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BioLiP
Download all results in tab-seperated text for 12079 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    4401 5n69:B (2.45) BS01 ADP ? GO:0003774 ... Q9BE39 28775348
    4402 5n6a:A (3.1) BS01 ADP ? GO:0003774 ... Q9BE39 28775348
    4403 5nbd:A (3.9) BS01 ADP 7.5.2.5 GO:0005524 ... Q0P9C4 28422165
    4404 5nbd:B (3.9) BS01 ADP 7.5.2.5 GO:0005524 ... Q0P9C4 28422165
    4405 5nd2:C (5.8) BS01 ADP ? GO:0003777 ... P97329 28826477
    4406 5nd4:C (4.4) BS01 ADP ? GO:0003777 ... P97329 28826477
    4407 5nog:A (11.0) BS01 ADP 3.6.4.- GO:0001725 ... P68137 28607071
    4408 5nog:B (11.0) BS01 ADP 3.6.4.- GO:0001725 ... P68137 28607071
    4409 5nog:C (11.0) BS01 ADP 3.6.4.- GO:0001725 ... P68137 28607071
    4410 5nog:D (11.0) BS01 ADP 3.6.4.- GO:0001725 ... P68137 28607071
    4411 5nog:E (11.0) BS01 ADP 3.6.4.- GO:0001725 ... P68137 28607071
    4412 5noj:A (11.0) BS01 ADP 3.6.4.- GO:0001725 ... P68137 28607071
    4413 5noj:B (11.0) BS01 ADP 3.6.4.- GO:0001725 ... P68137 28607071
    4414 5noj:C (11.0) BS01 ADP 3.6.4.- GO:0001725 ... P68137 28607071
    4415 5noj:D (11.0) BS01 ADP 3.6.4.- GO:0001725 ... P68137 28607071
    4416 5noj:E (11.0) BS01 ADP 3.6.4.- GO:0001725 ... P68137 28607071
    4417 5nol:A (8.0) BS01 ADP 3.6.4.- GO:0001725 ... P68137 28607071
    4418 5nol:B (8.0) BS01 ADP 3.6.4.- GO:0001725 ... P68137 28607071
    4419 5nol:C (8.0) BS01 ADP 3.6.4.- GO:0001725 ... P68137 28607071
    4420 5nol:D (8.0) BS01 ADP 3.6.4.- GO:0001725 ... P68137 28607071
    4421 5nol:E (8.0) BS01 ADP 3.6.4.- GO:0001725 ... P68137 28607071
    4422 5np9:A (2.0) BS01 ADP ? GO:0002949 ... O05515 28890133
    4423 5nug:A (3.8) BS01 ADP ? GO:0003723 ... Q14204 28602352
    4424 5nug:A (3.8) BS04 ADP ? GO:0003723 ... Q14204 28602352
    4425 5nug:A (3.8) BS05 ADP ? GO:0003723 ... Q14204 28602352
    4426 5nug:B (3.8) BS01 ADP ? GO:0003723 ... Q14204 28602352
    4427 5nug:B (3.8) BS04 ADP ? GO:0003723 ... Q14204 28602352
    4428 5nug:B (3.8) BS05 ADP ? GO:0003723 ... Q14204 28602352
    4429 5o2l:A (2.2) BS01 ADP ? GO:0003774 ... Q29122 29844196
    4430 5o6b:A (2.029) BS02 ADP 3.6.4.12 GO:0000723 ... P07271 29202194
    4431 5o6b:B (2.029) BS02 ADP 3.6.4.12 GO:0000723 ... P07271 29202194
    4432 5o6e:A (3.345) BS03 ADP 3.6.4.12 GO:0000723 ... P07271 29202194
    4433 5o6e:B (3.345) BS02 ADP 3.6.4.12 GO:0000723 ... P07271 29202194
    4434 5o7d:A (1.84) BS01 ADP 2.7.2.3 GO:0004618 ... P00558 29995887
    4435 5o8i:B (1.27) BS01 ADP 3.4.22.-
    3.9.1.-
    GO:0000118 ... P49773 N/A
    4436 5o9g:W (4.8) BS03 ADP 3.6.4.- GO:0000123 ... P32657 29019976
    4437 5oaf:A (4.06) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y265 29323271
    4438 5oaf:B (4.06) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y230 29323271
