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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 12079 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1801 3cf0:G (3.0) BS01 ADP 3.6.4.6 GO:0005524 ... Q01853 18462676
    1802 3cf0:H (3.0) BS01 ADP 3.6.4.6 GO:0005524 ... Q01853 18462676
    1803 3cf0:I (3.0) BS01 ADP 3.6.4.6 GO:0005524 ... Q01853 18462676
    1804 3cf0:J (3.0) BS01 ADP 3.6.4.6 GO:0005524 ... Q01853 18462676
    1805 3cf0:K (3.0) BS01 ADP 3.6.4.6 GO:0005524 ... Q01853 18462676
    1806 3cf0:L (3.0) BS01 ADP 3.6.4.6 GO:0005524 ... Q01853 18462676
    1807 3cf0:M (3.0) BS01 ADP 3.6.4.6 GO:0005524 ... Q01853 18462676
    1808 3cf0:N (3.0) BS01 ADP 3.6.4.6 GO:0005524 ... Q01853 18462676
    1809 3cf1:A (4.4) BS01 ADP 3.6.4.6 GO:0000502 ... Q01853 18462676 PDBbind: -logKd/Ki=6.64, Kd=230nM
    1810 3cf1:A (4.4) BS02 ADP 3.6.4.6 GO:0000502 ... Q01853 18462676 PDBbind: -logKd/Ki=6.64, Kd=230nM
    1811 3cf1:B (4.4) BS01 ADP 3.6.4.6 GO:0000502 ... Q01853 18462676
    1812 3cf1:B (4.4) BS02 ADP 3.6.4.6 GO:0000502 ... Q01853 18462676
    1813 3cf1:C (4.4) BS01 ADP 3.6.4.6 GO:0000502 ... Q01853 18462676
    1814 3cf1:C (4.4) BS02 ADP 3.6.4.6 GO:0000502 ... Q01853 18462676
    1815 3cf2:A (3.5) BS01 ADP 3.6.4.6 GO:0000502 ... Q01853 18462676
    1816 3cf2:B (3.5) BS01 ADP 3.6.4.6 GO:0000502 ... Q01853 18462676
    1817 3cf2:C (3.5) BS01 ADP 3.6.4.6 GO:0000502 ... Q01853 18462676
    1818 3cf2:D (3.5) BS01 ADP 3.6.4.6 GO:0000502 ... Q01853 18462676
    1819 3cf3:A (4.25) BS01 ADP 3.6.4.6 GO:0000502 ... Q01853 18462676
    1820 3cf3:A (4.25) BS02 ADP 3.6.4.6 GO:0000502 ... Q01853 18462676
    1821 3cf3:B (4.25) BS01 ADP 3.6.4.6 GO:0000502 ... Q01853 18462676
    1822 3cf3:B (4.25) BS02 ADP 3.6.4.6 GO:0000502 ... Q01853 18462676
    1823 3cf3:C (4.25) BS01 ADP 3.6.4.6 GO:0000502 ... Q01853 18462676
    1824 3cf3:C (4.25) BS02 ADP 3.6.4.6 GO:0000502 ... Q01853 18462676
    1825 3cjo:A (2.28) BS01 ADP ? GO:0003777 ... P52732 18578472
    1826 3cjo:B (2.28) BS01 ADP ? GO:0003777 ... P52732 18578472
    1827 3cmt:A (3.15) BS12 ADP ? GO:0000725 ... P0A7G6 18497818
    1828 3cmt:A (3.15) BS13 ADP ? GO:0000725 ... P0A7G6 18497818
    1829 3cmt:A (3.15) BS14 ADP ? GO:0000725 ... P0A7G6 18497818
    1830 3cmt:A (3.15) BS15 ADP ? GO:0000725 ... P0A7G6 18497818
