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BioLiP
Download all results in tab-seperated text for 12079 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    4801 6ap1:E (3.2) BS01 ADP ? GO:0005524 ... P52917
    Q9I747
    29165244
    4802 6av9:A (3.9) BS01 ADP 3.6.4.- GO:0000287 ... P68135 29259197
    4803 6av9:B (3.9) BS01 ADP 3.6.4.- GO:0000287 ... P68135 29259197
    4804 6av9:C (3.9) BS01 ADP 3.6.4.- GO:0000287 ... P68135 29259197
    4805 6avb:A (3.9) BS01 ADP 3.6.4.- GO:0000287 ... P68135 29259197
    4806 6avb:B (3.9) BS01 ADP 3.6.4.- GO:0000287 ... P68135 29259197
    4807 6avb:C (3.9) BS01 ADP 3.6.4.- GO:0000287 ... P68135 29259197
    4808 6avp:A (2.3) BS01 ADP 2.7.1.33 GO:0004594 ... Q2FWC7 N/A
    4809 6avp:B (2.3) BS01 ADP 2.7.1.33 GO:0004594 ... Q2FWC7 N/A
    4810 6avp:C (2.3) BS02 ADP 2.7.1.33 GO:0004594 ... Q2FWC7 N/A
    4811 6avp:D (2.3) BS02 ADP 2.7.1.33 GO:0004594 ... Q2FWC7 N/A
    4812 6awg:B (2.4) BS02 ADP 2.7.1.33 GO:0004594 ... Q2FWC7 N/A
    4813 6awg:D (2.4) BS02 ADP 2.7.1.33 GO:0004594 ... Q2FWC7 N/A
    4814 6awi:A (1.8) BS01 ADP 2.7.1.33 GO:0004594 ... Q2FWC7 N/A
    4815 6awi:B (1.8) BS02 ADP 2.7.1.33 GO:0004594 ... Q2FWC7 N/A
    4816 6awi:C (1.8) BS01 ADP 2.7.1.33 GO:0004594 ... Q2FWC7 N/A
    4817 6awi:D (1.8) BS02 ADP 2.7.1.33 GO:0004594 ... Q2FWC7 N/A
    4818 6awj:A (2.5) BS01 ADP 2.7.1.33 GO:0004594 ... Q2FWC7 N/A
    4819 6awj:B (2.5) BS03 ADP 2.7.1.33 GO:0004594 ... Q2FWC7 N/A
    4820 6awj:C (2.5) BS01 ADP 2.7.1.33 GO:0004594 ... Q2FWC7 N/A
    4821 6awj:D (2.5) BS03 ADP 2.7.1.33 GO:0004594 ... Q2FWC7 N/A
    4822 6az0:E (3.4) BS01 ADP ? GO:0004176 ... B3LL85 29097521
    4823 6azy:A (2.7) BS01 ADP ? GO:0005524 ... A0A452CSQ7 30595457
    4824 6azy:A (2.7) BS02 ADP ? GO:0005524 ... A0A452CSQ7 30595457
    4825 6b1i:A (2.3) BS01 ADP 3.6.4.10 GO:0005524 ... P11142 29300467
    4826 6b1i:B (2.3) BS01 ADP 3.6.4.10 GO:0005524 ... P11142 29300467
    4827 6b1n:A (1.8) BS01 ADP 3.6.4.10 GO:0005524 ... P11142 29300467
    4828 6b1n:B (1.8) BS01 ADP 3.6.4.10 GO:0005524 ... P11142 29300467
    4829 6b4i:E (3.619) BS01 ADP 3.6.4.13 GO:0003676 ... Q9UMR2 29899397
    4830 6b4i:F (3.619) BS01 ADP 3.6.4.13 GO:0003676 ... Q9UMR2 29899397
    4831 6b5d:A (3.1) BS01 ADP 5.6.1.1 GO:0005524 ... P34808 29752405
    4832 6b89:A (2.0) BS01 ADP 7.5.2.- GO:0005515 ... P0A9V1 29135241
