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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 12079 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    5201 6g2j:O (3.3) BS01 ADP ? GO:0005739 ... Q99LC3 29915388
    5202 6g2v:A (1.903) BS01 ADP 3.6.4.6 GO:0005524 ... P55072 31701538
    5203 6g2w:A (2.678) BS01 ADP 3.6.4.6 GO:0005524 ... P55072 31701538
    5204 6g2x:A (2.078) BS03 ADP 3.6.4.6 GO:0005524 ... P55072 31701538
    5205 6g2y:A (2.153) BS01 ADP 3.6.4.6 GO:0005524 ... P55072 31701538
    5206 6g2z:A (1.923) BS01 ADP 3.6.4.6 GO:0005524 ... P55072 31701538
    5207 6g30:A (2.418) BS01 ADP 3.6.4.6 GO:0005524 ... P55072 31701538
    5208 6g3r:A (1.4) BS01 ADP ? GO:0005524 ... P0DMV8 29949628
    5209 6g3s:A (2.3) BS01 ADP ? GO:0005524 ... P0DMV8 29949628
    5210 6g6y:A (1.8) BS01 ADP ? GO:0003777 ... P52732 30031975 MOAD: ic50=0.74uM
    5211 6g6z:A (2.8) BS01 ADP ? GO:0003777 ... P52732 30031975
    5212 6g72:O (3.9) BS01 ADP ? GO:0005739 ... Q99LC3 29915388
    5213 6gcn:A (2.949) BS01 ADP 3.4.24.- GO:0004176 ... O67077 30118817
    5214 6gcn:B (2.949) BS01 ADP 3.4.24.- GO:0004176 ... O67077 30118817
    5215 6gcn:C (2.949) BS01 ADP 3.4.24.- GO:0004176 ... O67077 30118817
    5216 6gcn:D (2.949) BS01 ADP 3.4.24.- GO:0004176 ... O67077 30118817
    5217 6gco:A (3.323) BS01 ADP 3.4.24.- GO:0004176 ... O67077 30118817
    5218 6gco:B (3.323) BS01 ADP 3.4.24.- GO:0004176 ... O67077 30118817
    5219 6gej:M (3.6) BS03 ADP 3.6.4.12 GO:0000725 ... Q05471 30309918
    5220 6gej:R (3.6) BS01 ADP ? GO:0000785 ... Q12509 30309918
    5221 6gej:T (3.6) BS01 ADP 3.6.4.12 GO:0000492 ... Q03940 30309918
    5222 6gej:U (3.6) BS02 ADP 3.6.4.12 GO:0000492 ... Q12464 30309918
    5223 6gej:V (3.6) BS01 ADP 3.6.4.12 GO:0000492 ... Q03940 30309918
    5224 6gej:W (3.6) BS01 ADP 3.6.4.12 GO:0000492 ... Q12464 30309918
    5225 6gej:X (3.6) BS01 ADP 3.6.4.12 GO:0000492 ... Q03940 30309918
    5226 6gej:Y (3.6) BS01 ADP 3.6.4.12 GO:0000492 ... Q12464 30309918
    5227 6gen:M (3.6) BS03 ADP 3.6.4.12 GO:0000725 ... Q05471 30309918
    5228 6gen:R (3.6) BS01 ADP ? GO:0000785 ... Q12509 30309918
    5229 6gen:T (3.6) BS01 ADP 3.6.4.12 GO:0000492 ... Q03940 30309918
    5230 6gen:U (3.6) BS01 ADP 3.6.4.12 GO:0000492 ... Q12464 30309918
    5231 6gen:V (3.6) BS01 ADP 3.6.4.12 GO:0000492 ... Q03940 30309918
    5232 6gen:W (3.6) BS01 ADP 3.6.4.12 GO:0000492 ... Q12464 30309918
    5233 6gen:X (3.6) BS01 ADP 3.6.4.12 GO:0000492 ... Q03940 30309918
    5234 6gen:Y (3.6) BS01 ADP 3.6.4.12 GO:0000492 ... Q12464 30309918
    5235 6gfg:A (3.0) BS02 ADP 2.7.1.158 GO:0005524 ... Q93YN9 30160967
    5236 6gfg:B (3.0) BS02 ADP 2.7.1.158 GO:0005524 ... Q93YN9 30160967
