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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 194 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1agm:A (2.3) BS05 AC1 3.2.1.3 GO:0004339 ... P69327 8195212
    2 1agm:A (2.3) BS07 AC1 3.2.1.3 GO:0004339 ... P69327 8195212
    3 1b2y:A (3.2) BS02 AC1 3.2.1.1 GO:0003824 ... P04746 10657258
    4 1ded:A (2.0) BS02 AC1 2.4.1.19 GO:0003824 ... P05618 10731709
    5 1ded:A (2.0) BS04 AC1 2.4.1.19 GO:0003824 ... P05618 10731709
    6 1ded:B (2.0) BS02 AC1 2.4.1.19 GO:0003824 ... P05618 10731709
    7 1esw:A (1.9) BS03 AC1 2.4.1.25 GO:0004134 ... O87172 11082203
    8 1esw:A (1.9) BS05 AC1 2.4.1.25 GO:0004134 ... O87172 11082203
    9 1gah:A (2.0) BS05 AC1 3.2.1.3 GO:0004339 ... P69327 8679589
    10 1hx0:A (1.38) BS02 AC1 3.2.1.1 GO:0003824 ... P00690 11412124
    11 1hx0:A (1.38) BS04 AC1 3.2.1.1 GO:0003824 ... P00690 11412124
    12 1k1y:A (2.4) BS03 AC1 2.4.1.25 GO:0003824 ... O32462 12618437
    13 1kxh:A (2.3) BS03 AC1 3.2.1.1 GO:0003824 ... P29957 11914073
    14 1lf9:A (2.2) BS02 AC1 3.2.1.3 GO:0003824 ... O85672 12614608
    15 1lf9:B (2.2) BS02 AC1 3.2.1.3 GO:0003824 ... O85672 12614608
    16 1mxd:A (2.0) BS03 AC1 3.2.1.1 GO:0004553 ... Q7LYT7 12482867
    17 1mxd:A (2.0) BS05 AC1 3.2.1.1 GO:0004553 ... Q7LYT7 12482867
    18 1mxd:A (2.0) BS09 AC1 3.2.1.1 GO:0004553 ... Q7LYT7 12482867
    19 1mxg:A (1.6) BS02 AC1 3.2.1.1 GO:0004553 ... Q7LYT7 12482867
    20 1mxg:A (1.6) BS03 AC1 3.2.1.1 GO:0004553 ... Q7LYT7 12482867
    21 1ose:A (2.3) BS01 AC1 3.2.1.1 GO:0003824 ... P00690 8681972
    22 1ose:A (2.3) BS03 AC1 3.2.1.1 GO:0003824 ... P00690 8681972
    23 1ulv:A (2.42) BS02 AC1 3.2.1.70 GO:0003824 ... Q9LBQ9 14660574
    24 1w9x:A (2.1) BS02 AC1 3.2.1.1 GO:0004553 ... O82839 15681870
    25 1w9x:A (2.1) BS06 AC1 3.2.1.1 GO:0004553 ... O82839 15681870
    26 1xcw:A (2.0) BS02 AC1 3.2.1.1 GO:0003824 ... P04746 15736945
    27 1xcx:A (1.9) BS02 AC1 3.2.1.1 GO:0003824 ... P04746 15736945
    28 2ecp:A (2.95) BS01 AC1 2.4.1.1 GO:0004645 ... P00490 10220320
    29 2ecp:B (2.95) BS01 AC1 2.4.1.1 GO:0004645 ... P00490 10220320
    30 2f6d:A (1.6) BS03 AC1 3.2.1.3 GO:0000272 ... P08017 16649993
    31 2f6d:A (1.6) BS05 AC1 3.2.1.3 GO:0000272 ... P08017 16649993
    32 2owc:A (2.05) BS02 AC1 2.4.1.25 GO:0004134 ... O87172 17420245