    4439 5oaf:B (4.06) BS02 ADP 3.6.4.12 GO:0000492 ... Q9Y230 29323271
    4440 5oaf:C (4.06) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y265 29323271
    4441 5oaf:D (4.06) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y230 29323271
    4442 5oaf:E (4.06) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y265 29323271
    4443 5oaf:F (4.06) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y230 29323271
    4444 5obv:A (2.49) BS01 ADP ? GO:0005524 ... P47547 29520883
    4445 5obw:A (1.4) BS01 ADP ? GO:0005524 ... P47547 29520883
    4446 5och:A (3.4) BS01 ADP ? GO:0005524 ... Q9NUT2 N/A
    4447 5och:B (3.4) BS01 ADP ? GO:0005524 ... Q9NUT2 N/A
    4448 5och:C (3.4) BS01 ADP ? GO:0005524 ... Q9NUT2 N/A
    4449 5och:D (3.4) BS01 ADP ? GO:0005524 ... Q9NUT2 N/A
    4450 5och:E (3.4) BS01 ADP ? GO:0005524 ... Q9NUT2 N/A
    4451 5och:F (3.4) BS01 ADP ? GO:0005524 ... Q9NUT2 N/A
    4452 5och:G (3.4) BS01 ADP ? GO:0005524 ... Q9NUT2 N/A
    4453 5och:H (3.4) BS01 ADP ? GO:0005524 ... Q9NUT2 N/A
    4454 5odt:A (2.021) BS01 ADP 2.7.11.1 GO:0004672 ... O14965 29510984
    4455 5oeb:B (3.1) BS01 ADP ? GO:0000166 ... E5DV50 29069443
    4456 5oes:A (2.48) BS01 ADP 6.3.2.3 GO:0000287 ... M1CSC4 29641602
    4457 5oes:B (2.48) BS01 ADP 6.3.2.3 GO:0000287 ... M1CSC4 29641602
    4458 5oes:C (2.48) BS01 ADP 6.3.2.3 GO:0000287 ... M1CSC4 29641602
    4459 5oes:D (2.48) BS01 ADP 6.3.2.3 GO:0000287 ... M1CSC4 29641602
    4460 5oes:E (2.48) BS01 ADP 6.3.2.3 GO:0000287 ... M1CSC4 29641602
    4461 5oes:F (2.48) BS01 ADP 6.3.2.3 GO:0000287 ... M1CSC4 29641602
    4462 5oeu:A (2.57) BS01 ADP ? GO:0004363 ... A0A183CD52 29641602
    4463 5oeu:C (2.57) BS01 ADP ? GO:0004363 ... A0A183CD52 29641602
    4464 5ofr:A (3.4) BS01 ADP ? GO:0005524 ... Q9X2W0 28864543
    4465 5ofr:A (3.4) BS03 ADP ? GO:0005524 ... Q9X2W0 28864543
    4466 5ofr:B (3.4) BS01 ADP ? GO:0005524 ... Q9X2W0 28864543
    4467 5ofr:B (3.4) BS02 ADP ? GO:0005524 ... Q9X2W0 28864543
    4468 5ogw:A (3.8) BS01 ADP 3.6.4.- GO:0005200 ... Q8I4X0 28923924
    4469 5ogw:B (3.8) BS01 ADP 3.6.4.- GO:0005200 ... Q8I4X0 28923924
    4470 5ogw:C (3.8) BS01 ADP 3.6.4.- GO:0005200 ... Q8I4X0 28923924
    4471 5ogw:D (3.8) BS02 ADP 3.6.4.- GO:0005200 ... Q8I4X0 28923924
    4472 5ogw:E (3.8) BS02 ADP 3.6.4.- GO:0005200 ... Q8I4X0 28923924
    4473 5onv:A (4.1) BS01 ADP 3.6.4.- GO:0000287 ... P68135 29867215
    4474 5onv:B (4.1) BS01 ADP 3.6.4.- GO:0000287 ... P68135 29867215
    4475 5onv:C (4.1) BS01 ADP 3.6.4.- GO:0000287 ... P68135 29867215
    4476 5onv:D (4.1) BS01 ADP 3.6.4.- GO:0000287 ... P68135 29867215
    4477 5onv:E (4.1) BS01 ADP 3.6.4.- GO:0000287 ... P68135 29867215
    4478 5ooc:A (3.6) BS01 ADP 3.6.4.- GO:0000287 ... P68135 29867215
    4479 5ooc:B (3.6) BS02 ADP 3.6.4.- GO:0000287 ... P68135 29867215