    5237 6gkh:A (4.06) BS03 ADP 3.6.4.13 GO:0002376 ... Q8R5F7 30449722
    5238 6gne:A (2.55) BS04 ADP 2.4.1.21 GO:0004373 ... Q0WVX5 30123236
    5239 6gne:B (2.55) BS03 ADP 2.4.1.21 GO:0004373 ... Q0WVX5 30123236
    5240 6gnf:A (2.2) BS04 ADP 2.4.1.21
    2.4.1.242    		 GO:0000166 ... V5SNJ5 30123236
    5241 6gnf:B (2.2) BS01 ADP 2.4.1.21
    2.4.1.242    		 GO:0000166 ... V5SNJ5 30123236
    5242 6gnf:C (2.2) BS04 ADP 2.4.1.21
    2.4.1.242    		 GO:0000166 ... V5SNJ5 30123236
    5243 6gng:A (2.95) BS04 ADP ? GO:0000166 ... A8V967 30123236
    5244 6gng:B (2.95) BS04 ADP ? GO:0000166 ... A8V967 30123236
    5245 6gpp:A (1.51) BS01 ADP 3.6.4.10 GO:0005524 ... P07900 30248409
    5246 6gq6:A (2.25) BS01 ADP 3.6.4.10 GO:0005524 ... P07900 30248409
    5247 6gr2:A (2.49) BS02 ADP 2.7.1.6 GO:0004335 ... P51570 N/A
    5248 6gr2:B (2.49) BS02 ADP 2.7.1.6 GO:0004335 ... P51570 N/A
    5249 6gr2:C (2.49) BS02 ADP 2.7.1.6 GO:0004335 ... P51570 N/A
    5250 6gr2:D (2.49) BS02 ADP 2.7.1.6 GO:0004335 ... P51570 N/A
    5251 6gr2:E (2.49) BS02 ADP 2.7.1.6 GO:0004335 ... P51570 N/A
    5252 6gr2:F (2.49) BS02 ADP 2.7.1.6 GO:0004335 ... P51570 N/A
    5253 6gr2:G (2.49) BS02 ADP 2.7.1.6 GO:0004335 ... P51570 N/A
    5254 6gr2:H (2.49) BS02 ADP 2.7.1.6 GO:0004335 ... P51570 N/A
    5255 6gr5:A (1.34) BS01 ADP 3.6.4.10 GO:0005524 ... P07900 30248409
    5256 6grg:D (2.35) BS01 ADP ? GO:0005737 ... P23186 30661981
    5257 6hd0:A (3.728) BS01 ADP 3.6.4.6 GO:0005524 ... P55072 31648844
    5258 6hd0:B (3.728) BS01 ADP 3.6.4.6 GO:0005524 ... P55072 31648844
    5259 6hd0:C (3.728) BS01 ADP 3.6.4.6 GO:0005524 ... P55072 31648844
    5260 6hd0:T (3.728) BS01 ADP 3.6.4.6 GO:0005524 ... P55072 31648844
    5261 6hd0:U (3.728) BS01 ADP 3.6.4.6 GO:0005524 ... P55072 31648844
    5262 6hd0:U (3.728) BS02 ADP 3.6.4.6 GO:0005524 ... P55072 31648844
    5263 6hd0:V (3.728) BS01 ADP 3.6.4.6 GO:0005524 ... P55072 31648844
    5264 6hd3:A (2.8) BS01 ADP ? GO:0005524 ... P54609 31648844
    5265 6hd3:C (2.8) BS01 ADP ? GO:0005524 ... P54609 31648844
    5266 6he4:L (4.85) BS02 ADP ? GO:0005524 ... O28303 30559193
    5267 6he8:M (6.86) BS02 ADP ? GO:0000502 ... O28303 30559193
    5268 6he9:L (6.35) BS01 ADP ? GO:0000502 ... O28303 30559193
    5269 6hea:K (7.04) BS01 ADP ? GO:0000502 ... O28303 30559193
    5270 6hea:L (7.04) BS01 ADP ? GO:0000502 ... O28303 30559193
    5271 6hec:J (6.95) BS02 ADP ? GO:0000502 ... O28303 30559193
    5272 6hed:I (6.95) BS02 ADP ? GO:0000502 ... O28303 30559193
    5273 6heg:A (3.019) BS01 ADP 3.6.4.13 GO:0003676 ... P37024 30190128
    5274 6hkx:A (2.8) BS01 ADP ? GO:0003777 ... P52732 31488701
    5275 6hkx:B (2.8) BS01 ADP ? GO:0003777 ... P52732 31488701
    5276 6hky:A (2.75) BS01 ADP ? GO:0003777 ... P52732 31488701