    1831 3cmt:A (3.15) BS16 ADP ? GO:0000725 ... P0A7G6 18497818
    1832 3cmt:D (3.15) BS13 ADP ? GO:0000725 ... P0A7G6 18497818
    1833 3cmt:D (3.15) BS14 ADP ? GO:0000725 ... P0A7G6 18497818
    1834 3cmt:D (3.15) BS15 ADP ? GO:0000725 ... P0A7G6 18497818
    1835 3cmt:D (3.15) BS16 ADP ? GO:0000725 ... P0A7G6 18497818
    1836 3cmt:D (3.15) BS17 ADP ? GO:0000725 ... P0A7G6 18497818
    1837 3cmu:A (4.2) BS10 ADP ? GO:0000725 ... P0A7G6 18497818
    1838 3cmu:A (4.2) BS11 ADP ? GO:0000725 ... P0A7G6 18497818
    1839 3cmu:A (4.2) BS12 ADP ? GO:0000725 ... P0A7G6 18497818
    1840 3cmu:A (4.2) BS13 ADP ? GO:0000725 ... P0A7G6 18497818
    1841 3cmu:A (4.2) BS14 ADP ? GO:0000725 ... P0A7G6 18497818
    1842 3cmu:A (4.2) BS15 ADP ? GO:0000725 ... P0A7G6 18497818
    1843 3cmw:A (2.8) BS08 ADP ? GO:0000725 ... P0A7G6 18497818
    1844 3cmw:A (2.8) BS09 ADP ? GO:0000725 ... P0A7G6 18497818
    1845 3cmw:A (2.8) BS10 ADP ? GO:0000725 ... P0A7G6 18497818
    1846 3cmw:A (2.8) BS11 ADP ? GO:0000725 ... P0A7G6 18497818
    1847 3cmw:A (2.8) BS12 ADP ? GO:0000725 ... P0A7G6 18497818
    1848 3cmw:C (2.8) BS07 ADP ? GO:0000725 ... P0A7G6 18497818
    1849 3cmw:C (2.8) BS08 ADP ? GO:0000725 ... P0A7G6 18497818
    1850 3cmw:C (2.8) BS09 ADP ? GO:0000725 ... P0A7G6 18497818
    1851 3cmw:C (2.8) BS10 ADP ? GO:0000725 ... P0A7G6 18497818
    1852 3cmw:C (2.8) BS11 ADP ? GO:0000725 ... P0A7G6 18497818
    1853 3cmx:A (3.4) BS13 ADP ? GO:0000725 ... P0A7G6 18497818
    1854 3cmx:A (3.4) BS14 ADP ? GO:0000725 ... P0A7G6 18497818
    1855 3cmx:A (3.4) BS15 ADP ? GO:0000725 ... P0A7G6 18497818
    1856 3cmx:A (3.4) BS16 ADP ? GO:0000725 ... P0A7G6 18497818
    1857 3cmx:A (3.4) BS17 ADP ? GO:0000725 ... P0A7G6 18497818
    1858 3cmx:D (3.4) BS13 ADP ? GO:0000725 ... P0A7G6 18497818
    1859 3cmx:D (3.4) BS14 ADP ? GO:0000725 ... P0A7G6 18497818
    1860 3cmx:D (3.4) BS15 ADP ? GO:0000725 ... P0A7G6 18497818
    1861 3cmx:D (3.4) BS16 ADP ? GO:0000725 ... P0A7G6 18497818
    1862 3cmx:D (3.4) BS17 ADP ? GO:0000725 ... P0A7G6 18497818
    1863 3cnz:A (2.9) BS01 ADP ? GO:0003777 ... Q41460 18513992
    1864 3cnz:B (2.9) BS01 ADP ? GO:0003777 ... Q41460 18513992
    1865 3cob:A (2.2) BS01 ADP ? GO:0003777 ... Q41460 18513992
    1866 3cob:C (2.2) BS01 ADP ? GO:0003777 ... Q41460 18513992
