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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 12079 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    601 1q3s:B (3.0) BS01 ADP 3.6.4.9 GO:0005524 ... P61112 14729342
    602 1q3s:C (3.0) BS01 ADP 3.6.4.9 GO:0005524 ... P61112 14729342
    603 1q3s:D (3.0) BS01 ADP 3.6.4.9 GO:0005524 ... P61112 14729342
    604 1q3s:E (3.0) BS01 ADP 3.6.4.9 GO:0005524 ... P61112 14729342
    605 1q3s:F (3.0) BS01 ADP 3.6.4.9 GO:0005524 ... P61112 14729342
    606 1q3s:G (3.0) BS01 ADP 3.6.4.9 GO:0005524 ... P61112 14729342
    607 1q3s:H (3.0) BS01 ADP 3.6.4.9 GO:0005524 ... P61112 14729342
    608 1q8y:A (2.05) BS02 ADP 2.7.11.1 GO:0004672 ... Q03656 12911299
    609 1q9s:A (2.42) BS02 ADP 2.7.1.26 GO:0005515 ... Q969G6 14580199
    610 1qf9:A (1.7) BS02 ADP 2.7.4.14 GO:0000287 ... P20425 10426946
    611 1qqm:A (1.9) BS01 ADP 3.6.4.10 GO:0005524 ... P19120 10451379
    612 1qqn:A (1.9) BS01 ADP 3.6.4.10 GO:0005524 ... P19120 10451379
    613 1qqo:A (1.9) BS01 ADP 3.6.4.10 GO:0005524 ... P19120 10451379
    614 1qvi:A (2.54) BS02 ADP ? GO:0003774 ... P24733 14656445
    615 1r0y:A (2.55) BS01 ADP 5.6.1.6 GO:0005524 ... P26361 14685259
    616 1r0y:B (2.55) BS01 ADP 5.6.1.6 GO:0005524 ... P26361 14685259
    617 1r0y:C (2.55) BS01 ADP 5.6.1.6 GO:0005524 ... P26361 14685259
    618 1r0y:D (2.55) BS01 ADP 5.6.1.6 GO:0005524 ... P26361 14685259
    619 1r6b:X (2.25) BS02 ADP ? GO:0004176 ... P0ABH9 15037248
    620 1r6b:X (2.25) BS03 ADP ? GO:0004176 ... P0ABH9 15037248
    621 1r7r:A (3.6) BS01 ADP 3.6.4.6 GO:0000502 ... Q01853 14643202
    622 1rc8:A (2.75) BS03 ADP 2.7.1.78
    3.1.3.34
    GO:0005524 ... P06855 14754987
    623 1rdq:E (1.26) BS03 ADP 2.7.11.11 GO:0000122 ... P05132 14757059
    624 1rea:A (2.7) BS01 ADP ? GO:0000725 ... P0A7G6 1731253
    625 1rfu:A (2.8) BS02 ADP 2.7.1.35 GO:0005524 ... P82197 14722069
    626 1rfu:B (2.8) BS02 ADP 2.7.1.35 GO:0005524 ... P82197 14722069
    627 1rfu:C (2.8) BS02 ADP 2.7.1.35 GO:0005524 ... P82197 14722069
    628 1rfu:D (2.8) BS02 ADP 2.7.1.35 GO:0005524 ... P82197 14722069
    629 1rfu:E (2.8) BS02 ADP 2.7.1.35 GO:0005524 ... P82197 14722069
    630 1rfu:F (2.8) BS02 ADP 2.7.1.35 GO:0005524 ... P82197 14722069
    631 1rfu:G (2.8) BS02 ADP 2.7.1.35 GO:0005524 ... P82197 14722069
    632 1rfu:H (2.8) BS02 ADP 2.7.1.35 GO:0005524 ... P82197 14722069