    33 2oww:A (2.2) BS02 AC1 2.4.1.25 GO:0004134 ... O87172 17420245
    34 2qmj:A (1.9) BS01 AC1 3.2.1.20 GO:0003824 ... O43451 18036614
    35 2qpu:B (1.7) BS02 AC1 3.2.1.1 GO:0004556 ... P00693 17803687
    36 2x2i:A (2.6) BS02 AC1 4.2.2.13 GO:0003824 ... Q9STC1 23902768
    37 2x2i:A (2.6) BS03 AC1 4.2.2.13 GO:0003824 ... Q9STC1 23902768
    38 2x2i:B (2.6) BS02 AC1 4.2.2.13 GO:0003824 ... Q9STC1 23902768
    39 2x2i:B (2.6) BS03 AC1 4.2.2.13 GO:0003824 ... Q9STC1 23902768
    40 2x2i:C (2.6) BS02 AC1 4.2.2.13 GO:0003824 ... Q9STC1 23902768
    41 2x2i:C (2.6) BS03 AC1 4.2.2.13 GO:0003824 ... Q9STC1 23902768
    42 2x2i:D (2.6) BS02 AC1 4.2.2.13 GO:0003824 ... Q9STC1 23902768
    43 2x2i:D (2.6) BS03 AC1 4.2.2.13 GO:0003824 ... Q9STC1 23902768
    44 2xff:A (1.309) BS01 AC1 3.2.1.2 GO:0000272 ... P16098 21085740
    45 2zq0:A (1.6) BS02 AC1 3.2.1.3 GO:0000272 ... G8JZS4 18981178
    46 2zq0:B (1.6) BS02 AC1 3.2.1.3 GO:0000272 ... G8JZS4 18981178
    47 3aic:A (3.11) BS01 AC1 2.4.1.5 GO:0009250 ... P13470 21354427
    48 3aic:B (3.11) BS01 AC1 2.4.1.5 GO:0009250 ... P13470 21354427
    49 3aic:C (3.11) BS01 AC1 2.4.1.5 GO:0009250 ... P13470 21354427
    50 3aic:D (3.11) BS01 AC1 2.4.1.5 GO:0009250 ... P13470 21354427
    51 3aic:E (3.11) BS01 AC1 2.4.1.5 GO:0009250 ... P13470 21354427
    52 3aic:F (3.11) BS01 AC1 2.4.1.5 GO:0009250 ... P13470 21354427
    53 3aic:G (3.11) BS01 AC1 2.4.1.5 GO:0009250 ... P13470 21354427
    54 3aic:H (3.11) BS01 AC1 2.4.1.5 GO:0009250 ... P13470 21354427
    55 3bc9:A (1.35) BS08 AC1 3.2.1.98 GO:0004553 ... B8CZ54 18387632
    56 3jyr:A (1.75) BS03 AC1 ? GO:0008643 ... P19576 20132828
    57 3jzj:A (1.4) BS03 AC1 ? GO:0015768 ... B0B0V1 20132828
    58 3k8m:A (2.5) BS02 AC1 3.2.1.1 GO:0000272 ... Q8A1G3 20159465
    59 3k8m:A (2.5) BS04 AC1 3.2.1.1 GO:0000272 ... Q8A1G3 20159465
    60 3k8m:A (2.5) BS06 AC1 3.2.1.1 GO:0000272 ... Q8A1G3 20159465
    61 3k8m:B (2.5) BS02 AC1 3.2.1.1 GO:0000272 ... Q8A1G3 20159465
    62 3k8m:B (2.5) BS04 AC1 3.2.1.1 GO:0000272 ... Q8A1G3 20159465
    63 3k8m:B (2.5) BS06 AC1 3.2.1.1 GO:0000272 ... Q8A1G3 20159465
    64 3pha:A (2.173) BS01 AC1 3.2.1.- GO:0003824 ... A5ZY13 N/A
    65 3pha:B (2.173) BS01 AC1 3.2.1.- GO:0003824 ... A5ZY13 N/A
    66 3pha:C (2.173) BS01 AC1 3.2.1.- GO:0003824 ... A5ZY13 N/A