    1867 3cop:A (2.3) BS02 ADP 2.4.1.21 GO:0004373 ... P0A6U8 19244233
    1868 3cr3:A (2.1) BS03 ADP 2.7.1.121 GO:0000287 ... Q9CIV7 18957416
    1869 3cr3:B (2.1) BS03 ADP 2.7.1.121 GO:0000287 ... Q9CIV7 18957416
    1870 3cr7:A (2.5) BS01 ADP 2.7.1.25 GO:0000103 ... Q12657 N/A
    1871 3cr7:B (2.5) BS01 ADP 2.7.1.25 GO:0000103 ... Q12657 N/A
    1872 3cr7:C (2.5) BS01 ADP 2.7.1.25 GO:0000103 ... Q12657 N/A
    1873 3cr7:D (2.5) BS01 ADP 2.7.1.25 GO:0000103 ... Q12657 N/A
    1874 3cwq:A (2.47) BS01 ADP ? GO:0000166 ... Q6YRW8 N/A
    1875 3cwq:B (2.47) BS01 ADP ? GO:0000166 ... Q6YRW8 N/A
    1876 3cx4:A (2.29) BS10 ADP 2.4.1.21 GO:0004373 ... P0A6U8 19761218
    1877 3d2r:A (2.03) BS01 ADP 2.7.11.2 GO:0004672 ... Q16654 18658136 MOAD: Kd=3.3uM
    PDBbind: -logKd/Ki=5.48, Kd=3.3uM
    1878 3d2r:B (2.03) BS01 ADP 2.7.11.2 GO:0004672 ... Q16654 18658136 MOAD: Kd=3.3uM
    1879 3d36:A (2.03) BS01 ADP N/A GO:0000155 ... N/A 19101565
    1880 3d36:B (2.03) BS01 ADP N/A GO:0000155 ... N/A 19101565
    1881 3d54:A (3.5) BS01 ADP 6.3.5.3 GO:0000287 ... Q9X0X3 18597481
    1882 3d54:E (3.5) BS01 ADP 6.3.5.3 GO:0000287 ... Q9X0X3 18597481
    1883 3d54:I (3.5) BS01 ADP 6.3.5.3 GO:0000287 ... Q9X0X3 18597481
    1884 3d5w:A (2.6) BS01 ADP 2.7.11.21 GO:0004672 ... Q4KMI8 18703838
    1885 3d8b:A (2.0) BS01 ADP 3.6.4.- GO:0005524 ... Q6PIW4 N/A
    1886 3d8b:B (2.0) BS01 ADP 3.6.4.- GO:0005524 ... Q6PIW4 N/A
    1887 3dc4:A (1.9) BS01 ADP ? GO:0003777 ... P18105 19135893
    1888 3dco:N (11.0) BS01 ADP ? GO:0003777 ... P18105 19135893
    1889 3dge:A (2.8) BS01 ADP 2.7.13.3 GO:0000155 ... Q9WZV7 19800110
    1890 3dge:B (2.8) BS01 ADP 2.7.13.3 GO:0000155 ... Q9WZV7 19800110
    1891 3dgm:A (2.4) BS02 ADP N/A N/A N/A N/A
    1892 3dgn:A (2.7) BS02 ADP N/A N/A N/A 19522480 PDBbind: -logKd/Ki=6.21, Kd=620nM
    1893 3din:A (4.5) BS02 ADP 7.4.2.8 GO:0005524 ... Q9X1R4 18923516
    1894 3din:B (4.5) BS02 ADP 7.4.2.8 GO:0005524 ... Q9X1R4 18923516
    1895 3dkp:A (2.1) BS01 ADP 3.6.4.13 GO:0003676 ... Q9Y2R4 20941364
    1896 3dkp:A (2.1) BS02 ADP 3.6.4.13 GO:0003676 ... Q9Y2R4 20941364
    1897 3dls:A (2.3) BS03 ADP 2.7.11.1 GO:0004672 ... Q96RG2 20943661
    1898 3dls:B (2.3) BS03 ADP 2.7.11.1 GO:0004672 ... Q96RG2 20943661
    1899 3dls:C (2.3) BS04 ADP 2.7.11.1 GO:0004672 ... Q96RG2 20943661
    1900 3dls:D (2.3) BS03 ADP 2.7.11.1 GO:0004672 ... Q96RG2 20943661