    4480 5ooc:C (3.6) BS02 ADP 3.6.4.- GO:0000287 ... P68135 29867215
    4481 5ooc:D (3.6) BS02 ADP 3.6.4.- GO:0000287 ... P68135 29867215
    4482 5ooc:E (3.6) BS02 ADP 3.6.4.- GO:0000287 ... P68135 29867215
    4483 5ood:A (3.7) BS01 ADP 3.6.4.- GO:0000287 ... P68135 29867215
    4484 5ood:B (3.7) BS02 ADP 3.6.4.- GO:0000287 ... P68135 29867215
    4485 5ood:C (3.7) BS02 ADP 3.6.4.- GO:0000287 ... P68135 29867215
    4486 5ood:D (3.7) BS02 ADP 3.6.4.- GO:0000287 ... P68135 29867215
    4487 5ood:E (3.7) BS02 ADP 3.6.4.- GO:0000287 ... P68135 29867215
    4488 5oof:A (3.4) BS01 ADP 3.6.4.- GO:0000287 ... P68135 29867215
    4489 5oof:B (3.4) BS01 ADP 3.6.4.- GO:0000287 ... P68135 29867215
    4490 5oof:C (3.4) BS01 ADP 3.6.4.- GO:0000287 ... P68135 29867215
    4491 5oof:D (3.4) BS01 ADP 3.6.4.- GO:0000287 ... P68135 29867215
    4492 5oof:E (3.4) BS01 ADP 3.6.4.- GO:0000287 ... P68135 29867215
    4493 5opx:A (3.64) BS01 ADP 5.6.1.7 GO:0000287 ... P0A6F5 29336887
    4494 5opx:B (3.64) BS01 ADP 5.6.1.7 GO:0000287 ... P0A6F5 29336887
    4495 5opx:C (3.64) BS01 ADP 5.6.1.7 GO:0000287 ... P0A6F5 29336887
    4496 5opx:D (3.64) BS01 ADP 5.6.1.7 GO:0000287 ... P0A6F5 29336887
    4497 5opx:E (3.64) BS01 ADP 5.6.1.7 GO:0000287 ... P0A6F5 29336887
    4498 5opx:F (3.64) BS01 ADP 5.6.1.7 GO:0000287 ... P0A6F5 29336887
    4499 5opx:G (3.64) BS01 ADP 5.6.1.7 GO:0000287 ... P0A6F5 29336887
    4500 5opx:H (3.64) BS01 ADP 5.6.1.7 GO:0000287 ... P0A6F5 29336887
    4501 5opx:I (3.64) BS01 ADP 5.6.1.7 GO:0000287 ... P0A6F5 29336887
    4502 5opx:J (3.64) BS01 ADP 5.6.1.7 GO:0000287 ... P0A6F5 29336887
    4503 5opx:K (3.64) BS01 ADP 5.6.1.7 GO:0000287 ... P0A6F5 29336887
    4504 5opx:L (3.64) BS01 ADP 5.6.1.7 GO:0000287 ... P0A6F5 29336887
    4505 5opx:M (3.64) BS01 ADP 5.6.1.7 GO:0000287 ... P0A6F5 29336887
    4506 5opx:N (3.64) BS01 ADP 5.6.1.7 GO:0000287 ... P0A6F5 29336887
    4507 5oqu:A (2.324) BS01 ADP 2.7.11.1 GO:0004672 ... P68400 29732088
    4508 5oqu:B (2.324) BS01 ADP 2.7.11.1 GO:0004672 ... P68400 29732088
    4509 5orj:A (1.99) BS04 ADP 2.7.11.1 GO:0004672 ... P68400 29732088
    4510 5orj:B (1.99) BS03 ADP 2.7.11.1 GO:0004672 ... P68400 29732088
    4511 5ork:A (2.143) BS01 ADP 2.7.11.1 GO:0004672 ... P68400 29732088
    4512 5ork:B (2.143) BS01 ADP 2.7.11.1 GO:0004672 ... P68400 29732088
    4513 5orl:A (1.69) BS01 ADP 2.7.11.1 GO:0004672 ... O14965 29045126
    4514 5orn:A (2.19) BS01 ADP 2.7.11.1 GO:0004672 ... O14965 29045126
    4515 5oro:A (2.12) BS01 ADP 2.7.11.1 GO:0004672 ... O14965 29045126
    4516 5orp:A (2.19) BS01 ADP 2.7.11.1 GO:0004672 ... O14965 29045126
    4517 5orr:A (2.09) BS01 ADP 2.7.11.1 GO:0004672 ... O14965 29045126
    4518 5ors:A (1.98) BS01 ADP 2.7.11.1 GO:0004672 ... O14965 29045126
