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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 343 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 2okj:A (2.3) BS01 ABU 4.1.1.15 GO:0016830 ... Q99259 17384644
    2 2okj:B (2.3) BS01 ABU 4.1.1.15 GO:0016830 ... Q99259 17384644
    3 2okk:A (2.3) BS01 ABU 4.1.1.15 GO:0016830 ... Q05329 17384644
    4 2okk:A (2.3) BS02 ABU 4.1.1.15 GO:0016830 ... Q05329 17384644
    5 3ip9:A (1.8) BS01 ABU ? GO:0006865 ... Q7CX36 20630861 MOAD: Kd=2.4uM
    PDBbind: -logKd/Ki=5.62, Kd=2.4uM
    6 3usu:A (2.46) BS03 ABU ? GO:0030246 ... H2L2M6 N/A
    7 3usu:A (2.46) BS04 ABU ? GO:0030246 ... H2L2M6 N/A
    8 3usu:B (2.46) BS03 ABU ? GO:0030246 ... H2L2M6 N/A
    9 3usu:C (2.46) BS03 ABU ? GO:0030246 ... H2L2M6 N/A
    10 3usu:D (2.46) BS03 ABU ? GO:0030246 ... H2L2M6 N/A
    11 3usu:E (2.46) BS03 ABU ? GO:0030246 ... H2L2M6 N/A
    12 3usu:E (2.46) BS04 ABU ? GO:0030246 ... H2L2M6 N/A
    13 3usu:F (2.46) BS03 ABU ? GO:0030246 ... H2L2M6 N/A
    14 3usu:G (2.46) BS03 ABU ? GO:0030246 ... H2L2M6 N/A
    15 3usu:H (2.46) BS02 ABU ? GO:0030246 ... H2L2M6 N/A
    16 4atq:A (2.75) BS02 ABU 2.6.1.19 GO:0003867 ... A1R958 23027742
    17 4atq:B (2.75) BS01 ABU 2.6.1.19 GO:0003867 ... A1R958 23027742
    18 4atq:B (2.75) BS03 ABU 2.6.1.19 GO:0003867 ... A1R958 23027742
    19 4atq:C (2.75) BS02 ABU 2.6.1.19 GO:0003867 ... A1R958 23027742
    20 4atq:D (2.75) BS02 ABU 2.6.1.19 GO:0003867 ... A1R958 23027742
    21 4atq:E (2.75) BS02 ABU 2.6.1.19 GO:0003867 ... A1R958 23027742
    22 4atq:F (2.75) BS01 ABU 2.6.1.19 GO:0003867 ... A1R958 23027742
    23 4atq:F (2.75) BS03 ABU 2.6.1.19 GO:0003867 ... A1R958 23027742
    24 4atq:G (2.75) BS02 ABU 2.6.1.19 GO:0003867 ... A1R958 23027742
    25 4atq:G (2.75) BS03 ABU 2.6.1.19 GO:0003867 ... A1R958 23027742
    26 4atq:H (2.75) BS02 ABU 2.6.1.19 GO:0003867 ... A1R958 23027742
    27 4atq:I (2.75) BS02 ABU 2.6.1.19 GO:0003867 ... A1R958 23027742
    28 4atq:J (2.75) BS02 ABU 2.6.1.19 GO:0003867 ... A1R958 23027742
    29 4atq:J (2.75) BS03 ABU 2.6.1.19 GO:0003867 ... A1R958 23027742
    30 4atq:K (2.75) BS03 ABU 2.6.1.19 GO:0003867 ... A1R958 23027742
    31 4atq:L (2.75) BS02 ABU 2.6.1.19 GO:0003867 ... A1R958 23027742
    32 4euo:A (1.28) BS01 ABU ? GO:0042597 ... A9CGA5 23043322 PDBbind: -logKd/Ki=5.05, Kd=9uM
    33 4i30:A (1.89) BS03 ABU ? GO:0005515 ... P81460 N/A
    34 4k17:C (2.895) BS01 ABU ? N/A Q6EDY6 24071777
    35 4m3c:A (2.5) BS03 ABU ? GO:0030246 ... H2L2M6 N/A
    36 4m3c:A (2.5) BS04 ABU ? GO:0030246 ... H2L2M6 N/A
    37 4m3c:B (2.5) BS03 ABU ? GO:0030246 ... H2L2M7 N/A
    38 4m3c:C (2.5) BS03 ABU ? GO:0030246 ... H2L2M6 N/A
    39 4m3c:D (2.5) BS01 ABU ? GO:0030246 ... H2L2M7 N/A
    40 4m3c:D (2.5) BS04 ABU ? GO:0030246 ... H2L2M7 N/A
    41 4m3c:E (2.5) BS03 ABU ? GO:0005509 ... P86352 N/A
    42 4m3c:H (2.5) BS03 ABU ? GO:0005509 ... P86353 N/A
    43 4ms3:A (2.5) BS01 ABU ? GO:0004965 ... Q9UBS5 24305054 BindingDB: IC50=25nM, EC50=530nM
    44 4pcr:A (2.15) BS03 ABU ? GO:0005537 ... P55915 N/A
    45 4pcr:A (2.15) BS04 ABU ? GO:0005537 ... P55915 N/A
    46 4rlg:D (1.901) BS02 ABU 4.1.1.15 GO:0005737 ... D1C7D8 N/A