    633 1rfv:A (2.8) BS01 ADP 2.7.1.35 GO:0005524 ... P82197 14722069
    634 1rfv:B (2.8) BS01 ADP 2.7.1.35 GO:0005524 ... P82197 14722069
    635 1rk2:A (2.25) BS04 ADP 2.7.1.15 GO:0004747 ... P0A9J6 10438599
    636 1rk2:B (2.25) BS04 ADP 2.7.1.15 GO:0004747 ... P0A9J6 10438599
    637 1rk2:C (2.25) BS04 ADP 2.7.1.15 GO:0004747 ... P0A9J6 10438599
    638 1rk2:D (2.25) BS04 ADP 2.7.1.15 GO:0004747 ... P0A9J6 10438599
    639 1rkd:A (1.84) BS02 ADP 2.7.1.15 GO:0004747 ... P0A9J6 9519409
    640 1rl9:A (1.45) BS01 ADP 2.7.3.3 GO:0003824 ... P51541 14978299
    641 1rpz:A (2.9) BS03 ADP 2.7.1.78
    3.1.3.34
    GO:0005524 ... P06855 14754987
    642 1rrc:A (2.46) BS03 ADP 2.7.1.78
    3.1.3.34
    GO:0005524 ... P06855 14754987
    643 1rzu:A (2.3) BS01 ADP 2.4.1.21 GO:0004373 ... P0A3F3 15272305
    644 1rzu:B (2.3) BS01 ADP 2.4.1.21 GO:0004373 ... P0A3F3 15272305
    645 1s3s:A (2.9) BS01 ADP 3.6.4.6 GO:0005524 ... Q01853 14988733
    646 1s3s:B (2.9) BS01 ADP 3.6.4.6 GO:0005524 ... Q01853 14988733
    647 1s3s:C (2.9) BS01 ADP 3.6.4.6 GO:0005524 ... Q01853 14988733
    648 1s3s:D (2.9) BS01 ADP 3.6.4.6 GO:0005524 ... Q01853 14988733
    649 1s3s:E (2.9) BS01 ADP 3.6.4.6 GO:0005524 ... Q01853 14988733
    650 1s3s:F (2.9) BS01 ADP 3.6.4.6 GO:0005524 ... Q01853 14988733
    651 1s3x:A (1.84) BS03 ADP ? GO:0005524 ... P0DMV8 9083109
    652 1s4e:A (2.9) BS02 ADP 2.7.1.6 GO:0000287 ... Q9HHB6 15003454
    653 1s4e:B (2.9) BS02 ADP 2.7.1.6 GO:0000287 ... Q9HHB6 15003454
    654 1s4e:C (2.9) BS02 ADP 2.7.1.6 GO:0000287 ... Q9HHB6 15003454
    655 1s4e:D (2.9) BS02 ADP 2.7.1.6 GO:0000287 ... Q9HHB6 15003454
    656 1s4e:E (2.9) BS02 ADP 2.7.1.6 GO:0000287 ... Q9HHB6 15003454
    657 1s4e:F (2.9) BS02 ADP 2.7.1.6 GO:0000287 ... Q9HHB6 15003454
    658 1s4e:G (2.9) BS02 ADP 2.7.1.6 GO:0000287 ... Q9HHB6 15003454
    659 1s4e:H (2.9) BS02 ADP 2.7.1.6 GO:0000287 ... Q9HHB6 15003454
    660 1s4e:I (2.9) BS02 ADP 2.7.1.6 GO:0000287 ... Q9HHB6 15003454
    661 1s5g:A (3.1) BS01 ADP ? GO:0003774 ... P24733 15184651
    662 1sd0:A (2.3) BS03 ADP 2.7.3.3 GO:0003824 ... P51541 15236576
    663 1sdm:A (2.3) BS01 ADP ? GO:0003777 ... Q41460 14988396
    664 1sq5:A (2.2) BS02 ADP 2.7.1.33 GO:0004594 ... P0A6I3 15136582
    665 1sq5:B (2.2) BS02 ADP 2.7.1.33 GO:0004594 ... P0A6I3 15136582
    666 1sq5:C (2.2) BS02 ADP 2.7.1.33 GO:0004594 ... P0A6I3 15136582