    67 3pha:D (2.173) BS02 AC1 3.2.1.- GO:0003824 ... A5ZY13 N/A
    68 3poc:A (1.99) BS01 AC1 3.2.1.- GO:0003824 ... A5ZY13 N/A
    69 3poc:B (1.99) BS03 AC1 3.2.1.- GO:0003824 ... A5ZY13 N/A
    70 3top:A (2.881) BS01 AC1 3.2.1.20 GO:0003824 ... O43451 22058037
    71 3top:B (2.881) BS02 AC1 3.2.1.20 GO:0003824 ... O43451 22058037
    72 3w37:A (1.7) BS02 AC1 3.2.1.20 GO:0003824 ... L0N7E5 23687304
    73 3wel:A (1.84) BS02 AC1 3.2.1.20 GO:0003824 ... L0N7E5 25451917
    74 3wem:A (2.591) BS02 AC1 3.2.1.20 GO:0003824 ... L0N7E5 25451917
    75 3wen:A (2.59) BS02 AC1 3.2.1.20 GO:0003824 ... L0N7E5 25451917
    76 3weo:A (1.45) BS04 AC1 3.2.1.20 GO:0003824 ... L0N7E5 25451917
    77 3zoa:A (1.85) BS01 AC1 3.2.1.1
    5.4.99.16
    GO:0000023 ... A0R6E0 23735230
    78 4b9z:A (2.0) BS01 AC1 2.4.1.161 GO:0003824 ... B3PEE6 23132856
    79 4bqf:A (2.35) BS02 AC1 2.4.1.1 GO:0004645 ... Q9SD76 N/A
    80 4bqf:B (2.35) BS02 AC1 2.4.1.1 GO:0004645 ... Q9SD76 N/A
    81 4uac:A (1.6) BS03 AC1 N/A N/A N/A 25388295
    82 5clt:A (2.79) BS02 AC1 2.4.1.18 GO:0003824 ... Q04446 N/A
    83 5clt:B (2.79) BS02 AC1 2.4.1.18 GO:0003824 ... Q04446 N/A
    84 5clt:C (2.79) BS02 AC1 2.4.1.18 GO:0003824 ... Q04446 N/A
    85 5csy:B (2.05) BS03 AC1 2.4.1.25 GO:0000025 ... Q9LV91 26504082
    86 5hqa:A (1.747) BS02 AC1 ? GO:0030246 ... A0A0Y0DFX2 27645700
    87 5lrb:B (2.9) BS02 AC1 2.4.1.1 GO:0004645 ... F2E0G2 28407006
    88 5nn8:A (2.45) BS01 AC1 3.2.1.20 GO:0000023 ... P10253 29061980
    89 5nn8:A (2.45) BS02 AC1 3.2.1.20 GO:0000023 ... P10253 29061980
    90 5x7p:A (2.4) BS02 AC1 '2.4.1.-
    3.2.1.20'
    GO:0003824 ... A0A193PKW5 28698247
    91 5x7p:A (2.4) BS04 AC1 '2.4.1.-
    3.2.1.20'
    GO:0003824 ... A0A193PKW5 28698247
    92 5x7p:A (2.4) BS05 AC1 '2.4.1.-
    3.2.1.20'
    GO:0003824 ... A0A193PKW5 28698247
    93 5x7p:A (2.4) BS06 AC1 '2.4.1.-
    3.2.1.20'
    GO:0003824 ... A0A193PKW5 28698247
    94 5x7p:A (2.4) BS08 AC1 '2.4.1.-
    3.2.1.20'
    GO:0003824 ... A0A193PKW5 28698247
    95 5x7p:B (2.4) BS02 AC1 '2.4.1.-
    3.2.1.20'
    GO:0003824 ... A0A193PKW5 28698247
    96 5x7p:B (2.4) BS04 AC1 '2.4.1.-
    3.2.1.20'
    GO:0003824 ... A0A193PKW5 28698247
    97 5x7p:B (2.4) BS06 AC1 '2.4.1.-
    3.2.1.20'
    GO:0003824 ... A0A193PKW5 28698247