    47 4rlg:D (1.901) BS03 ABU 4.1.1.15 GO:0005737 ... D1C7D8 N/A
    48 5ltv:A (2.31) BS01 ABU ? N/A Q9HW93 N/A
    49 5ltv:B (2.31) BS01 ABU ? N/A Q9HW93 N/A
    50 5ltv:D (2.31) BS01 ABU ? N/A Q9HW93 N/A
    51 5ltv:E (2.31) BS01 ABU ? N/A Q9HW93 N/A
    52 5t4j:B (2.231) BS02 ABU ? GO:0009058 ... P94426 28348215
    53 5x03:A (2.0) BS02 ABU ? GO:0009058 ... P94426 28412355
    54 6a96:B (3.51) BS01 ABU ? GO:0004888 ... P28472 30140029
    55 6d6t:A (3.86) BS01 ABU ? GO:0004888 ... P47870 29950725
    56 6d6t:B (3.86) BS01 ABU ? GO:0004888 ... P14867 29950725 BindingDB: EC50=80000nM, Ki=21.37nM
    57 6d6t:C (3.86) BS01 ABU ? GO:0004888 ... P47870 29950725
    58 6d6t:D (3.86) BS01 ABU ? GO:0004888 ... P14867 29950725 BindingDB: EC50=80000nM, Ki=21.37nM
    59 6d6u:A (3.92) BS01 ABU ? GO:0004888 ... P47870 29950725
    60 6d6u:B (3.92) BS01 ABU ? GO:0004888 ... P14867 29950725 BindingDB: EC50=80000nM, Ki=21.37nM
    61 6d6u:C (3.92) BS01 ABU ? GO:0004888 ... P47870 29950725
    62 6d6u:D (3.92) BS01 ABU ? GO:0004888 ... P14867 29950725 BindingDB: EC50=80000nM, Ki=21.37nM
    63 6dw0:A (3.8) BS01 ABU ? GO:0004888 ... P62813 30044221 BindingDB: EC50=10000nM
    64 6dw0:B (3.8) BS01 ABU ? GO:0004888 ... P15431 30044221
    65 6dw0:B (3.8) BS02 ABU ? GO:0004888 ... P15431 30044221
    66 6dw0:C (3.8) BS01 ABU ? GO:0004888 ... P62813 30044221 BindingDB: EC50=10000nM
    67 6dw0:E (3.8) BS01 ABU ? GO:0004888 ... P15431 30044221
    68 6dw1:A (3.1) BS01 ABU ? GO:0004888 ... P62813 30044221 BindingDB: EC50=10000nM
    69 6dw1:A (3.1) BS02 ABU ? GO:0004888 ... P62813 30044221 BindingDB: EC50=10000nM
    70 6dw1:B (3.1) BS01 ABU ? GO:0004888 ... P15431 30044221
    71 6dw1:B (3.1) BS02 ABU ? GO:0004888 ... P15431 30044221
    72 6dw1:C (3.1) BS01 ABU ? GO:0004888 ... P62813 30044221 BindingDB: EC50=10000nM
    73 6dw1:E (3.1) BS01 ABU ? GO:0004888 ... P15431 30044221
    74 6eb3:C (2.35) BS01 ABU N/A N/A N/A N/A
    75 6eb3:D (2.35) BS01 ABU N/A N/A N/A N/A
    76 6huj:A (3.04) BS03 ABU ? GO:0004888 ... P08219
    P14867    		 30602790
    77 6huj:B (3.04) BS01 ABU ? GO:0004888 ... P28472 30602790
    78 6huj:D (3.04) BS03 ABU ? GO:0004888 ... P08219
    P14867    		 30602790
    79 6huj:E (3.04) BS02 ABU ? GO:0004888 ... P28472 30602790
    80 6huo:A (3.26) BS01 ABU ? GO:0004888 ... P08219
    P14867    		 30602790
    81 6huo:B (3.26) BS01 ABU ? GO:0004888 ... P28472 30602790
    82 6huo:D (3.26) BS03 ABU ? GO:0004888 ... P08219
    P14867    		 30602790
    83 6huo:E (3.26) BS01 ABU ? GO:0004888 ... P28472 30602790
    84 6hup:A (3.58) BS02 ABU ? GO:0004888 ... P08219
    P14867    		 30602790
    85 6hup:B (3.58) BS01 ABU ? GO:0004888 ... P28472 30602790
    86 6hup:D (3.58) BS03 ABU ? GO:0004888 ... P08219
    P14867    		 30602790
    87 6hup:E (3.58) BS01 ABU ? GO:0004888 ... P28472 30602790
    88 6jdw:A (2.5) BS01 ABU 2.1.4.1 GO:0005515 ... P50440 9915841
    89 6plo:A (3.3) BS01 ABU ? GO:0004888 ... O93430 33567265
    90 6plo:A (3.3) BS02 ABU ? GO:0004888 ... O93430 33567265
    91 6plo:B (3.3) BS01 ABU ? GO:0004888 ... O93430 33567265
    92 6plo:B (3.3) BS02 ABU ? GO:0004888 ... O93430 33567265
