Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 12079 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
  • Sort results by
    << < 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 > >>
    Go to page

    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    8601 7x0v:K (3.2) BS01 ADP ? GO:0003723 ... P40227 37193829
    8602 7x0v:L (3.2) BS01 ADP ? GO:0002199 ... P78371 37193829
    8603 7x0v:M (3.2) BS01 ADP ? GO:0002199 ... P50991 37193829
    8604 7x0v:N (3.2) BS01 ADP ? GO:0002199 ... P49368 37193829
    8605 7x0v:O (3.2) BS02 ADP ? GO:0005515 ... Q99832 37193829
    8606 7x0v:P (3.2) BS01 ADP ? GO:0002199 ... P50990 37193829
    8607 7x0v:a (3.2) BS01 ADP ? GO:0000242 ... P17987 37193829
    8608 7x0v:e (3.2) BS01 ADP ? GO:0003730 ... P48643 37193829
    8609 7x0v:z (3.2) BS01 ADP ? GO:0003723 ... P40227 37193829
    8610 7x3t:V (5.4) BS03 ADP 3.6.4.- GO:0000182 ... P38144 38177688
    8611 7x3u:A (3.3) BS01 ADP ? GO:0000242 ... P17987 37193829
    8612 7x3u:B (3.3) BS01 ADP ? GO:0002199 ... P78371 37193829
    8613 7x3u:D (3.3) BS01 ADP ? GO:0002199 ... P50991 37193829
    8614 7x3u:E (3.3) BS01 ADP ? GO:0003730 ... P48643 37193829
    8615 7x3u:G (3.3) BS01 ADP ? GO:0002199 ... P49368 37193829
    8616 7x3u:H (3.3) BS01 ADP ? GO:0005515 ... Q99832 37193829
    8617 7x3u:Q (3.3) BS01 ADP ? GO:0002199 ... P50990 37193829
    8618 7x3u:Z (3.3) BS01 ADP ? GO:0003723 ... P40227 37193829
    8619 7x3u:a (3.3) BS01 ADP ? GO:0000242 ... P17987 37193829
    8620 7x3u:b (3.3) BS01 ADP ? GO:0002199 ... P78371 37193829
    8621 7x3u:d (3.3) BS01 ADP ? GO:0002199 ... P50991 37193829
    8622 7x3u:e (3.3) BS01 ADP ? GO:0003730 ... P48643 37193829
    8623 7x3u:g (3.3) BS01 ADP ? GO:0002199 ... P49368 37193829
    8624 7x3u:h (3.3) BS01 ADP ? GO:0005515 ... Q99832 37193829
    8625 7x3u:q (3.3) BS01 ADP ? GO:0002199 ... P50990 37193829
    8626 7x3u:z (3.3) BS01 ADP ? GO:0003723 ... P40227 37193829
    8627 7x3w:K (3.1) BS03 ADP 3.6.4.- GO:0000182 ... P38144 38177688
    8628 7x54:A (3.9) BS01 ADP N/A N/A N/A N/A
    8629 7x54:B (3.9) BS01 ADP N/A N/A N/A N/A
    8630 7x54:C (3.9) BS01 ADP N/A N/A N/A N/A
    8631 7x54:D (3.9) BS01 ADP N/A N/A N/A N/A
    8632 7x54:E (3.9) BS01 ADP N/A N/A N/A N/A
    8633 7x5b:A (2.16) BS01 ADP 3.6.4.12 GO:0000400 ... Q51426 37025142
    8634 7xdw:A (1.926) BS01 ADP 2.7.11.1 GO:0004672 ... Q9SCZ4 36774537
    8635 7xdw:B (1.926) BS01 ADP 2.7.11.1 GO:0004672 ... Q9SCZ4 36774537
    8636 7xdx:A (2.23) BS01 ADP 2.7.11.1 GO:0004672 ... Q9SCZ4 36774537
    8637 7xdx:B (2.23) BS01 ADP 2.7.11.1 GO:0004672 ... Q9SCZ4 36774537
    8638 7xdy:A (2.28) BS01 ADP 2.7.11.1 GO:0004672 ... Q9SCZ4 36774537
    8639 7xdy:B (2.28) BS01 ADP 2.7.11.1 GO:0004672 ... Q9SCZ4 36774537