    98 5x7p:B (2.4) BS07 AC1 '2.4.1.-
    3.2.1.20'
    GO:0003824 ... A0A193PKW5 28698247
    99 5x7p:B (2.4) BS08 AC1 '2.4.1.-
    3.2.1.20'
    GO:0003824 ... A0A193PKW5 28698247
    100 5x7q:A (1.95) BS12 AC1 '2.4.1.-
    3.2.1.20'
    GO:0003824 ... A0A193PKW5 28698247
    101 5x7q:B (1.95) BS11 AC1 '2.4.1.-
    3.2.1.20'
    GO:0003824 ... A0A193PKW5 28698247
    102 5x7r:A (1.95) BS08 AC1 '2.4.1.-
    3.2.1.20'
    GO:0003824 ... A0A193PKW5 28698247
    103 5x7r:B (1.95) BS06 AC1 '2.4.1.-
    3.2.1.20'
    GO:0003824 ... A0A193PKW5 28698247
    104 6ag0:A (2.2) BS07 AC1 3.2.1.1 GO:0004553 ... Q9KWY6 31325505
    105 6ag0:A (2.2) BS09 AC1 3.2.1.1 GO:0004553 ... Q9KWY6 31325505
    106 6ag0:A (2.2) BS11 AC1 3.2.1.1 GO:0004553 ... Q9KWY6 31325505
    107 6ag0:C (2.2) BS07 AC1 3.2.1.1 GO:0004553 ... Q9KWY6 31325505
    108 6ag0:C (2.2) BS09 AC1 3.2.1.1 GO:0004553 ... Q9KWY6 31325505
    109 6fhw:A (3.6) BS02 AC1 3.2.1.3 GO:0000272 ... Q03045 29717717
    110 6fhw:B (3.6) BS02 AC1 3.2.1.3 GO:0000272 ... Q03045 29717717
    111 6gne:A (2.55) BS02 AC1 2.4.1.21 GO:0004373 ... Q0WVX5 30123236
    112 6gne:B (2.55) BS02 AC1 2.4.1.21 GO:0004373 ... Q0WVX5 30123236
    113 6gnf:A (2.2) BS03 AC1 2.4.1.21
    2.4.1.242
    GO:0000166 ... V5SNJ5 30123236
    114 6gnf:C (2.2) BS03 AC1 2.4.1.21
    2.4.1.242
    GO:0000166 ... V5SNJ5 30123236
    115 6gng:A (2.95) BS03 AC1 ? GO:0000166 ... A8V967 30123236
    116 6gng:B (2.95) BS03 AC1 ? GO:0000166 ... A8V967 30123236
    117 6gxv:A (2.07) BS04 AC1 ? GO:0004553 ... A0A3P8MUS3 30644839
    118 6gxv:A (2.07) BS06 AC1 ? GO:0004553 ... A0A3P8MUS3 30644839
    119 6gxv:B (2.07) BS04 AC1 ? GO:0004553 ... A0A3P8MUS3 30644839
    120 6gxv:B (2.07) BS06 AC1 ? GO:0004553 ... A0A3P8MUS3 30644839
    121 6lge:A (1.75) BS03 AC1 3.2.1.20 GO:0005975 ... A0A077JI83 32381508
    122 6lge:B (1.75) BS03 AC1 3.2.1.20 GO:0005975 ... A0A077JI83 32381508
    123 6lx1:A (2.03) BS02 AC1 2.4.1.25 GO:0004134 ... Q06801 32808707
    124 6m6t:A (2.75) BS02 AC1 2.4.1.25 GO:0004134 ... A0A0E1EIJ0 33762620
    125 6m6t:A (2.75) BS04 AC1 2.4.1.25 GO:0004134 ... A0A0E1EIJ0 33762620
    126 6m6t:B (2.75) BS02 AC1 2.4.1.25 GO:0004134 ... A0A0E1EIJ0 33762620
    127 6m6t:B (2.75) BS03 AC1 2.4.1.25 GO:0004134 ... A0A0E1EIJ0 33762620
    128 6m6t:C (2.75) BS02 AC1 2.4.1.25 GO:0004134 ... A0A0E1EIJ0 33762620