    4833 6b89:B (2.0) BS02 ADP 7.5.2.- GO:0005515 ... P0A9V1 29135241
    4834 6b8b:A (1.95) BS02 ADP 7.5.2.- GO:0005515 ... P0A9V1 29135241
    4835 6bbm:A (4.1) BS01 ADP 3.6.4.12 GO:0003677 ... P0ACB0 30582519
    4836 6bbm:B (4.1) BS01 ADP 3.6.4.12 GO:0003677 ... P0ACB0 30582519
    4837 6bbm:C (4.1) BS01 ADP 3.6.4.12 GO:0003677 ... P0ACB0 30582519
    4838 6bbm:D (4.1) BS01 ADP 3.6.4.12 GO:0003677 ... P0ACB0 30582519
    4839 6bbm:E (4.1) BS01 ADP 3.6.4.12 GO:0003677 ... P0ACB0 30582519
    4840 6bbm:F (4.1) BS01 ADP 3.6.4.12 GO:0003677 ... P0ACB0 30582519
    4841 6bbm:F (4.1) BS02 ADP 3.6.4.12 GO:0003677 ... P0ACB0 30582519
    4842 6bbm:W (4.1) BS01 ADP ? GO:0006270 ... P03689 30582519
    4843 6bdn:A (1.5) BS02 ADP 2.7.11.1 GO:0004672 ... Q9H2K8 N/A
    4844 6bih:C (6.0) BS01 ADP 3.6.4.- GO:0000287 ... P68135 29038012
    4845 6blb:A (1.88) BS01 ADP 3.6.4.12 GO:0000400 ... Q51426 N/A
    4846 6bmf:A (3.2) BS02 ADP ? GO:0005524 ... P52917 29165244
    4847 6bmf:B (3.2) BS02 ADP ? GO:0005524 ... P52917 29165244
    4848 6bmf:C (3.2) BS02 ADP ? GO:0005524 ... P52917 29165244
    4849 6bmf:D (3.2) BS02 ADP ? GO:0005524 ... P52917 29165244
    4850 6bmf:E (3.2) BS01 ADP ? GO:0005524 ... P52917 29165244
    4851 6bno:A (5.5) BS02 ADP 3.6.4.- GO:0000287 ... P68135 29199952
    4852 6bno:B (5.5) BS02 ADP 3.6.4.- GO:0000287 ... P68135 29199952
    4853 6bno:C (5.5) BS01 ADP 3.6.4.- GO:0000287 ... P68135 29199952
    4854 6bno:D (5.5) BS01 ADP 3.6.4.- GO:0000287 ... P68135 29199952
    4855 6bno:E (5.5) BS02 ADP 3.6.4.- GO:0000287 ... P68135 29199952
    4856 6bno:F (5.5) BS02 ADP 3.6.4.- GO:0000287 ... P68135 29199952
    4857 6bno:G (5.5) BS02 ADP 3.6.4.- GO:0000287 ... P68135 29199952
    4858 6bno:H (5.5) BS02 ADP 3.6.4.- GO:0000287 ... P68135 29199952
    4859 6bnp:A (4.6) BS01 ADP 3.6.4.- GO:0000287 ... P68135 29199952
    4860 6bnp:B (4.6) BS02 ADP 3.6.4.- GO:0000287 ... P68135 29199952
    4861 6bnp:C (4.6) BS02 ADP 3.6.4.- GO:0000287 ... P68135 29199952
    4862 6bnp:D (4.6) BS01 ADP 3.6.4.- GO:0000287 ... P68135 29199952
    4863 6bnp:E (4.6) BS02 ADP 3.6.4.- GO:0000287 ... P68135 29199952
    4864 6bnp:F (4.6) BS02 ADP 3.6.4.- GO:0000287 ... P68135 29199952
    4865 6bnp:G (4.6) BS02 ADP 3.6.4.- GO:0000287 ... P68135 29199952
    4866 6bnp:H (4.6) BS02 ADP 3.6.4.- GO:0000287 ... P68135 29199952