    8640 7xey:A (2.29) BS01 ADP ? GO:0000304 ... Q9SU72 35857645
    8641 7xey:B (2.29) BS01 ADP 2.3.1.- GO:0001666 ... Q9S745 35857645
    8642 7xha:A (3.35) BS02 ADP 7.4.2.8 GO:0005524 ... P28366 36598944
    8643 7xhb:A (3.33) BS01 ADP 7.4.2.8 GO:0005524 ... P28366 36598944
    8644 7xkp:F (3.0) BS02 ADP 7.1.2.2 GO:0005515 ... P07677 36741449
    8645 7xkq:C (3.3) BS02 ADP 7.1.2.2 GO:0005524 ... A0A0M3VGF9 36741449
    8646 7xkq:D (3.3) BS02 ADP 7.1.2.2 GO:0005515 ... P07677 36741449
    8647 7xkr:D (2.6) BS01 ADP 7.1.2.2 GO:0005515 ... P07677 36741449
    8648 7xkr:F (2.6) BS01 ADP 7.1.2.2 GO:0005515 ... P07677 36741449
    8649 7xmu:A (2.3) BS02 ADP 2.7.6.1 GO:0000287 ... P0A717 35736577
    8650 7xmu:A (2.3) BS03 ADP 2.7.6.1 GO:0000287 ... P0A717 35736577
    8651 7xmu:A (2.3) BS04 ADP 2.7.6.1 GO:0000287 ... P0A717 35736577
    8652 7xmu:A (2.3) BS05 ADP 2.7.6.1 GO:0000287 ... P0A717 35736577
    8653 7xmu:B (2.3) BS01 ADP 2.7.6.1 GO:0000287 ... P0A717 35736577
    8654 7xmu:B (2.3) BS03 ADP 2.7.6.1 GO:0000287 ... P0A717 35736577
    8655 7xmu:B (2.3) BS04 ADP 2.7.6.1 GO:0000287 ... P0A717 35736577
    8656 7xmu:B (2.3) BS05 ADP 2.7.6.1 GO:0000287 ... P0A717 35736577
    8657 7xmu:C (2.3) BS01 ADP 2.7.6.1 GO:0000287 ... P0A717 35736577
    8658 7xmu:C (2.3) BS02 ADP 2.7.6.1 GO:0000287 ... P0A717 35736577
    8659 7xmu:C (2.3) BS04 ADP 2.7.6.1 GO:0000287 ... P0A717 35736577
    8660 7xmu:C (2.3) BS05 ADP 2.7.6.1 GO:0000287 ... P0A717 35736577
    8661 7xmu:D (2.3) BS02 ADP 2.7.6.1 GO:0000287 ... P0A717 35736577
    8662 7xmu:D (2.3) BS03 ADP 2.7.6.1 GO:0000287 ... P0A717 35736577
    8663 7xmu:D (2.3) BS04 ADP 2.7.6.1 GO:0000287 ... P0A717 35736577
    8664 7xmu:D (2.3) BS05 ADP 2.7.6.1 GO:0000287 ... P0A717 35736577
    8665 7xmu:E (2.3) BS01 ADP 2.7.6.1 GO:0000287 ... P0A717 35736577
    8666 7xmu:E (2.3) BS03 ADP 2.7.6.1 GO:0000287 ... P0A717 35736577
    8667 7xmu:E (2.3) BS04 ADP 2.7.6.1 GO:0000287 ... P0A717 35736577
    8668 7xmu:E (2.3) BS05 ADP 2.7.6.1 GO:0000287 ... P0A717 35736577
    8669 7xmu:F (2.3) BS01 ADP 2.7.6.1 GO:0000287 ... P0A717 35736577
    8670 7xmu:F (2.3) BS02 ADP 2.7.6.1 GO:0000287 ... P0A717 35736577
    8671 7xmu:F (2.3) BS03 ADP 2.7.6.1 GO:0000287 ... P0A717 35736577
    8672 7xmu:F (2.3) BS05 ADP 2.7.6.1 GO:0000287 ... P0A717 35736577
    8673 7xmv:A (2.6) BS02 ADP 2.7.6.1 GO:0000287 ... P0A717 35736577
    8674 7xmv:A (2.6) BS05 ADP 2.7.6.1 GO:0000287 ... P0A717 35736577
    8675 7xmv:B (2.6) BS01 ADP 2.7.6.1 GO:0000287 ... P0A717 35736577
    8676 7xmv:B (2.6) BS04 ADP 2.7.6.1 GO:0000287 ... P0A717 35736577
    8677 7xmv:C (2.6) BS03 ADP 2.7.6.1 GO:0000287 ... P0A717 35736577
    8678 7xmv:C (2.6) BS05 ADP 2.7.6.1 GO:0000287 ... P0A717 35736577
    8679 7xmv:D (2.6) BS01 ADP 2.7.6.1 GO:0000287 ... P0A717 35736577
