADP 3.6.4.- GO:0005515 ... Q6QAQ1 37044097
    10521 8iai:K (3.5) BS01 ADP 3.6.4.- GO:0005515 ... Q6QAQ1 37044097
    10522 8iao:O (4.2) BS01 ADP N/A N/A Q99LC3 N/A
    10523 8iaq:O (3.4) BS01 ADP N/A N/A Q99LC3 N/A
    10524 8ib2:B (3.8) BS01 ADP 3.6.4.- GO:0005515 ... Q6QAQ1 37044097
    10525 8ib2:C (3.8) BS01 ADP 3.6.4.- GO:0005515 ... Q6QAQ1 37044097
    10526 8ib2:D (3.8) BS01 ADP 3.6.4.- GO:0005515 ... Q6QAQ1 37044097
    10527 8ib2:E (3.8) BS01 ADP 3.6.4.- GO:0005515 ... Q6QAQ1 37044097
    10528 8ib2:F (3.8) BS01 ADP 3.6.4.- GO:0005515 ... Q6QAQ1 37044097
    10529 8ib4:O (4.3) BS01 ADP N/A N/A Q99LC3 N/A
    10530 8ib6:O (3.3) BS01 ADP N/A N/A Q99LC3 N/A
    10531 8ib9:O (4.3) BS01 ADP N/A N/A Q99LC3 N/A
    10532 8ibb:O (3.3) BS01 ADP N/A N/A Q99LC3 N/A
    10533 8ibd:O (4.2) BS01 ADP N/A N/A Q99LC3 N/A
    10534 8ibf:O (3.3) BS01 ADP N/A N/A Q99LC3 N/A
    10535 8ic2:O (6.3) BS01 ADP N/A N/A Q99LC3 N/A
    10536 8ic4:O (3.2) BS01 ADP N/A N/A Q99LC3 N/A
    10537 8ies:P (3.73) BS03 ADP 7.6.2.- GO:0000166 ... Q9NQ11 37031211
    10538 8ifx:A (2.0) BS02 ADP 2.3.1.234 GO:0002949 ... O66986 N/A
    10539 8igq:A (5.7) BS01 ADP ? GO:0000287 ... O05779 38044344
    10540 8igq:B (5.7) BS01 ADP ? GO:0000287 ... O05779 38044344
    10541 8igv:A (3.15) BS01 ADP 7.2.2.1 GO:0005515 ... Q08636 37414880
    10542 8igv:A (3.15) BS02 ADP 7.2.2.1 GO:0005515 ... Q08636 37414880
    10543 8igv:B (3.15) BS01 ADP 7.2.2.1 GO:0005515 ... Q08636 37414880
    10544 8igv:C (3.15) BS01 ADP 7.2.2.1 GO:0005515 ... Q08636 37414880
    10545 8igv:C (3.15) BS02 ADP 7.2.2.1 GO:0005515 ... Q08636 37414880
    10546 8igv:D (3.15) BS01 ADP ? GO:0005515 ... Q08637 37414880
    10547 8igv:E (3.15) BS01 ADP ? GO:0005515 ... Q08637 37414880
    10548 8igw:A (4.2) BS01 ADP 7.2.2.1 GO:0005515 ... Q08636 37414880
    10549 8igw:B (4.2) BS01 ADP 7.2.2.1 GO:0005515 ... Q08636 37414880
    10550 8igw:C (4.2) BS01 ADP 7.2.2.1 GO:0005515 ... Q08636 37414880
    10551 8igw:C (4.2) BS02 ADP 7.2.2.1 GO:0005515 ... Q08636 37414880
    10552 8igw:D (4.2) BS01 ADP ? GO:0005515 ... Q08637 37414880
    10553 8igw:G (4.2) BS01 ADP 7.2.2.1 GO:0005515 ... Q08636 37414880
    10554 8igw:H (4.2) BS01 ADP 7.2.2.1 GO:0005515 ... Q08636 37414880
    10555 8igw:H (4.2) BS03 ADP 7.2.2.1 GO:0005515 ... Q08636 37414880
    10556 8igw:I (4.2) BS01 ADP 7.2.2.1 GO:0005515 ... Q08636 37414880
    10557 8igw:I (4.2) BS03 ADP 7.2.2.1 GO:0005515 ... Q08636 37414880
    10558 8igw:J (4.2) BS01 ADP ? GO:0005515 ... Q08637 37414880
    10559 8igw:L (4.2) BS01 ADP ? GO:0005515 ... Q08637 37414880
    10560 8ijl:A (2.62) BS03 ADP 7.2.2.13
    7.2.2.19
    GO:0000166 ... P54708 37482134
    10561 8iww:A (3.71) BS02 ADP 7.2.2.10 GO:0000139 ... P98194 37258749
    10562 8j0f:A (3.3) BS03 ADP 1.2.1.41
    2.7.2.11
    GO:0003824 ... P54888 38740943
    10563 8j0f:B (3.3) BS03 ADP 1.2.1.41
    2.7.2.11
    GO:0003824 ... P54888 38740943