    4867 6bnq:A (5.5) BS02 ADP 3.6.4.- GO:0000287 ... P68135 29199952
    4868 6bnq:B (5.5) BS02 ADP 3.6.4.- GO:0000287 ... P68135 29199952
    4869 6bnq:C (5.5) BS02 ADP 3.6.4.- GO:0000287 ... P68135 29199952
    4870 6bnq:D (5.5) BS02 ADP 3.6.4.- GO:0000287 ... P68135 29199952
    4871 6bnq:E (5.5) BS02 ADP 3.6.4.- GO:0000287 ... P68135 29199952
    4872 6bnq:F (5.5) BS02 ADP 3.6.4.- GO:0000287 ... P68135 29199952
    4873 6bnq:G (5.5) BS02 ADP 3.6.4.- GO:0000287 ... P68135 29199952
    4874 6bnq:H (5.5) BS02 ADP 3.6.4.- GO:0000287 ... P68135 29199952
    4875 6bs3:A (2.3) BS01 ADP ? GO:0005524 ... P9WKX5 31036728 MOAD: Kd=1.5uM
    PDBbind: -logKd/Ki=5.82, Kd=1.5uM
    4876 6bs3:B (2.3) BS01 ADP N/A GO:0005524 ... N/A 31036728 MOAD: Kd=1.5uM
    PDBbind: -logKd/Ki=5.82, Kd=1.5uM
    4877 6bs4:B (2.5) BS01 ADP N/A GO:0005524 ... N/A 31036728
    4878 6bzr:A (2.79999) BS01 ADP 7.6.2.-
    7.6.2.3
    GO:0005524 ... O95255 N/A
    4879 6bzr:B (2.79999) BS01 ADP 7.6.2.-
    7.6.2.3
    GO:0005524 ... O95255 N/A
    4880 6c1d:A (3.2) BS01 ADP 3.6.4.- GO:0000287 ... P68135 29358376
    4881 6c1d:B (3.2) BS01 ADP 3.6.4.- GO:0000287 ... P68135 29358376
    4882 6c1d:C (3.2) BS02 ADP 3.6.4.- GO:0000287 ... P68135 29358376
    4883 6c1d:D (3.2) BS02 ADP 3.6.4.- GO:0000287 ... P68135 29358376
    4884 6c1d:E (3.2) BS01 ADP 3.6.4.- GO:0000287 ... P68135 29358376
    4885 6c1d:P (3.2) BS01 ADP ? GO:0003774 ... Q05096 29358376
    4886 6c1g:A (3.8) BS01 ADP 3.6.4.- GO:0000287 ... P68135 29358376
    4887 6c1g:B (3.8) BS01 ADP 3.6.4.- GO:0000287 ... P68135 29358376
    4888 6c1g:C (3.8) BS01 ADP 3.6.4.- GO:0000287 ... P68135 29358376
    4889 6c1g:D (3.8) BS01 ADP 3.6.4.- GO:0000287 ... P68135 29358376
    4890 6c1g:E (3.8) BS01 ADP 3.6.4.- GO:0000287 ... P68135 29358376
    4891 6c1g:P (3.8) BS01 ADP ? GO:0003774 ... Q05096 29358376
    4892 6c1h:A (3.9) BS01 ADP 3.6.4.- GO:0000287 ... P68135 29358376
    4893 6c1h:B (3.9) BS01 ADP 3.6.4.- GO:0000287 ... P68135 29358376
    4894 6c1h:C (3.9) BS01 ADP 3.6.4.- GO:0000287 ... P68135 29358376
    4895 6c1h:D (3.9) BS01 ADP 3.6.4.- GO:0000287 ... P68135 29358376
    4896 6c1h:E (3.9) BS01 ADP 3.6.4.- GO:0000287 ... P68135 29358376
    4897 6c3o:E (3.9) BS01 ADP ? GO:0001508 ... Q09428 29286281
    4898 6c3o:F (3.9) BS01 ADP ? GO:0001508 ... Q09428 29286281
    4899 6c3o:G (3.9) BS01 ADP ? GO:0001508 ... Q09428 29286281