    8680 7xmv:D (2.6) BS03 ADP 2.7.6.1 GO:0000287 ... P0A717 35736577
    8681 7xmv:E (2.6) BS02 ADP 2.7.6.1 GO:0000287 ... P0A717 35736577
    8682 7xmv:E (2.6) BS04 ADP 2.7.6.1 GO:0000287 ... P0A717 35736577
    8683 7xmv:F (2.6) BS01 ADP 2.7.6.1 GO:0000287 ... P0A717 35736577
    8684 7xmv:F (2.6) BS04 ADP 2.7.6.1 GO:0000287 ... P0A717 35736577
    8685 7y04:A (3.5) BS02 ADP ? GO:0001890 ... P11499 36649707
    8686 7y04:B (3.5) BS02 ADP ? GO:0001890 ... P11499 36649707
    8687 7y1k:A (3.8) BS04 ADP ? GO:0000165 ... Q63563 37330603
    8688 7y1m:A (3.57) BS04 ADP ? GO:0000165 ... Q63563 37330603
    8689 7y1n:A (3.61) BS01 ADP ? GO:0000165 ... Q63563 37330603
    8690 7y4w:A (3.67) BS01 ADP 3.6.4.6 GO:0000502 ... P55072 37831771
    8691 7y4w:B (3.67) BS01 ADP 3.6.4.6 GO:0000502 ... P55072 37831771
    8692 7y4w:E (3.67) BS01 ADP 3.6.4.6 GO:0000502 ... P55072 37831771
    8693 7y4w:F (3.67) BS01 ADP 3.6.4.6 GO:0000502 ... P55072 37831771
    8694 7y53:A (3.61) BS01 ADP 3.6.4.6 GO:0000502 ... P55072 37831771
    8695 7y53:A (3.61) BS02 ADP 3.6.4.6 GO:0000502 ... P55072 37831771
    8696 7y53:B (3.61) BS01 ADP 3.6.4.6 GO:0000502 ... P55072 37831771
    8697 7y53:B (3.61) BS02 ADP 3.6.4.6 GO:0000502 ... P55072 37831771
    8698 7y53:C (3.61) BS01 ADP 3.6.4.6 GO:0000502 ... P55072 37831771
    8699 7y53:C (3.61) BS02 ADP 3.6.4.6 GO:0000502 ... P55072 37831771
    8700 7y53:D (3.61) BS01 ADP 3.6.4.6 GO:0000502 ... P55072 37831771
    8701 7y53:D (3.61) BS02 ADP 3.6.4.6 GO:0000502 ... P55072 37831771
    8702 7y53:E (3.61) BS01 ADP 3.6.4.6 GO:0000502 ... P55072 37831771
    8703 7y53:E (3.61) BS02 ADP 3.6.4.6 GO:0000502 ... P55072 37831771
    8704 7y53:F (3.61) BS01 ADP 3.6.4.6 GO:0000502 ... P55072 37831771
    8705 7y53:F (3.61) BS02 ADP 3.6.4.6 GO:0000502 ... P55072 37831771
    8706 7y59:A (4.51) BS02 ADP 3.6.4.6 GO:0000502 ... P55072 37831771
    8707 7y59:B (4.51) BS02 ADP 3.6.4.6 GO:0000502 ... P55072 37831771
    8708 7y59:C (4.51) BS02 ADP 3.6.4.6 GO:0000502 ... P55072 37831771
    8709 7y59:D (4.51) BS02 ADP 3.6.4.6 GO:0000502 ... P55072 37831771
    8710 7y59:E (4.51) BS02 ADP 3.6.4.6 GO:0000502 ... P55072 37831771
    8711 7y59:F (4.51) BS02 ADP 3.6.4.6 GO:0000502 ... P55072 37831771
    8712 7y5a:D (3.5) BS01 ADP 7.1.2.2 GO:0005524 ... A0R200 36445139
    8713 7y5a:F (3.5) BS01 ADP 7.1.2.2 GO:0005524 ... A0R200 36445139
    8714 7y5b:D (4.4) BS01 ADP 7.1.2.2 GO:0005524 ... A0R200 36445139
    8715 7y5c:E (4.7) BS01 ADP 7.1.2.2 GO:0005524 ... A0R200 36445139
    8716 7y8r:I (4.4) BS03 ADP 3.6.4.- GO:0000122 ... P51532 36496390
    8717 7yk1:A (3.08) BS02 ADP 2.7.6.1 GO:0000287 ... P11908 37248548
    8718 7yk1:A (3.08) BS03 ADP 2.7.6.1 GO:0000287 ... P11908 37248548
