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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 150 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1gxo:A (2.05) BS01 ADA 4.2.2.2 N/A Q9F7L3 12221284
    2 1gxo:A (2.05) BS02 ADA 4.2.2.2 N/A Q9F7L3 12221284
    3 1gxo:A (2.05) BS03 ADA 4.2.2.2 N/A Q9F7L3 12221284
    4 2ewe:A (2.2) BS01 ADA 4.2.2.2 GO:0005576 ... P11073 10368179
    5 2ewe:A (2.2) BS02 ADA 4.2.2.2 GO:0005576 ... P11073 10368179
    6 2ewe:A (2.2) BS03 ADA 4.2.2.2 GO:0005576 ... P11073 10368179
    7 2nsp:A (1.7) BS02 ADA 3.1.1.11 GO:0005576 ... P0C1A9 17717531
    8 2nsp:A (1.7) BS03 ADA 3.1.1.11 GO:0005576 ... P0C1A9 17717531
    9 2nsp:B (1.7) BS02 ADA 3.1.1.11 GO:0005576 ... P0C1A9 17717531
    10 2nsp:B (1.7) BS03 ADA 3.1.1.11 GO:0005576 ... P0C1A9 17717531
    11 2nst:A (1.7) BS04 ADA 3.1.1.11 GO:0005576 ... P0C1A9 17717531
    12 2nst:A (1.7) BS05 ADA 3.1.1.11 GO:0005576 ... P0C1A9 17717531
    13 2nst:B (1.7) BS03 ADA 3.1.1.11 GO:0005576 ... P0C1A9 17717531
    14 2nst:B (1.7) BS04 ADA 3.1.1.11 GO:0005576 ... P0C1A9 17717531
    15 2nt6:A (1.7) BS02 ADA 3.1.1.11 GO:0005576 ... P0C1A9 17717531
    16 2nt6:A (1.7) BS03 ADA 3.1.1.11 GO:0005576 ... P0C1A9 17717531
    17 2nt6:B (1.7) BS02 ADA 3.1.1.11 GO:0005576 ... P0C1A9 17717531
    18 2nt6:B (1.7) BS03 ADA 3.1.1.11 GO:0005576 ... P0C1A9 17717531
    19 2nt9:A (1.9) BS04 ADA 3.1.1.11 GO:0005576 ... P0C1A9 17717531
    20 2nt9:B (1.9) BS04 ADA 3.1.1.11 GO:0005576 ... P0C1A9 17717531
    21 2ntb:A (1.8) BS01 ADA 3.1.1.11 GO:0005576 ... P0C1A9 17717531
    22 2ntb:A (1.8) BS02 ADA 3.1.1.11 GO:0005576 ... P0C1A9 17717531
    23 2ntb:A (1.8) BS03 ADA 3.1.1.11 GO:0005576 ... P0C1A9 17717531
    24 2ntb:B (1.8) BS01 ADA 3.1.1.11 GO:0005576 ... P0C1A9 17717531
    25 2ntb:B (1.8) BS02 ADA 3.1.1.11 GO:0005576 ... P0C1A9 17717531
    26 2ntb:B (1.8) BS03 ADA 3.1.1.11 GO:0005576 ... P0C1A9 17717531
    27 2ntp:A (1.7) BS01 ADA 3.1.1.11 GO:0005576 ... P0C1A9 17717531
    28 2ntp:A (1.7) BS02 ADA 3.1.1.11 GO:0005576 ... P0C1A9 17717531
    29 2ntp:A (1.7) BS03 ADA 3.1.1.11 GO:0005576 ... P0C1A9 17717531
    30 2ntp:B (1.7) BS01 ADA 3.1.1.11 GO:0005576 ... P0C1A9 17717531
    31 2ntp:B (1.7) BS02 ADA 3.1.1.11 GO:0005576 ... P0C1A9 17717531
    32 2ntp:B (1.7) BS03 ADA 3.1.1.11 GO:0005576 ... P0C1A9 17717531
    33 2ntq:A (1.8) BS01 ADA 3.1.1.11 GO:0005576 ... P0C1A9 17717531
    34 2ntq:A (1.8) BS02 ADA 3.1.1.11 GO:0005576 ... P0C1A9 17717531
    35 2ntq:A (1.8) BS03 ADA 3.1.1.11 GO:0005576 ... P0C1A9 17717531
    36 2ntq:B (1.8) BS01 ADA 3.1.1.11 GO:0005576 ... P0C1A9 17717531