    667 1sq5:D (2.2) BS02 ADP 2.7.1.33 GO:0004594 ... P0A6I3 15136582
    668 1sqk:A (2.5) BS02 ADP 3.6.4.- GO:0000287 ... P68135 15163409
    669 1svl:A (1.95) BS02 ADP 3.6.4.- GO:0003677 ... P03070 15454080
    670 1svl:B (1.95) BS02 ADP 3.6.4.- GO:0003677 ... P03070 15454080
    671 1svl:C (1.95) BS02 ADP 3.6.4.- GO:0003677 ... P03070 15454080
    672 1svt:A (2.808) BS01 ADP 5.6.1.7 GO:0000287 ... P0A6F5 15313620
    673 1svt:B (2.808) BS01 ADP 5.6.1.7 GO:0000287 ... P0A6F5 15313620
    674 1svt:C (2.808) BS01 ADP 5.6.1.7 GO:0000287 ... P0A6F5 15313620
    675 1svt:D (2.808) BS01 ADP 5.6.1.7 GO:0000287 ... P0A6F5 15313620
    676 1svt:E (2.808) BS01 ADP 5.6.1.7 GO:0000287 ... P0A6F5 15313620
    677 1svt:F (2.808) BS01 ADP 5.6.1.7 GO:0000287 ... P0A6F5 15313620
    678 1svt:G (2.808) BS01 ADP 5.6.1.7 GO:0000287 ... P0A6F5 15313620
    679 1sx4:A (3.0) BS01 ADP 5.6.1.7 GO:0000287 ... P0A6F5 15313620
    680 1sx4:B (3.0) BS01 ADP 5.6.1.7 GO:0000287 ... P0A6F5 15313620
    681 1sx4:C (3.0) BS01 ADP 5.6.1.7 GO:0000287 ... P0A6F5 15313620
    682 1sx4:D (3.0) BS01 ADP 5.6.1.7 GO:0000287 ... P0A6F5 15313620
    683 1sx4:E (3.0) BS01 ADP 5.6.1.7 GO:0000287 ... P0A6F5 15313620
    684 1sx4:F (3.0) BS01 ADP 5.6.1.7 GO:0000287 ... P0A6F5 15313620
    685 1sx4:G (3.0) BS01 ADP 5.6.1.7 GO:0000287 ... P0A6F5 15313620
    686 1sxj:E (2.85) BS01 ADP ? GO:0000077 ... P38251 15201901
    687 1t36:A (2.1) BS05 ADP 6.3.4.16
    6.3.5.5
    GO:0000166 ... P00968 15322282
    688 1t36:A (2.1) BS06 ADP 6.3.4.16
    6.3.5.5
    GO:0000166 ... P00968 15322282
    689 1t36:C (2.1) BS05 ADP 6.3.4.16
    6.3.5.5
    GO:0000166 ... P00968 15322282
    690 1t36:C (2.1) BS06 ADP 6.3.4.16
    6.3.5.5
    GO:0000166 ... P00968 15322282
    691 1t36:E (2.1) BS05 ADP 6.3.4.16
    6.3.5.5
    GO:0000166 ... P00968 15322282
    692 1t36:E (2.1) BS06 ADP 6.3.4.16
    6.3.5.5
    GO:0000166 ... P00968 15322282
    693 1t36:G (2.1) BS05 ADP 6.3.4.16
    6.3.5.5
    GO:0000166 ... P00968 15322282
    694 1t36:G (2.1) BS06 ADP 6.3.4.16
    6.3.5.5
    GO:0000166 ... P00968 15322282
    695 1t3t:A (1.9) BS07 ADP 6.3.5.3 GO:0004642 ... P74881 15301531 PDBbind: -logKd/Ki=4.96, Ki=11uM
    696 1t5c:A (2.5) BS01 ADP ? GO:0003777 ... Q02224 15236970
    697 1t5c:B (2.5) BS01 ADP ? GO:0003777 ... Q02224 15236970
    698 1t5t:A (2.9) BS05 ADP 7.2.2.10 GO:0000166 ... P04191 15192230