    5277 6hky:B (2.75) BS01 ADP ? GO:0003777 ... P52732 31488701
    5278 6hky:C (2.75) BS01 ADP ? GO:0003777 ... P52732 31488701
    5279 6hpu:A (3.96) BS01 ADP 3.6.4.12 GO:0000723 ... Q9H611 30698796
    5280 6hpu:B (3.96) BS01 ADP 3.6.4.12 GO:0000723 ... Q9H611 30698796
    5281 6hqu:A (1.97) BS01 ADP N/A GO:0003677 ... N/A 34772801
    5282 6hqu:B (1.97) BS01 ADP N/A GO:0003677 ... N/A 34772801
    5283 6hqu:C (1.97) BS02 ADP N/A GO:0003677 ... N/A 34772801
    5284 6hqu:D (1.97) BS01 ADP N/A GO:0003677 ... N/A 34772801
    5285 6hqu:E (1.97) BS01 ADP N/A GO:0003677 ... N/A 34772801
    5286 6hqu:F (1.97) BS02 ADP N/A GO:0003677 ... N/A 34772801
    5287 6hqu:G (1.97) BS02 ADP N/A GO:0003677 ... N/A 34772801
    5288 6hqu:H (1.97) BS01 ADP N/A GO:0003677 ... N/A 34772801
    5289 6hsn:A (1.55) BS02 ADP 2.10.1.1
    2.7.7.75    		 GO:0006777 ... Q03555 30704910
    5290 6hso:A (1.95) BS03 ADP 2.10.1.1
    2.7.7.75    		 GO:0006777 ... Q03555 30704910
    5291 6ht7:A (3.7) BS01 ADP 5.6.1.7 GO:0001530 ... P10809 N/A
    5292 6ht7:B (3.7) BS01 ADP 5.6.1.7 GO:0001530 ... P10809 N/A
    5293 6ht7:C (3.7) BS01 ADP 5.6.1.7 GO:0001530 ... P10809 N/A
    5294 6ht7:D (3.7) BS01 ADP 5.6.1.7 GO:0001530 ... P10809 N/A
    5295 6ht7:E (3.7) BS01 ADP 5.6.1.7 GO:0001530 ... P10809 N/A
    5296 6ht7:F (3.7) BS01 ADP 5.6.1.7 GO:0001530 ... P10809 N/A
    5297 6ht7:G (3.7) BS01 ADP 5.6.1.7 GO:0001530 ... P10809 N/A
    5298 6ht7:H (3.7) BS01 ADP 5.6.1.7 GO:0001530 ... P10809 N/A
    5299 6ht7:I (3.7) BS01 ADP 5.6.1.7 GO:0001530 ... P10809 N/A
    5300 6ht7:J (3.7) BS01 ADP 5.6.1.7 GO:0001530 ... P10809 N/A
    5301 6ht7:K (3.7) BS01 ADP 5.6.1.7 GO:0001530 ... P10809 N/A
    5302 6ht7:L (3.7) BS01 ADP 5.6.1.7 GO:0001530 ... P10809 N/A
    5303 6ht7:M (3.7) BS01 ADP 5.6.1.7 GO:0001530 ... P10809 N/A
    5304 6ht7:N (3.7) BS01 ADP 5.6.1.7 GO:0001530 ... P10809 N/A
    5305 6hts:A (4.8) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y265 29643506
    5306 6hts:B (4.8) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y230 29643506
    5307 6hts:B (4.8) BS02 ADP 3.6.4.12 GO:0000492 ... Q9Y230 29643506
    5308 6hts:C (4.8) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y265 29643506
    5309 6hts:D (4.8) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y230 29643506
    5310 6hts:E (4.8) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y265 29643506
    5311 6hts:F (4.8) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y230 29643506
    5312 6hwl:B (2.148) BS01 ADP 2.7.1.8 GO:0000287 ... A0A1H7TQR5 31088917
    5313 6hxh:A (3.3) BS04 ADP 2.3.3.8 GO:0003824 ... P53396 30944476
    5314 6hxh:B (3.3) BS05 ADP 2.3.3.8 GO:0003824 ... P53396 30944476