    4900 6c3o:H (3.9) BS01 ADP ? GO:0001508 ... Q09428 29286281
    4901 6c3p:E (5.6) BS01 ADP ? GO:0001508 ... Q09428 29286281
    4902 6c3p:F (5.6) BS01 ADP ? GO:0001508 ... Q09428 29286281
    4903 6c3p:G (5.6) BS01 ADP ? GO:0001508 ... Q09428 29286281
    4904 6c3p:H (5.6) BS01 ADP ? GO:0001508 ... Q09428 29286281
    4905 6c6b:A (2.0) BS01 ADP 2.7.1.25 GO:0000103 ... J9VMZ3 N/A
    4906 6c6b:B (2.0) BS01 ADP 2.7.1.25 GO:0000103 ... J9VMZ3 N/A
    4907 6c6b:C (2.0) BS01 ADP 2.7.1.25 GO:0000103 ... J9VMZ3 N/A
    4908 6c6b:D (2.0) BS01 ADP 2.7.1.25 GO:0000103 ... J9VMZ3 N/A
    4909 6c6b:E (2.0) BS01 ADP 2.7.1.25 GO:0000103 ... J9VMZ3 N/A
    4910 6c6b:F (2.0) BS01 ADP 2.7.1.25 GO:0000103 ... J9VMZ3 N/A
    4911 6c7y:A (2.499) BS01 ADP 2.7.10.2 GO:0004672 ... P23458 29674694
    4912 6c8z:A (2.86) BS01 ADP N/A GO:0000287 ... N/A 29997580
    4913 6c90:A (2.2) BS01 ADP 3.6.4.13 GO:0003676 ... P42285 29844170
    4914 6cib:A (2.05) BS01 ADP ? GO:0000166 ... Q8TZ25 29507203
    4915 6cib:B (2.05) BS01 ADP ? GO:0000166 ... Q8TZ25 29507203
    4916 6cib:C (2.05) BS01 ADP ? GO:0000166 ... Q8TZ25 29507203
    4917 6cib:D (2.05) BS01 ADP ? GO:0000166 ... Q8TZ25 29507203
    4918 6cib:E (2.05) BS01 ADP ? GO:0000166 ... Q8TZ25 29507203
    4919 6cib:F (2.05) BS01 ADP ? GO:0000166 ... Q8TZ25 29507203
    4920 6cjj:A (1.74) BS01 ADP ? GO:0005524 ... P46598 30679438 PDBbind: -logKd/Ki=3.90, Kd=125uM
    4921 6cmz:B (2.3) BS02 ADP 1.8.1.4 GO:0000166 ... B4EEF2 N/A
    4922 6cmz:C (2.3) BS02 ADP 1.8.1.4 GO:0000166 ... B4EEF2 N/A
    4923 6cmz:D (2.3) BS02 ADP 1.8.1.4 GO:0000166 ... B4EEF2 N/A
    4924 6cp3:D (3.8) BS01 ADP 7.1.2.2 GO:0005515 ... P00830 29650704
    4925 6cp3:F (3.8) BS01 ADP 7.1.2.2 GO:0005515 ... P00830 29650704
    4926 6cp6:C (3.6) BS02 ADP ? GO:0005524 ... P07251 29650704
    4927 6cp6:D (3.6) BS01 ADP 7.1.2.2 GO:0005515 ... P00830 29650704
    4928 6cp6:F (3.6) BS01 ADP 7.1.2.2 GO:0005515 ... P00830 29650704
    4929 6czd:A (2.4) BS02 ADP 6.3.3.3 GO:0000287 ... P9WPQ5 30289406 PDBbind: -logKd/Ki=3.85, Ki=0.14mM
    4930 6czd:B (2.4) BS02 ADP 6.3.3.3 GO:0000287 ... P9WPQ5 30289406 PDBbind: -logKd/Ki=3.85, Ki=0.14mM
    4931 6czd:C (2.4) BS02 ADP 6.3.3.3 GO:0000287 ... P9WPQ5 30289406
    4932 6czd:D (2.4) BS02 ADP 6.3.3.3 GO:0000287 ... P9WPQ5 30289406
    4933 6d00:1 (4.0) BS01 ADP ? GO:0005524 ... A0A452CSQ7 30595457