    699 1t6x:A (2.29) BS01 ADP 2.7.1.26
    2.7.7.2
    GO:0003919 ... Q9WZW1 N/A
    700 1t6x:B (2.29) BS01 ADP 2.7.1.26
    2.7.7.2
    GO:0003919 ... Q9WZW1 N/A
    701 1t6y:A (2.8) BS01 ADP 2.7.1.26
    2.7.7.2
    GO:0003919 ... Q9WZW1 N/A
    702 1t6y:B (2.8) BS01 ADP 2.7.1.26
    2.7.7.2
    GO:0003919 ... Q9WZW1 N/A
    703 1tc6:A (1.87) BS01 ADP ? GO:0005524 ... P41148 15292259
    704 1tc6:B (1.87) BS01 ADP ? GO:0005524 ... P41148 15292259
    705 1tf2:A (2.9) BS01 ADP 7.4.2.8 GO:0005524 ... P28366 15256599
    706 1th8:A (2.4) BS01 ADP 2.7.11.1 GO:0004672 ... O32727 15236958
    707 1thn:A (2.5) BS01 ADP 2.7.11.1 GO:0004672 ... O32727 15236958
    708 1thn:C (2.5) BS01 ADP 2.7.11.1 GO:0004672 ... O32727 15236958
    709 1tuu:A (2.5) BS02 ADP 2.7.2.1 GO:0000287 ... P38502 15647264
    710 1tuy:A (3.0) BS02 ADP 2.7.2.1 GO:0000287 ... P38502 15647264
    711 1tuy:B (3.0) BS01 ADP 2.7.2.1 GO:0000287 ... P38502 15647264
    712 1ty8:A (2.1) BS01 ADP 3.1.3.84 GO:0005575 ... Q04299 N/A
    713 1tzd:A (2.2) BS01 ADP 2.7.1.127 GO:0016301 ... P17105 15350215
    714 1tzd:B (2.2) BS01 ADP 2.7.1.127 GO:0016301 ... P17105 15350215
    715 1u0j:A (2.1) BS01 ADP 3.6.4.12 GO:0019079 ... P03132 15310852
    716 1u2v:A (2.55) BS01 ADP ? GO:0003779 ... P61157 15505213
    717 1u2v:B (2.55) BS01 ADP ? GO:0003779 ... A7MB62 15505213
    718 1u3f:A (2.5) BS02 ADP 6.3.3.2 GO:0005524 ... P75430 15281135
    719 1u3f:B (2.5) BS02 ADP 6.3.3.2 GO:0005524 ... P75430 15281135
    720 1u3g:A (2.5) BS02 ADP 6.3.3.2 GO:0005524 ... P75430 15281135
    721 1u6r:A (1.65) BS01 ADP 2.7.3.2 GO:0003824 ... P00563 17327675
    722 1u6r:B (1.65) BS02 ADP 2.7.3.2 GO:0003824 ... P00563 17327675
    723 1u8a:A (2.15) BS01 ADP 2.7.1.71 GO:0000287 ... P9WPY3 15358538
    724 1ube:A (3.3) BS01 ADP ? GO:0003677 ... Q59560 12837805
    725 1uc9:A (2.38) BS01 ADP 6.3.2.43 GO:0003824 ... Q5SH23 12963379
    726 1uc9:B (2.38) BS01 ADP 6.3.2.43 GO:0003824 ... Q5SH23 12963379
    727 1ucn:A (2.0) BS03 ADP 2.7.4.6 GO:0000287 ... P15531 12972261 MOAD: Kd=6uM
    PDBbind: -logKd/Ki=5.22, Kd=6.0uM
    728 1ucn:B (2.0) BS02 ADP 2.7.4.6 GO:0000287 ... P15531 12972261 MOAD: Kd=6uM
    PDBbind: -logKd/Ki=5.22, Kd=6.0uM
    729 1ucn:C (2.0) BS02 ADP 2.7.4.6 GO:0000287 ... P15531 12972261 MOAD: Kd=6uM
    730 1uj2:A (1.8) BS02 ADP 2.7.1.48 GO:0004849 ... Q9BZX2 15130468