    8719 7yk1:A (3.08) BS04 ADP 2.7.6.1 GO:0000287 ... P11908 37248548
    8720 7yk1:A (3.08) BS05 ADP 2.7.6.1 GO:0000287 ... P11908 37248548
    8721 7yk1:A (3.08) BS06 ADP 2.7.6.1 GO:0000287 ... P11908 37248548
    8722 7yk1:B (3.08) BS02 ADP 2.7.6.1 GO:0000287 ... P11908 37248548
    8723 7yk1:B (3.08) BS03 ADP 2.7.6.1 GO:0000287 ... P11908 37248548
    8724 7yk1:B (3.08) BS04 ADP 2.7.6.1 GO:0000287 ... P11908 37248548
    8725 7yk1:B (3.08) BS05 ADP 2.7.6.1 GO:0000287 ... P11908 37248548
    8726 7yk1:B (3.08) BS06 ADP 2.7.6.1 GO:0000287 ... P11908 37248548
    8727 7yk1:C (3.08) BS01 ADP 2.7.6.1 GO:0000287 ... P11908 37248548
    8728 7yk1:C (3.08) BS02 ADP 2.7.6.1 GO:0000287 ... P11908 37248548
    8729 7yk1:C (3.08) BS03 ADP 2.7.6.1 GO:0000287 ... P11908 37248548
    8730 7yk1:C (3.08) BS05 ADP 2.7.6.1 GO:0000287 ... P11908 37248548
    8731 7yk1:D (3.08) BS01 ADP 2.7.6.1 GO:0000287 ... P11908 37248548
    8732 7yk1:D (3.08) BS02 ADP 2.7.6.1 GO:0000287 ... P11908 37248548
    8733 7yk1:D (3.08) BS04 ADP 2.7.6.1 GO:0000287 ... P11908 37248548
    8734 7yk1:D (3.08) BS05 ADP 2.7.6.1 GO:0000287 ... P11908 37248548
    8735 7yk1:D (3.08) BS06 ADP 2.7.6.1 GO:0000287 ... P11908 37248548
    8736 7yk1:E (3.08) BS01 ADP 2.7.6.1 GO:0000287 ... P11908 37248548
    8737 7yk1:E (3.08) BS02 ADP 2.7.6.1 GO:0000287 ... P11908 37248548
    8738 7yk1:E (3.08) BS03 ADP 2.7.6.1 GO:0000287 ... P11908 37248548
    8739 7yk1:E (3.08) BS05 ADP 2.7.6.1 GO:0000287 ... P11908 37248548
    8740 7yk1:F (3.08) BS01 ADP 2.7.6.1 GO:0000287 ... P11908 37248548
    8741 7yk1:F (3.08) BS02 ADP 2.7.6.1 GO:0000287 ... P11908 37248548
    8742 7yk1:F (3.08) BS03 ADP 2.7.6.1 GO:0000287 ... P11908 37248548
    8743 7yk1:F (3.08) BS04 ADP 2.7.6.1 GO:0000287 ... P11908 37248548
    8744 7yk1:F (3.08) BS05 ADP 2.7.6.1 GO:0000287 ... P11908 37248548
    8745 7ykt:B (5.9) BS02 ADP 3.6.4.10 GO:0005515 ... P32794 36351914
    8746 7ykt:C (5.9) BS02 ADP 3.6.4.10 GO:0005515 ... P32794 36351914
    8747 7ykt:F (5.9) BS02 ADP 3.6.4.10 GO:0005515 ... P32794 36351914
    8748 7ykz:A (4.3) BS01 ADP 3.6.4.10 GO:0005515 ... P32794 36351914
    8749 7ykz:B (4.3) BS01 ADP 3.6.4.10 GO:0005515 ... P32794 36351914
    8750 7ykz:C (4.3) BS03 ADP 3.6.4.10 GO:0005515 ... P32794 36351914
    8751 7ykz:D (4.3) BS01 ADP 3.6.4.10 GO:0005515 ... P32794 36351914
    8752 7ykz:E (4.3) BS01 ADP 3.6.4.10 GO:0005515 ... P32794 36351914
    8753 7ykz:F (4.3) BS01 ADP 3.6.4.10 GO:0005515 ... P32794 36351914
    8754 7ylw:A (3.39) BS01 ADP ? GO:0005515 ... P12612 36921056
    8755 7ylw:B (3.39) BS01 ADP ? GO:0005515 ... P39076 36921056
    8756 7ylw:D (3.39) BS01 ADP ? GO:0005524 ... P39078 36921056
    8757 7ylw:E (3.39) BS01 ADP ? GO:0005524 ... P40413 36921056
    8758 7ylw:G (3.39) BS01 ADP ? GO:0005524 ... P39077 36921056
