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BioLiP
Download all results in tab-seperated text for 42 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1bk0:A (1.3) BS02 ACV 1.21.3.1 GO:0005506 ... P05326 9194566
    2 1blz:A (1.45) BS02 ACV 1.21.3.1 GO:0005506 ... P05326 9194566
    3 1qje:A (1.35) BS02 ACV 1.21.3.1 GO:0005506 ... P05326 10537113
    4 2bjs:A (1.3) BS02 ACV 1.21.3.1 GO:0005506 ... P05326 28703303
    5 2bjs:A (1.3) BS03 ACV 1.21.3.1 GO:0005506 ... P05326 28703303
    6 6y0o:A (2.2) BS01 ACV 1.21.3.1 GO:0005506 ... P05326 32939282
    7 6zae:A (1.4) BS02 ACV 1.21.3.1 GO:0005506 ... P05326 34417180
    8 6zaf:A (1.4001) BS01 ACV 1.21.3.1 GO:0005506 ... P05326 34417180
    9 6zag:A (1.4001) BS01 ACV 1.21.3.1 GO:0005506 ... P05326 34417180
    10 6zah:A (1.43) BS01 ACV 1.21.3.1 GO:0005506 ... P05326 34417180
    11 6zai:A (1.5501) BS01 ACV 1.21.3.1 GO:0005506 ... P05326 34417180
    12 6zaj:A (1.5301) BS01 ACV 1.21.3.1 GO:0005506 ... P05326 34417180
    13 6zak:A (1.54) BS01 ACV 1.21.3.1 GO:0005506 ... P05326 N/A
    14 6zal:A (1.83) BS01 ACV 1.21.3.1 GO:0005506 ... P05326 34417180
    15 6zam:A (1.55) BS04 ACV 1.21.3.1 GO:0005506 ... P05326 34417180
    16 6zan:A (1.35) BS02 ACV 1.21.3.1 GO:0005506 ... P05326 34417180
    17 6zap:A (1.36) BS01 ACV 1.21.3.1 GO:0005506 ... P05326 34417180
    18 6zw8:A (1.22) BS01 ACV 1.21.3.1 GO:0005506 ... P05326 34417180
    19 7poy:A (1.75) BS02 ACV 1.21.3.1 GO:0005506 ... P05326 35835215
    20 7psw:A (1.21) BS02 ACV 1.21.3.1 GO:0005506 ... P05326 35835215
    21 7zoe:A (1.5) BS01 ACV 1.21.3.1 GO:0005506 ... P05326 N/A
    22 8a4g:A (1.97) BS01 ACV 1.21.3.1 GO:0005506 ... P05326 N/A
    23 8ali:A (1.6) BS01 ACV 1.21.3.1 GO:0005506 ... P05326 N/A
    24 8alj:A (1.68) BS01 ACV 1.21.3.1 GO:0005506 ... P05326 N/A
    25 8bb9:A (1.68) BS01 ACV 1.21.3.1 GO:0005506 ... P05326 N/A
    26 8bba:A (1.5) BS01 ACV 1.21.3.1 GO:0005506 ... P05326 N/A
    27 8bbb:A (1.57) BS01 ACV 1.21.3.1 GO:0005506 ... P05326 N/A
    28 8bbc:A (1.71) BS01 ACV 1.21.3.1 GO:0005506 ... P05326 N/A
    29 8bbd:A (1.81) BS01 ACV 1.21.3.1 GO:0005506 ... P05326 N/A
    30 8bsv:A (1.53) BS01 ACV 1.21.3.1 GO:0005506 ... P05326 N/A
    31 8bsw:A (1.58) BS01 ACV 1.21.3.1 GO:0005506 ... P05326 N/A
    32 8bsx:A (1.38) BS01 ACV 1.21.3.1 GO:0005506 ... P05326 N/A
    33 8bsy:A (1.4) BS01 ACV 1.21.3.1 GO:0005506 ... P05326 N/A
    34 8p47:A (1.56) BS01 ACV 1.21.3.1 GO:0005737 ... P05326 N/A
    35 8p48:A (1.63) BS01 ACV 1.21.3.1 GO:0005737 ... P05326 N/A
    36 8ptv:A (1.6) BS02 ACV N/A GO:0005737 ... P05326 N/A
    37 8py5:A (1.85) BS01 ACV N/A N/A P05326 N/A
    38 8py6:A (1.52) BS02 ACV N/A N/A P05326 N/A
    39 8py7:A (1.49) BS01 ACV N/A N/A P05326 N/A
    40 8py8:A (1.46) BS02 ACV N/A N/A P05326 N/A
    41 8py9:A (1.5) BS01 ACV N/A N/A P05326 N/A
    42 8pya:A (1.5) BS01 ACV N/A N/A P05326 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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