    5315 6hxh:C (3.3) BS04 ADP 2.3.3.8 GO:0003824 ... P53396 30944476
    5316 6hxh:D (3.3) BS05 ADP 2.3.3.8 GO:0003824 ... P53396 30944476
    5317 6hxh:E (3.3) BS04 ADP 2.3.3.8 GO:0003824 ... P53396 30944476
    5318 6hxh:F (3.3) BS05 ADP 2.3.3.8 GO:0003824 ... P53396 30944476
    5319 6hxh:G (3.3) BS04 ADP 2.3.3.8 GO:0003824 ... P53396 30944476
    5320 6hxh:H (3.3) BS05 ADP 2.3.3.8 GO:0003824 ... P53396 30944476
    5321 6hyp:A (4.4) BS01 ADP ? GO:0000027 ... Q12019 30460895
    5322 6hyp:A (4.4) BS02 ADP ? GO:0000027 ... Q12019 30460895
    5323 6hys:A (2.6) BS01 ADP 3.6.4.13 GO:0000398 ... Q14562 31409651 PDBbind: -logKd/Ki=5.59, IC50=2.6uM
    5324 6hys:B (2.6) BS01 ADP 3.6.4.13 GO:0000398 ... Q14562 31409651
    5325 6hys:C (2.6) BS01 ADP 3.6.4.13 GO:0000398 ... Q14562 31409651
    5326 6hys:D (2.6) BS01 ADP 3.6.4.13 GO:0000398 ... Q14562 31409651
    5327 6hyt:A (2.33) BS01 ADP 3.6.4.13 GO:0000398 ... Q14562 31409651
    5328 6hyt:B (2.33) BS01 ADP 3.6.4.13 GO:0000398 ... Q14562 31409651
    5329 6hyt:C (2.33) BS01 ADP 3.6.4.13 GO:0000398 ... Q14562 31409651
    5330 6hyt:D (2.33) BS01 ADP 3.6.4.13 GO:0000398 ... Q14562 31409651
    5331 6i4d:A (1.24) BS02 ADP 3.6.4.- GO:0005200 ... Q8I4X0 31199804
    5332 6i4e:A (1.22) BS01 ADP 3.6.4.- GO:0005200 ... Q8I4X0 31199804
    5333 6i4f:A (1.5) BS02 ADP 3.6.4.- GO:0005200 ... Q8I4X0 31199804
    5334 6i4i:A (1.9) BS01 ADP 3.6.4.- GO:0005200 ... Q8I4X0 31199804
    5335 6i4j:A (1.5) BS01 ADP 3.6.4.- GO:0005200 ... Q8I4X0 31199804
    5336 6i4l:A (1.83) BS02 ADP 3.6.4.- GO:0005200 ... Q8I4X0 31199804
    5337 6i4m:A (1.873) BS01 ADP 3.6.4.- GO:0005524 ... Q4YU79 31199804
    5338 6i59:A (2.95) BS01 ADP 3.6.4.- GO:0004386 ... Q00416 31098019
    5339 6i5f:A (2.6) BS01 ADP ? GO:0000018 ... P23909 31372631
    5340 6i5f:B (2.6) BS01 ADP ? GO:0000018 ... P23909 31372631
    5341 6i7e:A (3.492) BS01 ADP ? GO:0000146 ... Q8IDR3 31337750
    5342 6ieg:A (3.55) BS01 ADP 3.6.4.13 GO:0000176 ... P42285 30842217
    5343 6ieg:B (3.55) BS01 ADP 3.6.4.13 GO:0000176 ... P42285 30842217
    5344 6ihk:B (2.23) BS01 ADP N/A N/A N/A 30677184
    5345 6iro:L (3.4) BS03 ADP 3.6.4.- GO:0000182 ... P38144 30872815
    5346 6itc:A (3.45) BS02 ADP 7.4.2.8 GO:0005524 ... P28366 31253804
    5347 6iud:A (2.506) BS02 ADP ? GO:0005524 ... O25759 30544248
    5348 6iud:B (2.506) BS03 ADP ? GO:0005524 ... O25759 30544248
    5349 6iud:B (2.506) BS04 ADP ? GO:0005524 ... O25759 30544248
    5350 6iud:C (2.506) BS03 ADP ? GO:0005524 ... O25759 30544248
    5351 6iud:C (2.506) BS04 ADP ? GO:0005524 ... O25759 30544248
    5352 6iud:D (2.506) BS03 ADP ? GO:0005524 ... O25759 30544248
    5353 6iud:D (2.506) BS04 ADP ? GO:0005524 ... O25759 30544248