    129 6m6t:C (2.75) BS04 AC1 2.4.1.25 GO:0004134 ... A0A0E1EIJ0 33762620
    130 6m6t:D (2.75) BS02 AC1 2.4.1.25 GO:0004134 ... A0A0E1EIJ0 33762620
    131 6m6t:D (2.75) BS04 AC1 2.4.1.25 GO:0004134 ... A0A0E1EIJ0 33762620
    132 6m6t:E (2.75) BS02 AC1 2.4.1.25 GO:0004134 ... A0A0E1EIJ0 33762620
    133 6m6t:E (2.75) BS05 AC1 2.4.1.25 GO:0004134 ... A0A0E1EIJ0 33762620
    134 6m6t:F (2.75) BS02 AC1 2.4.1.25 GO:0004134 ... A0A0E1EIJ0 33762620
    135 6m6t:F (2.75) BS03 AC1 2.4.1.25 GO:0004134 ... A0A0E1EIJ0 33762620
    136 6m6t:G (2.75) BS03 AC1 2.4.1.25 GO:0004134 ... A0A0E1EIJ0 33762620
    137 6m6t:G (2.75) BS04 AC1 2.4.1.25 GO:0004134 ... A0A0E1EIJ0 33762620
    138 6m6t:H (2.75) BS02 AC1 2.4.1.25 GO:0004134 ... A0A0E1EIJ0 33762620
    139 6m6t:H (2.75) BS03 AC1 2.4.1.25 GO:0004134 ... A0A0E1EIJ0 33762620
    140 6sao:A (1.2) BS03 AC1 N/A GO:0004556 ... N/A 31623309
    141 6sao:A (1.2) BS05 AC1 N/A GO:0004556 ... N/A 31623309
    142 6sau:A (1.35) BS03 AC1 N/A GO:0004556 ... N/A 31623309
    143 6sau:B (1.35) BS03 AC1 N/A GO:0004556 ... N/A 31623309
    144 6sau:B (1.35) BS05 AC1 N/A GO:0004556 ... N/A 31623309
    145 6toz:A (1.94) BS02 AC1 3.2.1.1 GO:0004553 ... I3P686 33058974
    146 6toz:A (1.94) BS04 AC1 3.2.1.1 GO:0004553 ... I3P686 33058974
    147 6wb4:A (2.593) BS01 AC1 N/A GO:0016301 ... N/A 34819672
    148 6wb4:B (2.593) BS02 AC1 N/A GO:0016301 ... N/A 34819672
    149 6wb5:A (3.102) BS03 AC1 N/A GO:0016301 ... N/A 34819672
    150 6wb5:B (3.102) BS03 AC1 N/A GO:0016301 ... N/A 34819672
    151 6wb7:A (2.44) BS03 AC1 2.7.1.187 GO:0005829 ... Q8RMD4 34819672
    152 6wb7:B (2.44) BS02 AC1 2.7.1.187 GO:0005829 ... Q8RMD4 34819672
    153 6wb7:C (2.44) BS03 AC1 2.7.1.187 GO:0005829 ... Q8RMD4 34819672
    154 6wb7:D (2.44) BS02 AC1 2.7.1.187 GO:0005829 ... Q8RMD4 34819672
    155 7dch:A (1.692) BS03 AC1 N/A GO:0004553 ... N/A 34342279
    156 7p01:A (2.12) BS03 AC1 N/A GO:0005975 ... N/A 34682239
    157 7p01:A (2.12) BS06 AC1 N/A GO:0005975 ... N/A 34682239
    158 7p01:B (2.12) BS02 AC1 N/A GO:0005975 ... N/A 34682239
    159 7p39:A (2.9) BS01 AC1 2.4.1.5 GO:0009250 ... A0A1Z2RUH3 34708648
    160 7p39:B (2.9) BS01 AC1 2.4.1.5 GO:0009250 ... A0A1Z2RUH3 34708648
    161 7u3d:A (2.4) BS03 AC1 ? GO:0000166 ... A0A5P2ALW6 36192422