    4519 5ort:A (2.56) BS01 ADP 2.7.11.1 GO:0004672 ... O14965 29045126
    4520 5orv:A (1.88) BS01 ADP 2.7.11.1 GO:0004672 ... O14965 29045126
    4521 5orw:A (2.0) BS01 ADP 2.7.11.1 GO:0004672 ... O14965 29045126
    4522 5orx:A (1.88) BS01 ADP 2.7.11.1 GO:0004672 ... O14965 29045126
    4523 5ory:A (1.99) BS01 ADP 2.7.11.1 GO:0004672 ... O14965 29045126
    4524 5orz:A (1.92) BS01 ADP 2.7.11.1 GO:0004672 ... O14965 29045126
    4525 5os0:A (1.74) BS01 ADP 2.7.11.1 GO:0004672 ... O14965 29045126
    4526 5os1:A (1.9) BS01 ADP 2.7.11.1 GO:0004672 ... O14965 29045126
    4527 5os2:A (1.92) BS01 ADP 2.7.11.1 GO:0004672 ... O14965 29045126
    4528 5os3:A (1.81) BS01 ADP 2.7.11.1 GO:0004672 ... O14965 29045126
    4529 5os4:A (1.88) BS01 ADP 2.7.11.1 GO:0004672 ... O14965 29045126
    4530 5os5:A (1.74) BS01 ADP 2.7.11.1 GO:0004672 ... O14965 29045126
    4531 5os6:A (2.2) BS01 ADP 2.7.11.1 GO:0004672 ... O14965 29045126
    4532 5osd:A (1.99) BS01 ADP 2.7.11.1 GO:0004672 ... O14965 29045126
    4533 5ose:A (1.9) BS01 ADP 2.7.11.1 GO:0004672 ... O14965 29045126
    4534 5osf:A (1.89) BS01 ADP 2.7.11.1 GO:0004672 ... O14965 29045126
    4535 5osl:A (1.95) BS01 ADP 2.7.11.1 GO:0004672 ... P68400 29732088
    4536 5ovo:A (1.55) BS01 ADP 3.2.2.24 GO:0000166 ... A7XNI2 N/A
    4537 5ovo:B (1.55) BS01 ADP ? GO:0006808 ... P70731 N/A
    4538 5sup:A (2.6) BS03 ADP 3.6.4.13 GO:0003676 ... Q07478 28059701
    4539 5sup:B (2.6) BS03 ADP 3.6.4.13 GO:0003676 ... Q07478 28059701
    4540 5sup:C (2.6) BS03 ADP 3.6.4.13 GO:0003676 ... Q07478 28059701
    4541 5sxr:B (1.69) BS03 ADP 1.11.1.21 GO:0004096 ... Q3JNW6 20554537
    4542 5t0c:AB (3.8) BS01 ADP ? GO:0000502 ... P62191 27791164
    4543 5t0c:AC (3.8) BS01 ADP ? GO:0000502 ... P62195 27791164
    4544 5t0c:BB (3.8) BS01 ADP ? GO:0000502 ... P62191 27791164
    4545 5t0c:BC (3.8) BS01 ADP ? GO:0000502 ... P62195 27791164
    4546 5t0h:A (6.8) BS01 ADP ? GO:0000502 ... P35998 27791164
    4547 5t0h:B (6.8) BS01 ADP ? GO:0000502 ... P62191 27791164
    4548 5t0h:C (6.8) BS01 ADP ? GO:0000502 ... P62195 27791164
    4549 5t0h:D (6.8) BS01 ADP ? GO:0000502 ... P43686 27791164
    4550 5t0h:E (6.8) BS01 ADP ? GO:0000502 ... P62333 27791164
    4551 5t0h:E (6.8) BS02 ADP ? GO:0000502 ... P62333 27791164
    4552 5t0h:F (6.8) BS01 ADP ? GO:0000502 ... P17980 27791164
    4553 5t0h:F (6.8) BS02 ADP ? GO:0000502 ... P17980 27791164
    4554 5t3o:A (2.2) BS01 ADP 2.7.6.1 GO:0000287 ... Q5SHU3 28580926
    4555 5t3o:B (2.2) BS01 ADP 2.7.6.1 GO:0000287 ... Q5SHU3 28580926
    4556 5t3o:C (2.2) BS01 ADP 2.7.6.1 GO:0000287 ... Q5SHU3 28580926
    4557 5t45:A (2.8) BS04 ADP ? GO:0003774 ... P10587 27815532
    4558 5t4o:F (6.9) BS01 ADP 7.1.2.2 GO:0005515 ... P0ABB4 28001127
    4559 5t4p:E (7.77) BS01 ADP 7.1.2.2 GO:0005515 ... P0ABB4 28001127
    4560 5t4q:D (8.53) BS01 ADP 7.1.2.2 GO:0005515 ... P0ABB4 28001127