    1901 3dls:E (2.3) BS02 ADP 2.7.11.1 GO:0004672 ... Q96RG2 20943661
    1902 3dls:F (2.3) BS02 ADP 2.7.11.1 GO:0004672 ... Q96RG2 20943661
    1903 3drb:B (2.0) BS01 ADP 2.7.3.2 GO:0003824 ... P12277 18977227
    1904 3dsr:A (2.7) BS01 ADP 3.6.3.14 GO:0005524 ... Q60187 19020348
    1905 3dsr:B (2.7) BS01 ADP 3.6.3.14 GO:0005524 ... Q60187 19020348
    1906 3dzd:A (2.4) BS01 ADP ? GO:0000160 ... O66551 18955063
    1907 3dzd:B (2.4) BS01 ADP ? GO:0000160 ... O66551 18955063
    1908 3dzv:A (2.57) BS01 ADP 2.7.1.50 GO:0000287 ... Q830K4 N/A
    1909 3dzv:B (2.57) BS01 ADP 2.7.1.50 GO:0000287 ... Q830K4 N/A
    1910 3ec2:A (2.7) BS01 ADP ? GO:0005524 ... O67056 19013274
    1911 3ecc:A (2.7) BS01 ADP ? GO:0005524 ... O67056 19013274
    1912 3egi:A (2.21) BS01 ADP 2.1.1.- GO:0001510 ... Q96RS0 19307714
    1913 3egi:B (2.21) BS01 ADP 2.1.1.- GO:0001510 ... Q96RS0 19307714
    1914 3egi:C (2.21) BS01 ADP 2.1.1.- GO:0001510 ... Q96RS0 19307714
    1915 3egi:D (2.21) BS01 ADP 2.1.1.- GO:0001510 ... Q96RS0 19307714
    1916 3eh9:A (1.7) BS01 ADP 2.7.11.1 GO:0004672 ... P53355 19237746
    1917 3ehh:A (2.1) BS01 ADP 2.7.13.3 GO:0000155 ... O34757 19805278
    1918 3ehh:B (2.1) BS01 ADP 2.7.13.3 GO:0000155 ... O34757 19805278
    1919 3eqg:A (2.5) BS01 ADP 2.7.12.2 GO:0000165 ... Q02750 19161339
    1920 3eqh:A (2.0) BS02 ADP 2.7.12.2 GO:0000165 ... Q02750 19161339
    1921 3eqi:A (1.9) BS01 ADP 2.7.12.2 GO:0000165 ... Q02750 19161339
    1922 3etj:A (1.6) BS01 ADP 6.3.4.18 GO:0004638 ... P09029 19053251
    1923 3etj:B (1.6) BS01 ADP 6.3.4.18 GO:0004638 ... P09029 19053251
    1924 3ews:A (2.7) BS01 ADP 3.6.4.13 GO:0003676 ... Q9UMR2 19244245
    1925 3ews:B (2.7) BS01 ADP 3.6.4.13 GO:0003676 ... Q9UMR2 19244245
    1926 3ex7:C (2.301) BS02 ADP 3.6.4.13 GO:0000184 ... P38919 19033377
    1927 3ex7:H (2.301) BS02 ADP 3.6.4.13 GO:0000184 ... P38919 19033377
    1928 3ez2:A (2.05) BS01 ADP ? GO:0030541 ... P07620 19461582
    1929 3ez2:A (2.05) BS02 ADP ? GO:0030541 ... P07620 19461582
    1930 3ez2:A (2.05) BS03 ADP ? GO:0030541 ... P07620 19461582
    1931 3ez2:B (2.05) BS01 ADP ? GO:0030541 ... P07620 19461582
    1932 3ez2:B (2.05) BS02 ADP ? GO:0030541 ... P07620 19461582
    1933 3ez2:B (2.05) BS03 ADP ? GO:0030541 ... P07620 19461582