    37 2ntq:B (1.8) BS02 ADA 3.1.1.11 GO:0005576 ... P0C1A9 17717531
    38 2ntq:B (1.8) BS03 ADA 3.1.1.11 GO:0005576 ... P0C1A9 17717531
    39 2nzm:A (1.8) BS01 ADA 4.2.2.2 GO:0005576 ... P39116 20000851
    40 2nzm:A (1.8) BS02 ADA 4.2.2.2 GO:0005576 ... P39116 20000851
    41 2nzm:A (1.8) BS03 ADA 4.2.2.2 GO:0005576 ... P39116 20000851
    42 2o04:A (1.7) BS01 ADA 4.2.2.2 GO:0005576 ... P39116 20000851
    43 2o04:A (1.7) BS02 ADA 4.2.2.2 GO:0005576 ... P39116 20000851
    44 2o0v:A (1.9) BS01 ADA 4.2.2.2 GO:0005576 ... P39116 20000851
    45 2o0v:A (1.9) BS02 ADA 4.2.2.2 GO:0005576 ... P39116 20000851
    46 2o0v:A (1.9) BS03 ADA 4.2.2.2 GO:0005576 ... P39116 20000851
    47 2o17:A (2.3) BS01 ADA 4.2.2.2 GO:0005576 ... P39116 20000851
    48 2o17:A (2.3) BS02 ADA 4.2.2.2 GO:0005576 ... P39116 20000851
    49 2o17:A (2.3) BS03 ADA 4.2.2.2 GO:0005576 ... P39116 20000851
    50 2o1d:A (2.0) BS01 ADA 4.2.2.2 GO:0005576 ... P39116 20000851
    51 2o1d:A (2.0) BS02 ADA 4.2.2.2 GO:0005576 ... P39116 20000851
    52 2uvf:A (2.1) BS01 ADA ? GO:0004650 ... O68975 17397864
    53 2uvf:A (2.1) BS02 ADA ? GO:0004650 ... O68975 17397864
    54 2uvh:A (2.2) BS01 ADA N/A N/A N/A 17451747
    55 2uvh:A (2.2) BS02 ADA N/A N/A N/A 17451747
    56 2uvi:A (2.3) BS01 ADA N/A N/A N/A 17451747
    57 2uvj:A (1.8) BS01 ADA N/A N/A N/A 17451747
    58 2uvj:A (1.8) BS02 ADA N/A N/A N/A 17451747
    59 2uvj:A (1.8) BS03 ADA N/A N/A N/A 17451747
    60 2v8k:A (2.1) BS01 ADA 4.2.2.2 GO:0016829 ... A1JSS8 17881361
    61 2v8k:A (2.1) BS02 ADA 4.2.2.2 GO:0016829 ... A1JSS8 17881361
    62 2z8s:A (2.5) BS01 ADA 4.2.2.23 GO:0005576 ... O31526 17947240
    63 2z8s:B (2.5) BS01 ADA 4.2.2.23 GO:0005576 ... O31526 17947240
    64 3b8y:A (2.3) BS01 ADA 4.2.2.2 GO:0005576 ... O50325 18430740
    65 3b8y:A (2.3) BS02 ADA 4.2.2.2 GO:0005576 ... O50325 18430740
    66 3b8y:A (2.3) BS03 ADA 4.2.2.2 GO:0005576 ... O50325 18430740
    67 3b8y:B (2.3) BS01 ADA 4.2.2.2 GO:0005576 ... O50325 18430740
    68 3b8y:B (2.3) BS02 ADA 4.2.2.2 GO:0005576 ... O50325 18430740
    69 3dyb:A (1.32) BS01 ADA 3.4.21.64 GO:0004252 ... P06873 19255463
    70 3krg:A (1.9) BS01 ADA 4.2.2.2 GO:0005576 ... P39116 20000851
    71 3krg:A (1.9) BS02 ADA 4.2.2.2 GO:0005576 ... P39116 20000851
    72 3krg:A (1.9) BS03 ADA 4.2.2.2 GO:0005576 ... P39116 20000851
    73 3vmw:A (1.9) BS01 ADA 4.2.2.2 GO:0000272 ... D0VP31 22414692
    74 3vmw:A (1.9) BS02 ADA 4.2.2.2 GO:0000272 ... D0VP31 22414692
    75 3vmw:A (1.9) BS03 ADA 4.2.2.2 GO:0000272 ... D0VP31 22414692
    76 3zsc:A (1.94) BS01 ADA 4.2.2.22 GO:0000272 ... Q9WYR4 N/A