    8759 7ylw:H (3.39) BS01 ADP ? GO:0005524 ... P42943 36921056
    8760 7ylw:Q (3.39) BS01 ADP ? GO:0005524 ... P47079 36921056
    8761 7ylw:Z (3.39) BS01 ADP ? GO:0005524 ... P39079 36921056
    8762 7ylw:a (3.39) BS01 ADP ? GO:0005515 ... P12612 36921056
    8763 7ylw:b (3.39) BS01 ADP ? GO:0005515 ... P39076 36921056
    8764 7ylw:d (3.39) BS01 ADP ? GO:0005524 ... P39078 36921056
    8765 7ylw:e (3.39) BS01 ADP ? GO:0005524 ... P40413 36921056
    8766 7ylw:g (3.39) BS01 ADP ? GO:0005524 ... P39077 36921056
    8767 7ylw:h (3.39) BS01 ADP ? GO:0005524 ... P42943 36921056
    8768 7ylw:q (3.39) BS01 ADP ? GO:0005524 ... P47079 36921056
    8769 7ylw:z (3.39) BS01 ADP ? GO:0005524 ... P39079 36921056
    8770 7ylx:A (3.2) BS01 ADP ? GO:0005515 ... P12612 36921056
    8771 7ylx:B (3.2) BS01 ADP ? GO:0005515 ... P39076 36921056
    8772 7ylx:D (3.2) BS01 ADP ? GO:0005524 ... P39078 36921056
    8773 7ylx:E (3.2) BS01 ADP ? GO:0005524 ... P40413 36921056
    8774 7ylx:G (3.2) BS01 ADP ? GO:0005524 ... P39077 36921056
    8775 7ylx:H (3.2) BS01 ADP ? GO:0005524 ... P42943 36921056
    8776 7ylx:Q (3.2) BS01 ADP ? GO:0005524 ... P47079 36921056
    8777 7ylx:Z (3.2) BS01 ADP ? GO:0005524 ... P39079 36921056
    8778 7ylx:a (3.2) BS01 ADP ? GO:0005515 ... P12612 36921056
    8779 7ylx:b (3.2) BS01 ADP ? GO:0005515 ... P39076 36921056
    8780 7ylx:d (3.2) BS01 ADP ? GO:0005524 ... P39078 36921056
    8781 7ylx:e (3.2) BS01 ADP ? GO:0005524 ... P40413 36921056
    8782 7ylx:g (3.2) BS01 ADP ? GO:0005524 ... P39077 36921056
    8783 7ylx:h (3.2) BS01 ADP ? GO:0005524 ... P42943 36921056
    8784 7ylx:q (3.2) BS01 ADP ? GO:0005524 ... P47079 36921056
    8785 7ylx:z (3.2) BS01 ADP ? GO:0005524 ... P39079 36921056
    8786 7yly:A (3.05) BS01 ADP ? GO:0005515 ... P12612 36921056
    8787 7yly:B (3.05) BS01 ADP ? GO:0005515 ... P39076 36921056
    8788 7yly:D (3.05) BS01 ADP ? GO:0005524 ... P39078 36921056
    8789 7yly:E (3.05) BS01 ADP ? GO:0005524 ... P40413 36921056
    8790 7yly:G (3.05) BS01 ADP ? GO:0005524 ... P39077 36921056
    8791 7yly:H (3.05) BS01 ADP ? GO:0005524 ... P42943 36921056
    8792 7yly:Q (3.05) BS01 ADP ? GO:0005524 ... P47079 36921056
    8793 7yly:Z (3.05) BS01 ADP ? GO:0005524 ... P39079 36921056
    8794 7yly:a (3.05) BS01 ADP ? GO:0005515 ... P12612 36921056
    8795 7yly:b (3.05) BS01 ADP ? GO:0005515 ... P39076 36921056
    8796 7yly:d (3.05) BS01 ADP ? GO:0005524 ... P39078 36921056
    8797 7yly:e (3.05) BS01 ADP ? GO:0005524 ... P40413 36921056
    8798 7yly:g (3.05) BS01 ADP ? GO:0005524 ... P39077 36921056
    8799 7yly:h (3.05) BS01 ADP ? GO:0005524 ... P42943 36921056
    8800 7yly:q (3.05) BS01 ADP ? GO:0005524 ... P47079 36921056

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218