    10564 8j0f:C (3.3) BS03 ADP 1.2.1.41
    2.7.2.11
    GO:0003824 ... P54888 38740943
    10565 8j0f:D (3.3) BS03 ADP 1.2.1.41
    2.7.2.11
    GO:0003824 ... P54888 38740943
    10566 8j0s:C (2.58) BS02 ADP 7.1.2.2 GO:0005524 ... P9WPU7 38961288
    10567 8j0s:D (2.58) BS01 ADP 7.1.2.2 GO:0005524 ... P9WPU5 38961288
    10568 8j0s:F (2.58) BS01 ADP 7.1.2.2 GO:0005524 ... P9WPU5 38961288
    10569 8j0t:C (2.8) BS02 ADP 7.1.2.2 GO:0005524 ... P9WPU7 38961288
    10570 8j0t:D (2.8) BS01 ADP 7.1.2.2 GO:0005524 ... P9WPU5 38961288
    10571 8j0t:F (2.8) BS01 ADP 7.1.2.2 GO:0005524 ... P9WPU5 38961288
    10572 8j27:B (3.6) BS03 ADP 1.2.1.41
    2.7.2.11
    GO:0003824 ... P54888 N/A
    10573 8j28:C (3.7) BS04 ADP 1.2.1.41
    2.7.2.11
    GO:0003824 ... P54888 N/A
    10574 8j5f:A (1.7) BS02 ADP ? GO:0000166 ... A0A370RDE4 N/A
    10575 8jfl:B (2.9) BS02 ADP ? GO:0005515 ... Q93100 38548794
    10576 8jfl:F (2.9) BS02 ADP ? GO:0005515 ... Q93100 38548794
    10577 8jfl:J (2.9) BS03 ADP ? GO:0005515 ... Q93100 38548794
    10578 8jfl:N (2.9) BS03 ADP ? GO:0005515 ... Q93100 38548794
    10579 8jgk:A (4.04) BS01 ADP N/A N/A P51791 39107281
    10580 8jgk:B (4.04) BS01 ADP N/A N/A P51791 39107281
    10581 8jjk:A (1.7) BS01 ADP 3.6.1.41 GO:0000166 ... A0A0H2URF8 38701795
    10582 8jon:A (2.51) BS03 ADP 2.7.11.1
    3.6.4.-
    GO:0000287 ... Q79PF4 N/A
    10583 8jon:A (2.51) BS05 ADP 2.7.11.1
    3.6.4.-
    GO:0000287 ... Q79PF4 N/A
    10584 8jon:B (2.51) BS02 ADP 2.7.11.1
    3.6.4.-
    GO:0000287 ... Q79PF4 N/A
    10585 8jon:B (2.51) BS05 ADP 2.7.11.1
    3.6.4.-
    GO:0000287 ... Q79PF4 N/A
    10586 8jon:C (2.51) BS02 ADP 2.7.11.1
    3.6.4.-
    GO:0000287 ... Q79PF4 N/A
    10587 8jon:C (2.51) BS05 ADP 2.7.11.1
    3.6.4.-
    GO:0000287 ... Q79PF4 N/A
    10588 8jon:D (2.51) BS02 ADP 2.7.11.1
    3.6.4.-
    GO:0000287 ... Q79PF4 N/A
    10589 8jon:D (2.51) BS05 ADP 2.7.11.1
    3.6.4.-
    GO:0000287 ... Q79PF4 N/A
    10590 8jon:E (2.51) BS02 ADP 2.7.11.1
    3.6.4.-
    GO:0000287 ... Q79PF4 N/A
    10591 8jon:E (2.51) BS05 ADP 2.7.11.1
    3.6.4.-
    GO:0000287 ... Q79PF4 N/A
    10592 8jon:F (2.51) BS02 ADP 2.7.11.1
    3.6.4.-
    GO:0000287 ... Q79PF4 N/A
    10593 8jon:F (2.51) BS05 ADP 2.7.11.1
    3.6.4.-
    GO:0000287 ... Q79PF4 N/A
    10594 8jr0:C (2.8) BS02 ADP 7.1.2.2 GO:0005524 ... P9WPU7 38961288
    10595 8jr0:D (2.8) BS01 ADP 7.1.2.2 GO:0005524 ... P9WPU5 38961288
    10596 8jr0:F (2.8) BS01 ADP 7.1.2.2 GO:0005524 ... P9WPU5 38961288
    10597 8juv:A (2.09) BS01 ADP 2.7.11.1 GO:0004672 ... Q0JA29 N/A
    10598 8juw:A (3.79) BS01 ADP 3.6.1.- GO:0005524 ... Q6PL18 37770645
    10599 8juy:A (4.34) BS01 ADP 3.6.1.- GO:0005524 ... Q6PL18 37770645
    10600 8juz:A (4.29) BS01 ADP 3.6.1.- GO:0005524 ... Q6PL18 37770645

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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