    77 3zsc:A (1.94) BS02 ADA 4.2.2.22 GO:0000272 ... Q9WYR4 N/A
    78 4ew9:A (1.6) BS01 ADA 4.2.2.2 GO:0005576 ... B9MKT4 23519661
    79 4ew9:A (1.6) BS08 ADA 4.2.2.2 GO:0005576 ... B9MKT4 23519661
    80 4ew9:B (1.6) BS01 ADA 4.2.2.2 GO:0005576 ... B9MKT4 23519661
    81 4mij:A (1.1) BS02 ADA ? GO:0030288 ... Q128M1 25540822
    82 4n8y:A (1.5) BS01 ADA N/A GO:0030288 ... N/A 25540822
    83 4n8y:B (1.5) BS01 ADA N/A GO:0030288 ... N/A 25540822
    84 4pr7:A (2.1) BS01 ADA ? GO:0005244 ... Q934G3 24914987
    85 4pr7:A (2.1) BS02 ADA ? GO:0005244 ... Q934G3 24914987
    86 4pr7:A (2.1) BS03 ADA ? GO:0005244 ... Q934G3 24914987
    87 4yz0:A (1.15) BS02 ADA 4.2.2.2 GO:0005576 ... B9MKT4 26327384
    88 4yz0:A (1.15) BS03 ADA 4.2.2.2 GO:0005576 ... B9MKT4 26327384
    89 4yz0:A (1.15) BS09 ADA 4.2.2.2 GO:0005576 ... B9MKT4 26327384
    90 4yz0:A (1.15) BS10 ADA 4.2.2.2 GO:0005576 ... B9MKT4 26327384
    91 4yz0:B (1.15) BS02 ADA 4.2.2.2 GO:0005576 ... B9MKT4 26327384
    92 4yz0:B (1.15) BS03 ADA 4.2.2.2 GO:0005576 ... B9MKT4 26327384
    93 4yz0:B (1.15) BS08 ADA 4.2.2.2 GO:0005576 ... B9MKT4 26327384
    94 4yz0:B (1.15) BS09 ADA 4.2.2.2 GO:0005576 ... B9MKT4 26327384
    95 4yz0:B (1.15) BS10 ADA 4.2.2.2 GO:0005576 ... B9MKT4 26327384
    96 4yz0:B (1.15) BS12 ADA 4.2.2.2 GO:0005576 ... B9MKT4 26327384
    97 4yz0:B (1.15) BS13 ADA 4.2.2.2 GO:0005576 ... B9MKT4 26327384
    98 4yza:A (1.25) BS02 ADA 4.2.2.2 GO:0005576 ... B9MKT4 26327384
    99 4yza:A (1.25) BS07 ADA 4.2.2.2 GO:0005576 ... B9MKT4 26327384
    100 4yza:A (1.25) BS08 ADA 4.2.2.2 GO:0005576 ... B9MKT4 26327384
    101 4yza:A (1.25) BS10 ADA 4.2.2.2 GO:0005576 ... B9MKT4 26327384
    102 4yza:B (1.25) BS01 ADA 4.2.2.2 GO:0005576 ... B9MKT4 26327384
    103 4yza:B (1.25) BS02 ADA 4.2.2.2 GO:0005576 ... B9MKT4 26327384
    104 4yza:B (1.25) BS08 ADA 4.2.2.2 GO:0005576 ... B9MKT4 26327384
    105 4yzq:A (1.48) BS01 ADA 4.2.2.2 GO:0005576 ... B9MKT4 26327384
    106 4yzq:A (1.48) BS02 ADA 4.2.2.2 GO:0005576 ... B9MKT4 26327384
    107 4yzq:A (1.48) BS08 ADA 4.2.2.2 GO:0005576 ... B9MKT4 26327384
    108 4yzq:B (1.48) BS01 ADA 4.2.2.2 GO:0005576 ... B9MKT4 26327384
    109 4yzq:B (1.48) BS02 ADA 4.2.2.2 GO:0005576 ... B9MKT4 26327384
    110 4yzq:B (1.48) BS08 ADA 4.2.2.2 GO:0005576 ... B9MKT4 26327384
    111 4yzq:B (1.48) BS09 ADA 4.2.2.2 GO:0005576 ... B9MKT4 26327384
    112 4yzx:A (1.25) BS01 ADA 4.2.2.2 GO:0005576 ... B9MKT4 26327384
    113 4yzx:A (1.25) BS02 ADA 4.2.2.2 GO:0005576 ... B9MKT4 26327384
    114 4yzx:A (1.25) BS03 ADA 4.2.2.2 GO:0005576 ... B9MKT4 26327384