    1934 3ez6:A (2.58) BS01 ADP ? GO:0030541 ... P07620 19461582
    1935 3ez6:B (2.58) BS01 ADP ? GO:0030541 ... P07620 19461582
    1936 3f5g:A (1.85) BS01 ADP 2.7.11.1 GO:0004672 ... P53355 19237746
    1937 3f61:A (1.8) BS01 ADP 2.7.11.1 GO:0004672 ... P9WI81 19008858
    1938 3fd6:A (1.95) BS01 ADP 2.7.9.3 GO:0004756 ... P49903 19477186
    1939 3fd6:A (1.95) BS04 ADP 2.7.9.3 GO:0004756 ... P49903 19477186
    1940 3fd6:B (1.95) BS01 ADP 2.7.9.3 GO:0004756 ... P49903 19477186
    1941 3fd6:B (1.95) BS02 ADP 2.7.9.3 GO:0004756 ... P49903 19477186
    1942 3fe1:A (2.2) BS01 ADP ? GO:0005524 ... P17066 20072699
    1943 3fe1:B (2.2) BS01 ADP ? GO:0005524 ... P17066 20072699
    1944 3fe1:C (2.2) BS01 ADP ? GO:0005524 ... P17066 20072699
    1945 3fe2:A (2.6) BS01 ADP 3.6.4.13 GO:0003676 ... P17844 20941364
    1946 3fe2:B (2.6) BS01 ADP 3.6.4.13 GO:0003676 ... P17844 20941364
    1947 3feg:A (1.302) BS02 ADP 2.7.1.32
    2.7.1.82
    GO:0004103 ... Q9Y259 20299452
    1948 3fh0:A (2.15) BS01 ADP ? GO:0005524 ... A6T8F5 N/A
    1949 3fh0:B (2.15) BS01 ADP ? GO:0005524 ... A6T8F5 N/A
    1950 3fi8:A (2.3) BS01 ADP 2.7.1.32 N/A Q8IM71 N/A
    1951 3fmo:B (2.51) BS01 ADP 3.6.4.13 GO:0003676 ... Q9UMR2 19208808
    1952 3fmp:B (3.19) BS01 ADP 3.6.4.13 GO:0003676 ... Q9UMR2 19208808
    1953 3fmp:D (3.19) BS01 ADP 3.6.4.13 GO:0003676 ... Q9UMR2 19208808
    1954 3fps:A (3.2) BS02 ADP 7.2.2.10 GO:0000166 ... P04191 19289472
    1955 3fwr:A (2.45) BS01 ADP ? N/A O34994 N/A
    1956 3fwr:B (2.45) BS01 ADP ? N/A O34994 N/A
    1957 3fwy:A (1.63) BS01 ADP 1.3.7.7 GO:0005524 ... Q9RFD6 19006326
    1958 3fwy:B (1.63) BS02 ADP 1.3.7.7 GO:0005524 ... Q9RFD6 19006326
    1959 3fyh:A (1.9) BS01 ADP ? GO:0000166 ... O73948 19555119
    1960 3g15:A (1.7) BS01 ADP 2.7.1.32
    2.7.1.82
    N/A P35790 20299452
    1961 3g15:B (1.7) BS01 ADP 2.7.1.32
    2.7.1.82
    N/A P35790 20299452
    1962 3g2f:A (2.35) BS01 ADP 2.7.11.30 GO:0004672 ... Q13873 31797984
    1963 3g2f:B (2.35) BS01 ADP 2.7.11.30 GO:0004672 ... Q13873 31797984
    1964 3g37:O (6.0) BS01 ADP 3.6.4.- GO:0000287 ... P68135 20946985
    1965 3g37:P (6.0) BS01 ADP 3.6.4.- GO:0000287 ... P68135 20946985
    1966 3g37:Q (6.0) BS01 ADP 3.6.4.- GO:0000287 ... P68135 20946985
    1967 3g37:R (6.0) BS01 ADP 3.6.4.- GO:0000287 ... P68135 20946985