    5354 6iug:A (3.9) BS01 ADP ? GO:0005524 ... B6TQ08 31628168
    5355 6iug:B (3.9) BS01 ADP ? GO:0005524 ... B6TQ08 31628168
    5356 6iug:C (3.9) BS01 ADP ? GO:0005524 ... B6TQ08 31628168
    5357 6iug:D (3.9) BS01 ADP ? GO:0005524 ... B6TQ08 31628168
    5358 6iug:E (3.9) BS01 ADP ? GO:0005524 ... B6TQ08 31628168
    5359 6ixw:A (3.253) BS01 ADP N/A N/A N/A 31253774
    5360 6ixw:B (3.253) BS01 ADP N/A N/A N/A 31253774
    5361 6ixw:C (3.253) BS01 ADP N/A N/A N/A 31253774
    5362 6iy2:O (3.47) BS03 ADP 3.6.4.- GO:0005524 ... P22082 30867599
    5363 6iy3:O (3.67) BS03 ADP 3.6.4.- GO:0005524 ... P22082 30867599
    5364 6izr:1 (4.7) BS01 ADP N/A N/A N/A 31253774
    5365 6izr:2 (4.7) BS01 ADP N/A N/A N/A 31253774
    5366 6izr:A (4.7) BS01 ADP N/A N/A N/A 31253774
    5367 6izr:B (4.7) BS01 ADP N/A N/A N/A 31253774
    5368 6izr:D (4.7) BS01 ADP N/A N/A N/A 31253774
    5369 6izr:E (4.7) BS01 ADP N/A N/A N/A 31253774
    5370 6izr:G (4.7) BS01 ADP N/A N/A N/A 31253774
    5371 6izr:H (4.7) BS01 ADP N/A N/A N/A 31253774
    5372 6izr:J (4.7) BS01 ADP N/A N/A N/A 31253774
    5373 6izr:K (4.7) BS01 ADP N/A N/A N/A 31253774
    5374 6izr:M (4.7) BS01 ADP N/A N/A N/A 31253774
    5375 6izr:N (4.7) BS01 ADP N/A N/A N/A 31253774
    5376 6izr:P (4.7) BS01 ADP N/A N/A N/A 31253774
    5377 6izr:Q (4.7) BS01 ADP N/A N/A N/A 31253774
    5378 6izr:b (4.7) BS01 ADP N/A N/A N/A 31253774
    5379 6izr:c (4.7) BS01 ADP N/A N/A N/A 31253774
    5380 6izr:e (4.7) BS01 ADP N/A N/A N/A 31253774
    5381 6izr:f (4.7) BS01 ADP N/A N/A N/A 31253774
    5382 6izr:h (4.7) BS01 ADP N/A N/A N/A 31253774
    5383 6izr:i (4.7) BS01 ADP N/A N/A N/A 31253774
    5384 6izr:k (4.7) BS01 ADP N/A N/A N/A 31253774
    5385 6izr:l (4.7) BS01 ADP N/A N/A N/A 31253774
    5386 6izr:n (4.7) BS01 ADP N/A N/A N/A 31253774
    5387 6izr:o (4.7) BS01 ADP N/A N/A N/A 31253774
    5388 6izr:q (4.7) BS01 ADP N/A N/A N/A 31253774
    5389 6izr:r (4.7) BS01 ADP N/A N/A N/A 31253774
    5390 6izr:t (4.7) BS01 ADP N/A N/A N/A 31253774
    5391 6izr:u (4.7) BS01 ADP N/A N/A N/A 31253774
    5392 6izr:w (4.7) BS01 ADP N/A N/A N/A 31253774
    5393 6izr:x (4.7) BS01 ADP N/A N/A N/A 31253774
    5394 6izv:0 (4.2) BS01 ADP N/A N/A N/A 31253774
    5395 6izv:1 (4.2) BS01 ADP N/A N/A N/A 31253774
    5396 6j5i:D (3.34) BS01 ADP 7.1.2.2 GO:0005524 ... K7GLT8 31197009
    5397 6j5i:F (3.34) BS01 ADP 7.1.2.2 GO:0005524 ... K7GLT8 31197009
    5398 6j5j:D (3.45) BS01 ADP 7.1.2.2 GO:0005524 ... K7GLT8 31197009
    5399 6j5j:F (3.45) BS01 ADP 7.1.2.2 GO:0005524 ... K7GLT8 31197009
    5400 6j5k:AD (6.2) BS01 ADP 7.1.2.2 GO:0005524 ... K7GLT8 31197009
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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