    731 1uj2:B (1.8) BS02 ADP 2.7.1.48 GO:0004849 ... Q9BZX2 15130468
    732 1uky:A (2.13) BS01 ADP 2.7.4.14 GO:0004017 ... P15700 7877173
    733 1uky:A (2.13) BS02 ADP 2.7.4.14 GO:0004017 ... P15700 7877173
    734 1ukz:A (1.9) BS01 ADP 2.7.4.14 GO:0004017 ... P15700 7877173
    735 1um8:A (2.6) BS01 ADP ? GO:0005524 ... O25926 14514695
    736 1uw1:A (1.94) BS01 ADP N/A N/A N/A 15024384 MOAD: Kd~100nM
    737 1v1a:A (2.1) BS02 ADP 2.7.1.45 GO:0000166 ... Q53W83 15210349
    738 1v1a:B (2.1) BS03 ADP 2.7.1.45 GO:0000166 ... Q53W83 15210349
    739 1v8j:A (3.24) BS01 ADP ? GO:0003777 ... Q922S8 14980225
    740 1v9o:A (2.0) BS01 ADP ? GO:0005524 ... P83820 15629661
    741 1v9o:A (2.0) BS02 ADP ? GO:0005524 ... P83820 15629661
    742 1v9o:B (2.0) BS01 ADP ? GO:0005524 ... P83820 15629661
    743 1v9o:B (2.0) BS02 ADP ? GO:0005524 ... P83820 15629661
    744 1v9o:C (2.0) BS01 ADP ? GO:0005524 ... P83820 15629661
    745 1v9o:C (2.0) BS02 ADP ? GO:0005524 ... P83820 15629661
    746 1va6:A (2.1) BS05 ADP 6.3.2.2 GO:0003824 ... P0A6W9 15477603
    747 1va6:B (2.1) BS05 ADP 6.3.2.2 GO:0003824 ... P0A6W9 15477603
    748 1vfx:A (2.55) BS01 ADP ? GO:0003777 ... P33173 15286375
    749 1vfz:A (2.24) BS01 ADP ? GO:0003777 ... P33173 15286375
    750 1vhl:A (1.65) BS01 ADP 2.7.1.24 GO:0004140 ... P0A6I9 16021622
    751 1vom:A (1.9) BS03 ADP ? GO:0003774 ... P08799 8611530
    752 1vrp:A (2.1) BS01 ADP 2.7.3.2 GO:0003824 ... P04414 12437342
    753 1vrp:B (2.1) BS02 ADP 2.7.3.2 GO:0003824 ... P04414 12437342
    754 1vtk:A (2.75) BS01 ADP 2.7.1.21 GO:0004797 ... P0DTH5 9336833
    755 1w0j:A (2.2) BS01 ADP 3.6.3.14 GO:0005515 ... P19483 15229653
    756 1w0j:B (2.2) BS01 ADP 3.6.3.14 GO:0005515 ... P19483 15229653
    757 1w0j:C (2.2) BS01 ADP 3.6.3.14 GO:0005515 ... P19483 15229653
    758 1w0j:D (2.2) BS01 ADP 7.1.2.2 GO:0005515 ... P00829 15229653
    759 1w0j:F (2.2) BS01 ADP 7.1.2.2 GO:0005515 ... P00829 15229653
    760 1w0k:A (2.85) BS01 ADP 3.6.3.14 GO:0005515 ... P19483 15229653
    761 1w0k:B (2.85) BS01 ADP 3.6.3.14 GO:0005515 ... P19483 15229653
    762 1w0k:C (2.85) BS01 ADP 3.6.3.14 GO:0005515 ... P19483 15229653
    763 1w0k:D (2.85) BS01 ADP 7.1.2.2 GO:0005515 ... P00829 15229653
    764 1w0k:F (2.85) BS01 ADP 7.1.2.2 GO:0005515 ... P00829 15229653
    765 1w2d:A (1.94) BS01 ADP 2.7.1.127 GO:0016301 ... P23677 15350214