    115 4yzx:B (1.25) BS01 ADA 4.2.2.2 GO:0005576 ... B9MKT4 26327384
    116 4yzx:B (1.25) BS02 ADA 4.2.2.2 GO:0005576 ... B9MKT4 26327384
    117 4yzx:B (1.25) BS03 ADA 4.2.2.2 GO:0005576 ... B9MKT4 26327384
    118 4yzx:B (1.25) BS09 ADA 4.2.2.2 GO:0005576 ... B9MKT4 26327384
    119 4yzx:B (1.25) BS10 ADA 4.2.2.2 GO:0005576 ... B9MKT4 26327384
    120 4z03:A (1.4) BS01 ADA 4.2.2.2 GO:0005576 ... B9MKT4 26327384
    121 4z03:A (1.4) BS02 ADA 4.2.2.2 GO:0005576 ... B9MKT4 26327384
    122 4z03:A (1.4) BS03 ADA 4.2.2.2 GO:0005576 ... B9MKT4 26327384
    123 4z03:A (1.4) BS09 ADA 4.2.2.2 GO:0005576 ... B9MKT4 26327384
    124 4z03:A (1.4) BS10 ADA 4.2.2.2 GO:0005576 ... B9MKT4 26327384
    125 4z03:B (1.4) BS02 ADA 4.2.2.2 GO:0005576 ... B9MKT4 26327384
    126 4z03:B (1.4) BS03 ADA 4.2.2.2 GO:0005576 ... B9MKT4 26327384
    127 4z06:B (1.55) BS05 ADA 4.2.2.2 GO:0005576 ... B9MKT4 26327384
    128 5amv:A (1.57) BS01 ADA 4.2.2.2 GO:0005576 ... P39116 26420545
    129 5olr:A (1.07) BS02 ADA 3.2.1.22
    3.2.1.n1    		 GO:0004557 ... Q8A051 29255254
    130 5olr:B (1.07) BS02 ADA 3.2.1.22
    3.2.1.n1    		 GO:0004557 ... Q8A051 29255254
    131 5olr:C (1.07) BS02 ADA 3.2.1.22
    3.2.1.n1    		 GO:0004557 ... Q8A051 29255254
    132 5ols:A (2.2) BS02 ADA 3.2.1.22
    3.2.1.n1    		 GO:0004557 ... Q8A051 29255254
    133 5xqo:A (3.2) BS02 ADA ? GO:0046872 ... B6H7Q7 29574769
    134 5xqo:B (3.2) BS03 ADA ? GO:0046872 ... B6H7Q7 29574769
    135 6hzg:A (1.6) BS01 ADA ? GO:0005975 ... A0A4V8GZY5 30877196
    136 6ncx:A (2.25) BS01 ADA 3.2.1.31 GO:0004553 ... A0A1E3AEY6 30729778
    137 6ncx:B (2.25) BS01 ADA 3.2.1.31 GO:0004553 ... A0A1E3AEY6 30729778
    138 6ncx:C (2.25) BS01 ADA 3.2.1.31 GO:0004553 ... A0A1E3AEY6 30729778
    139 6ncx:D (2.25) BS01 ADA 3.2.1.31 GO:0004553 ... A0A1E3AEY6 30729778
    140 6ojk:A (1.5) BS01 ADA N/A GO:0016837 ... N/A 31200020
    141 6ojk:A (1.5) BS02 ADA N/A GO:0016837 ... N/A 31200020
    142 6ojk:A (1.5) BS03 ADA N/A GO:0016837 ... N/A 31200020
    143 6ojl:A (1.5) BS01 ADA N/A GO:0016837 ... N/A 31200020
    144 6ojl:A (1.5) BS02 ADA N/A GO:0016837 ... N/A 31200020
    145 6ojl:A (1.5) BS03 ADA N/A GO:0016837 ... N/A 31200020
    146 7veu:A (1.736) BS01 ADA N/A N/A N/A 35879323
    147 7vew:A (1.92) BS01 ADA N/A N/A N/A 35879323
    148 7vew:A (1.92) BS02 ADA N/A N/A N/A 35879323
    149 7vew:B (1.92) BS01 ADA N/A N/A N/A 35879323
    150 7vew:B (1.92) BS02 ADA N/A N/A N/A 35879323
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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