    4561 5t5t:C (3.46) BS03 ADP ? GO:0004672 ... P80385 28289077
    4562 5tdf:A (1.8) BS02 ADP 2.3.3.8 GO:0046912 ... P53396 28777081 MOAD: Ki=150uM
    4563 5tdm:A (2.1) BS02 ADP 2.3.3.8 GO:0046912 ... P53396 28777081 MOAD: Ki=150uM
    4564 5tdz:A (2.0) BS01 ADP 2.3.3.8 GO:0046912 ... P53396 28777081 MOAD: Ki=150uM
    4565 5tes:A (2.4) BS03 ADP 2.3.3.8 GO:0046912 ... P53396 28777081 MOAD: Ki=150uM
    4566 5tjr:A (2.95) BS01 ADP N/A GO:0004491 ... N/A 27933790
    4567 5tjr:B (2.95) BS01 ADP N/A GO:0004491 ... N/A 27933790
    4568 5tjr:D (2.95) BS01 ADP N/A GO:0004491 ... N/A 27933790
    4569 5tjr:E (2.95) BS01 ADP N/A GO:0004491 ... N/A 27933790
    4570 5tjr:F (2.95) BS01 ADP N/A GO:0004491 ... N/A 27933790
    4571 5tkr:A (1.8) BS01 ADP 2.7.1.232 GO:0000166 ... B3VI55 28196882
    4572 5tsg:B (3.4011) BS02 ADP ? GO:0000166 ... Q39VU7 28474682
    4573 5tsg:C (3.4011) BS02 ADP ? GO:0000166 ... Q39VU7 28474682
    4574 5tsh:E (2.3) BS02 ADP ? GO:0000166 ... Q39VU7 28474682
    4575 5tsh:F (2.3) BS02 ADP ? GO:0000166 ... Q39VU7 28474682
    4576 5tth:A (3.2) BS01 ADP ? GO:0000287 ... A8WFV1
    Q8G9G1
    28742020
    4577 5tth:B (3.2) BS01 ADP ? GO:0000287 ... A8WFV1
    Q8G9G1
    28742020
    4578 5tvw:A (2.5) BS01 ADP ? GO:0000287 ... F1Q9X9 28742020
    4579 5tvx:A (2.2) BS01 ADP ? GO:0000287 ... A8WFV1 28742020
    4580 5tvx:B (2.2) BS01 ADP ? GO:0000287 ... A8WFV1 28742020
    4581 5txv:A (7.086) BS01 ADP ? GO:0000287 ... P0A6H5 28223361
    4582 5txv:B (7.086) BS01 ADP ? GO:0000287 ... P0A6H5 28223361
    4583 5txv:C (7.086) BS01 ADP ? GO:0000287 ... P0A6H5 28223361
    4584 5txv:D (7.086) BS01 ADP ? GO:0000287 ... P0A6H5 28223361
    4585 5txv:E (7.086) BS01 ADP ? GO:0000287 ... P0A6H5 28223361
    4586 5txv:F (7.086) BS01 ADP ? GO:0000287 ... P0A6H5 28223361
    4587 5txv:G (7.086) BS01 ADP ? GO:0000287 ... P0A6H5 28223361
    4588 5txv:H (7.086) BS01 ADP ? GO:0000287 ... P0A6H5 28223361
    4589 5txv:I (7.086) BS01 ADP ? GO:0000287 ... P0A6H5 28223361
    4590 5txv:J (7.086) BS01 ADP ? GO:0000287 ... P0A6H5 28223361
    4591 5txv:K (7.086) BS01 ADP ? GO:0000287 ... P0A6H5 28223361
    4592 5txv:L (7.086) BS01 ADP ? GO:0000287 ... P0A6H5 28223361
    4593 5txv:M (7.086) BS01 ADP ? GO:0000287 ... P0A6H5 28223361
    4594 5txv:N (7.086) BS01 ADP ? GO:0000287 ... P0A6H5 28223361
    4595 5txv:O (7.086) BS01 ADP ? GO:0000287 ... P0A6H5 28223361
    4596 5txv:P (7.086) BS01 ADP ? GO:0000287 ... P0A6H5 28223361
    4597 5txv:Q (7.086) BS01 ADP ? GO:0000287 ... P0A6H5 28223361
    4598 5txv:R (7.086) BS01 ADP ? GO:0000287 ... P0A6H5 28223361
    4599 5txv:S (7.086) BS01 ADP ? GO:0000287 ... P0A6H5 28223361
    4600 5txv:T (7.086) BS01 ADP ? GO:0000287 ... P0A6H5 28223361

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218