    766 1w2d:B (1.94) BS01 ADP 2.7.1.127 GO:0016301 ... P23677 15350214
    767 1w44:A (2.0) BS01 ADP ? GO:0005524 ... Q94M05 15369673
    768 1w44:A (2.0) BS02 ADP ? GO:0005524 ... Q94M05 15369673
    769 1w44:B (2.0) BS01 ADP ? GO:0005524 ... Q94M05 15369673
    770 1w44:B (2.0) BS02 ADP ? GO:0005524 ... Q94M05 15369673
    771 1w44:C (2.0) BS01 ADP ? GO:0005524 ... Q94M05 15369673
    772 1w46:A (2.7) BS01 ADP ? GO:0005524 ... Q94M05 15369673
    773 1w46:A (2.7) BS02 ADP ? GO:0005524 ... Q94M05 15369673
    774 1w46:B (2.7) BS01 ADP ? GO:0005524 ... Q94M05 15369673
    775 1w46:B (2.7) BS02 ADP ? GO:0005524 ... Q94M05 15369673
    776 1w46:C (2.7) BS01 ADP ? GO:0005524 ... Q94M05 15369673
    777 1w47:A (2.5) BS01 ADP ? GO:0005524 ... Q94M05 15369673
    778 1w47:A (2.5) BS02 ADP ? GO:0005524 ... Q94M05 15369673
    779 1w47:B (2.5) BS01 ADP ? GO:0005524 ... Q94M05 15369673
    780 1w47:B (2.5) BS02 ADP ? GO:0005524 ... Q94M05 15369673
    781 1w47:C (2.5) BS01 ADP ? GO:0005524 ... Q94M05 15369673
    782 1w4b:A (2.3) BS01 ADP ? GO:0005524 ... Q94M05 15369673
    783 1w4b:A (2.3) BS02 ADP ? GO:0005524 ... Q94M05 15369673
    784 1w4b:B (2.3) BS01 ADP ? GO:0005524 ... Q94M05 15369673
    785 1w4b:B (2.3) BS02 ADP ? GO:0005524 ... Q94M05 15369673
    786 1w4b:C (2.3) BS01 ADP ? GO:0005524 ... Q94M05 15369673
    787 1w5s:A (2.4) BS01 ADP ? GO:0003677 ... Q9YFU8 15465044
    788 1w5s:B (2.4) BS01 ADP ? GO:0003677 ... Q9YFU8 15465044
    789 1w5t:C (2.4) BS01 ADP ? GO:0003677 ... Q9YFU8 15465044
    790 1w78:A (1.82) BS03 ADP 6.3.2.12
    6.3.2.17
    GO:0004326 ... P08192 15705579
    791 1w7i:A (3.0) BS01 ADP ? GO:0003774 ... Q02440 15510214
    792 1w7j:A (2.0) BS02 ADP ? GO:0003774 ... Q02440 15510214
    793 1w7k:A (2.1) BS01 ADP 6.3.2.12
    6.3.2.17
    GO:0004326 ... P08192 15705579
    794 1w9i:A (1.75) BS02 ADP 3.6.4.1 GO:0003774 ... P08799 N/A
    795 1w9j:A (2.0) BS02 ADP 3.6.4.1 GO:0003774 ... P08799 N/A
    796 1w9k:A (2.05) BS02 ADP 3.6.4.1 GO:0003774 ... P08799 N/A
    797 1w9l:A (1.95) BS02 ADP 3.6.4.1 GO:0003774 ... P08799 N/A
    798 1wb9:A (2.1) BS03 ADP ? GO:0000018 ... P23909 16407973
    799 1wbb:A (2.5) BS03 ADP ? GO:0000018 ... P23909 16407973
    800 1wbd:A (2.4) BS03 ADP ? GO:0000018 ... P23909 16407973

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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