    162 7u3d:B (2.4) BS03 AC1 ? GO:0000166 ... A0A5P2ALW6 36192422
    163 7u3d:C (2.4) BS03 AC1 ? GO:0000166 ... A0A5P2ALW6 36192422
    164 7u3d:F (2.4) BS03 AC1 ? GO:0000166 ... A0A5P2ALW6 36192422
    165 8cqf:A (2.05) BS02 AC1 3.2.1.1 GO:0003824 ... P29957 37379391
    166 8cqf:A (2.05) BS03 AC1 3.2.1.1 GO:0003824 ... P29957 37379391
    167 8cqf:A (2.05) BS04 AC1 3.2.1.1 GO:0003824 ... P29957 37379391
    168 8cqf:A (2.05) BS06 AC1 3.2.1.1 GO:0003824 ... P29957 37379391
    169 8dl2:A (1.99) BS02 AC1 N/A GO:0005975 ... N/A 37500984
    170 8dl2:A (1.99) BS04 AC1 N/A GO:0005975 ... N/A 37500984
    171 8dl2:A (1.99) BS06 AC1 N/A GO:0005975 ... N/A 37500984
    172 8dl2:B (1.99) BS02 AC1 N/A GO:0005975 ... N/A 37500984
    173 8dl2:B (1.99) BS04 AC1 N/A GO:0005975 ... N/A 37500984
    174 8dl2:B (1.99) BS06 AC1 N/A GO:0005975 ... N/A 37500984
    175 8dl2:C (1.99) BS02 AC1 N/A GO:0005975 ... N/A 37500984
    176 8dl2:C (1.99) BS05 AC1 N/A GO:0005975 ... N/A 37500984
    177 8dl2:C (1.99) BS07 AC1 N/A GO:0005975 ... N/A 37500984
    178 8dl2:D (1.99) BS02 AC1 N/A GO:0005975 ... N/A 37500984
    179 8dl2:D (1.99) BS04 AC1 N/A GO:0005975 ... N/A 37500984
    180 8dl2:D (1.99) BS06 AC1 N/A GO:0005975 ... N/A 37500984
    181 8fjc:A (2.5) BS02 AC1 2.4.1.5 GO:0009250 ... P08987 37158310
    182 8fjc:B (2.5) BS02 AC1 2.4.1.5 GO:0009250 ... P08987 37158310
    183 8fk4:A (3.25) BS02 AC1 2.4.1.5 GO:0009250 ... P08987 37158310
    184 8fk4:B (3.25) BS02 AC1 2.4.1.5 GO:0009250 ... P08987 37158310
    185 8fk4:C (3.25) BS02 AC1 2.4.1.5 GO:0009250 ... P08987 37158310
    186 8fk4:D (3.25) BS01 AC1 2.4.1.5 GO:0009250 ... P08987 37158310
    187 8fk4:E (3.25) BS03 AC1 2.4.1.5 GO:0009250 ... P08987 37158310
    188 8fk4:F (3.25) BS02 AC1 2.4.1.5 GO:0009250 ... P08987 37158310
    189 8fk4:G (3.25) BS01 AC1 2.4.1.5 GO:0009250 ... P08987 37158310
    190 8fk4:H (3.25) BS02 AC1 2.4.1.5 GO:0009250 ... P08987 37158310
    191 8hw3:A (2.66) BS04 AC1 2.4.1.5 GO:0009250 ... A0A848PDI7 38427803
    192 8hw3:B (2.66) BS04 AC1 2.4.1.5 GO:0009250 ... A0A848PDI7 38427803
    193 8yie:A (1.7) BS01 AC1 N/A GO:0004556 ... D2YYD7 N/A
    194 8yie:B (1.7) BS01 AC1 N/A GO:0004556 ... D2YYD7 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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