    4934 6d00:1 (4.0) BS02 ADP ? GO:0005524 ... A0A452CSQ7 30595457
    4935 6d00:2 (4.0) BS01 ADP ? GO:0005524 ... A0A452CSQ7 30595457
    4936 6d00:2 (4.0) BS02 ADP ? GO:0005524 ... A0A452CSQ7 30595457
    4937 6d00:3 (4.0) BS01 ADP ? GO:0005524 ... A0A452CSQ7 30595457
    4938 6d00:3 (4.0) BS02 ADP ? GO:0005524 ... A0A452CSQ7 30595457
    4939 6d00:4 (4.0) BS01 ADP ? GO:0005524 ... A0A452CSQ7 30595457
    4940 6d00:4 (4.0) BS02 ADP ? GO:0005524 ... A0A452CSQ7 30595457
    4941 6d00:5 (4.0) BS01 ADP ? GO:0005524 ... A0A452CSQ7 30595457
    4942 6d00:5 (4.0) BS02 ADP ? GO:0005524 ... A0A452CSQ7 30595457
    4943 6d00:6 (4.0) BS01 ADP ? GO:0005524 ... A0A452CSQ7 30595457
    4944 6d00:6 (4.0) BS02 ADP ? GO:0005524 ... A0A452CSQ7 30595457
    4945 6d3k:A (2.6) BS01 ADP 2.7.10.2
    2.7.11.1
    GO:0004672 ... P19525 31246429
    4946 6d3k:B (2.6) BS01 ADP 2.7.10.2
    2.7.11.1
    GO:0004672 ... P19525 31246429
    4947 6d3k:C (2.6) BS01 ADP 2.7.10.2
    2.7.11.1
    GO:0004672 ... P19525 31246429
    4948 6d8c:H (3.54) BS03 ADP 3.6.4.- GO:0001725 ... P68139 30224736
    4949 6d8c:J (3.54) BS02 ADP 3.6.4.- GO:0001725 ... P68139 30224736
    4950 6d8c:K (3.54) BS02 ADP 3.6.4.- GO:0001725 ... P68139 30224736
    4951 6d8c:L (3.54) BS03 ADP 3.6.4.- GO:0001725 ... P68139 30224736
    4952 6d8c:M (3.54) BS01 ADP 3.6.4.- GO:0001725 ... P68139 30224736
    4953 6de6:A (2.1) BS01 ADP ? GO:0000166 ... Q60I59 37146865
    4954 6de6:B (2.1) BS01 ADP ? GO:0000166 ... Q60I59 37146865
    4955 6dhk:A (3.5) BS01 ADP 1.4.1.3 GO:0006520 ... P00366 12653548
    4956 6dhk:A (3.5) BS02 ADP 1.4.1.3 GO:0006520 ... P00366 12653548
    4957 6dhk:B (3.5) BS01 ADP 1.4.1.3 GO:0006520 ... P00366 12653548
    4958 6dhk:B (3.5) BS02 ADP 1.4.1.3 GO:0006520 ... P00366 12653548
    4959 6dhk:C (3.5) BS01 ADP 1.4.1.3 GO:0006520 ... P00366 12653548
    4960 6dhk:C (3.5) BS02 ADP 1.4.1.3 GO:0006520 ... P00366 12653548
    4961 6dhk:D (3.5) BS01 ADP 1.4.1.3 GO:0006520 ... P00366 12653548
    4962 6dhk:D (3.5) BS02 ADP 1.4.1.3 GO:0006520 ... P00366 12653548
    4963 6dhk:E (3.5) BS01 ADP 1.4.1.3 GO:0006520 ... P00366 12653548
    4964 6dhk:E (3.5) BS02 ADP 1.4.1.3 GO:0006520 ... P00366 12653548
    4965 6dhk:F (3.5) BS01 ADP 1.4.1.3 GO:0006520 ... P00366 12653548
    4966 6dhk:F (3.5) BS02 ADP 1.4.1.3 GO:0006520 ... P00366 12653548
    4967 6dhk:G (3.5) BS01 ADP 1.4.1.3 GO:0006520 ... P00366 12653548