    1968 3g37:S (6.0) BS01 ADP 3.6.4.- GO:0000287 ... P68135 20946985
    1969 3g37:T (6.0) BS01 ADP 3.6.4.- GO:0000287 ... P68135 20946985
    1970 3g37:U (6.0) BS01 ADP 3.6.4.- GO:0000287 ... P68135 20946985
    1971 3g37:V (6.0) BS01 ADP 3.6.4.- GO:0000287 ... P68135 20946985
    1972 3g37:W (6.0) BS02 ADP 3.6.4.- GO:0000287 ... P68135 20946985
    1973 3g37:X (6.0) BS02 ADP 3.6.4.- GO:0000287 ... P68135 20946985
    1974 3g37:Y (6.0) BS02 ADP 3.6.4.- GO:0000287 ... P68135 20946985
    1975 3g37:Z (6.0) BS01 ADP 3.6.4.- GO:0000287 ... P68135 20946985
    1976 3g8c:A (2.0) BS01 ADP 6.3.4.14 GO:0003824 ... P24182 19213731
    1977 3g8c:B (2.0) BS01 ADP 6.3.4.14 GO:0003824 ... P24182 19213731
    1978 3g8d:B (1.9) BS01 ADP 6.3.4.14 GO:0003824 ... P24182 19213731
    1979 3gbj:A (2.102) BS01 ADP ? GO:0003777 ... Q9NQT8 N/A
    1980 3gbj:B (2.102) BS01 ADP ? GO:0003777 ... Q9NQT8 N/A
    1981 3gbj:C (2.102) BS01 ADP ? GO:0003777 ... Q9NQT8 N/A
    1982 3gdq:A (1.8) BS01 ADP ? GO:0005524 ... P34931 20072699
    1983 3ge1:A (2.7) BS01 ADP 2.7.1.30 GO:0004370 ... Q5HGD2 N/A
    1984 3ge1:B (2.7) BS01 ADP 2.7.1.30 GO:0004370 ... Q5HGD2 N/A
    1985 3ge1:C (2.7) BS01 ADP 2.7.1.30 GO:0004370 ... Q5HGD2 N/A
    1986 3ge1:D (2.7) BS01 ADP 2.7.1.30 GO:0004370 ... Q5HGD2 N/A
    1987 3gif:A (2.7) BS01 ADP 2.7.13.3 GO:0000155 ... O34757 19805278
    1988 3glf:B (3.388) BS02 ADP 2.7.7.7 GO:0003677 ... P06710 19450514
    1989 3glf:C (3.388) BS02 ADP 2.7.7.7 GO:0003677 ... P06710 19450514
    1990 3glf:D (3.388) BS02 ADP 2.7.7.7 GO:0003677 ... P06710 19450514
    1991 3glf:G (3.388) BS02 ADP 2.7.7.7 GO:0003677 ... P06710 19450514
    1992 3glf:H (3.388) BS02 ADP 2.7.7.7 GO:0003677 ... P06710 19450514
    1993 3glf:I (3.388) BS02 ADP 2.7.7.7 GO:0003677 ... P06710 19450514
    1994 3glg:B (3.25) BS02 ADP 2.7.7.7 GO:0003677 ... P06710 19450514
    1995 3glg:C (3.25) BS02 ADP 2.7.7.7 GO:0003677 ... P06710 19450514
    1996 3glg:D (3.25) BS02 ADP 2.7.7.7 GO:0003677 ... P06710 19450514
    1997 3glg:G (3.25) BS02 ADP 2.7.7.7 GO:0003677 ... P06710 19450514
    1998 3glg:H (3.25) BS02 ADP 2.7.7.7 GO:0003677 ... P06710 19450514
    1999 3glg:I (3.25) BS02 ADP 2.7.7.7 GO:0003677 ... P06710 19450514
    2000 3gli:B (3.5) BS03 ADP 2.7.7.7 GO:0003677 ... P06710 19450514

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218