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BioLiP
Download all results in tab-seperated text for 12 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1p7m:A (-1.00) BS02 ADK 3.2.2.20 GO:0003824 ... P05100 13129925 PDBbind: -logKd/Ki=4.38, Kd=42uM
    BindingDB: IC50=1500000nM
    2 2ofi:A (1.85) BS04 ADK 3.2.2.20 GO:0003824 ... Q8Z2A5 17410210
    3 4ai5:A (2.22) BS02 ADK N/A GO:0003824 ... N/A 22684054 MOAD: Kd=1.2mM
    PDBbind: -logKd/Ki=2.92, Kd=1.2mM
    4 4ai5:B (2.22) BS02 ADK N/A GO:0003824 ... N/A 22684054 MOAD: Kd=1.2mM
    5 4ai5:C (2.22) BS02 ADK N/A GO:0003824 ... N/A 22684054 MOAD: Kd=1.2mM
    6 4ai5:D (2.22) BS02 ADK N/A GO:0003824 ... N/A 22684054 MOAD: Kd=1.2mM
    7 4ai5:E (2.22) BS02 ADK N/A GO:0003824 ... N/A 22684054 MOAD: Kd=1.2mM
    8 4aia:A (1.8) BS02 ADK N/A GO:0003824 ... N/A 22684054 MOAD: Kd=220uM
    PDBbind: -logKd/Ki=3.66, Kd=220uM
    9 4aia:B (1.8) BS02 ADK N/A GO:0003824 ... N/A 22684054 MOAD: Kd=220uM
    10 4aia:C (1.8) BS02 ADK N/A GO:0003824 ... N/A 22684054 MOAD: Kd=220uM
    11 4aia:D (1.8) BS02 ADK N/A GO:0003824 ... N/A 22684054 MOAD: Kd=220uM
    12 4aia:E (1.8) BS02 ADK N/A GO:0003824 ... N/A 22684054 MOAD: Kd=220uM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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