    4968 6dhk:G (3.5) BS02 ADP 1.4.1.3 GO:0006520 ... P00366 12653548
    4969 6dhk:H (3.5) BS01 ADP 1.4.1.3 GO:0006520 ... P00366 12653548
    4970 6dhk:H (3.5) BS02 ADP 1.4.1.3 GO:0006520 ... P00366 12653548
    4971 6dhk:I (3.5) BS01 ADP 1.4.1.3 GO:0006520 ... P00366 12653548
    4972 6dhk:I (3.5) BS02 ADP 1.4.1.3 GO:0006520 ... P00366 12653548
    4973 6dhk:J (3.5) BS01 ADP 1.4.1.3 GO:0006520 ... P00366 12653548
    4974 6dhk:J (3.5) BS02 ADP 1.4.1.3 GO:0006520 ... P00366 12653548
    4975 6dhk:K (3.5) BS01 ADP 1.4.1.3 GO:0006520 ... P00366 12653548
    4976 6dhk:K (3.5) BS02 ADP 1.4.1.3 GO:0006520 ... P00366 12653548
    4977 6dhk:L (3.5) BS01 ADP 1.4.1.3 GO:0006520 ... P00366 12653548
    4978 6dhk:L (3.5) BS02 ADP 1.4.1.3 GO:0006520 ... P00366 12653548
    4979 6djn:A (3.1) BS01 ADP 3.6.4.- GO:0001725 ... P68139 30760599
    4980 6djn:B (3.1) BS01 ADP 3.6.4.- GO:0001725 ... P68139 30760599
    4981 6djn:C (3.1) BS01 ADP 3.6.4.- GO:0001725 ... P68139 30760599
    4982 6djn:D (3.1) BS01 ADP 3.6.4.- GO:0001725 ... P68139 30760599
    4983 6djo:A (3.6) BS01 ADP 3.6.4.- GO:0001725 ... P68139 30760599
    4984 6djo:B (3.6) BS01 ADP 3.6.4.- GO:0001725 ... P68139 30760599
    4985 6djo:C (3.6) BS01 ADP 3.6.4.- GO:0001725 ... P68139 30760599
    4986 6djo:D (3.6) BS01 ADP 3.6.4.- GO:0001725 ... P68139 30760599
    4987 6dju:E (3.8) BS03 ADP ? GO:0005524 ... P9WPD1 30257943
    4988 6dju:F (3.8) BS02 ADP ? GO:0005524 ... P9WPD1 30257943
    4989 6djv:E (3.9) BS02 ADP ? GO:0005524 ... P9WPD1 30257943
    4990 6djv:E (3.9) BS03 ADP ? GO:0005524 ... P9WPD1 30257943
    4991 6due:A (2.6) BS01 ADP ? GO:0000146 ... S7W634 30348763
    4992 6duq:A (3.7) BS02 ADP 3.6.4.- GO:0003676 ... P0AG30 30122535
    4993 6duq:A (3.7) BS04 ADP 3.6.4.- GO:0003676 ... P0AG30 30122535
    4994 6duq:B (3.7) BS02 ADP 3.6.4.- GO:0003676 ... P0AG30 30122535
    4995 6duq:B (3.7) BS04 ADP 3.6.4.- GO:0003676 ... P0AG30 30122535
    4996 6duq:C (3.7) BS01 ADP 3.6.4.- GO:0003676 ... P0AG30 30122535
    4997 6duq:C (3.7) BS03 ADP 3.6.4.- GO:0003676 ... P0AG30 30122535
    4998 6duq:D (3.7) BS01 ADP 3.6.4.- GO:0003676 ... P0AG30 30122535
    4999 6duq:D (3.7) BS03 ADP 3.6.4.- GO:0003676 ... P0AG30 30122535
    5000 6duq:E (3.7) BS02 ADP 3.6.4.- GO:0003676 ... P0AG30 30122535

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218