    93 6plo:C (3.3) BS01 ABU ? GO:0004888 ... O93430 33567265
    94 6plo:C (3.3) BS02 ABU ? GO:0004888 ... O93430 33567265
    95 6plo:D (3.3) BS01 ABU ? GO:0004888 ... O93430 33567265
    96 6plo:D (3.3) BS02 ABU ? GO:0004888 ... O93430 33567265
    97 6plo:E (3.3) BS01 ABU ? GO:0004888 ... O93430 33567265
    98 6plo:E (3.3) BS02 ABU ? GO:0004888 ... O93430 33567265
    99 6plp:A (3.3) BS01 ABU ? GO:0004888 ... O93430 33567265
    100 6plp:A (3.3) BS02 ABU ? GO:0004888 ... O93430 33567265
    101 6plp:B (3.3) BS01 ABU ? GO:0004888 ... O93430 33567265
    102 6plp:B (3.3) BS02 ABU ? GO:0004888 ... O93430 33567265
    103 6plp:C (3.3) BS01 ABU ? GO:0004888 ... O93430 33567265
    104 6plp:C (3.3) BS02 ABU ? GO:0004888 ... O93430 33567265
    105 6plp:D (3.3) BS01 ABU ? GO:0004888 ... O93430 33567265
    106 6plp:D (3.3) BS02 ABU ? GO:0004888 ... O93430 33567265
    107 6plp:E (3.3) BS01 ABU ? GO:0004888 ... O93430 33567265
    108 6plp:E (3.3) BS02 ABU ? GO:0004888 ... O93430 33567265
    109 6plq:A (3.4) BS01 ABU ? GO:0004888 ... O93430 33567265
    110 6plq:A (3.4) BS02 ABU ? GO:0004888 ... O93430 33567265
    111 6plq:B (3.4) BS01 ABU ? GO:0004888 ... O93430 33567265
    112 6plq:B (3.4) BS02 ABU ? GO:0004888 ... O93430 33567265
    113 6plq:C (3.4) BS01 ABU ? GO:0004888 ... O93430 33567265
    114 6plq:C (3.4) BS02 ABU ? GO:0004888 ... O93430 33567265
    115 6plq:D (3.4) BS01 ABU ? GO:0004888 ... O93430 33567265
    116 6plq:D (3.4) BS02 ABU ? GO:0004888 ... O93430 33567265
    117 6plq:E (3.4) BS01 ABU ? GO:0004888 ... O93430 33567265
    118 6plq:E (3.4) BS02 ABU ? GO:0004888 ... O93430 33567265
    119 6plu:A (3.3) BS01 ABU ? GO:0004888 ... O93430 33567265
    120 6plu:A (3.3) BS02 ABU ? GO:0004888 ... O93430 33567265
    121 6plu:B (3.3) BS01 ABU ? GO:0004888 ... O93430 33567265
    122 6plu:B (3.3) BS02 ABU ? GO:0004888 ... O93430 33567265
    123 6plu:C (3.3) BS01 ABU ? GO:0004888 ... O93430 33567265
    124 6plu:C (3.3) BS02 ABU ? GO:0004888 ... O93430 33567265
    125 6plu:D (3.3) BS01 ABU ? GO:0004888 ... O93430 33567265
    126 6plu:D (3.3) BS02 ABU ? GO:0004888 ... O93430 33567265
    127 6plu:E (3.3) BS01 ABU ? GO:0004888 ... O93430 33567265
    128 6plu:E (3.3) BS02 ABU ? GO:0004888 ... O93430 33567265
    129 6plv:A (3.3) BS01 ABU ? GO:0004888 ... O93430 33567265
    130 6plv:A (3.3) BS02 ABU ? GO:0004888 ... O93430 33567265
    131 6plv:B (3.3) BS01 ABU ? GO:0004888 ... O93430 33567265
    132 6plv:B (3.3) BS02 ABU ? GO:0004888 ... O93430 33567265
    133 6plv:C (3.3) BS01 ABU ? GO:0004888 ... O93430 33567265
    134 6plv:C (3.3) BS02 ABU ? GO:0004888 ... O93430 33567265
    135 6plv:D (3.3) BS01 ABU ? GO:0004888 ... O93430 33567265
    136 6plv:D (3.3) BS02 ABU ? GO:0004888 ... O93430 33567265
    137 6plv:E (3.3) BS01 ABU ? GO:0004888 ... O93430 33567265
    138 6plv:E (3.3) BS02 ABU ? GO:0004888 ... O93430 33567265
    139 6plw:A (3.0) BS01 ABU ? GO:0004888 ... O93430 33567265
    140 6plw:A (3.0) BS02 ABU ? GO:0004888 ... O93430 33567265
    141 6plw:B (3.0) BS01 ABU ? GO:0004888 ... O93430 33567265
    142 6plw:B (3.0) BS02 ABU ? GO:0004888 ... O93430 33567265
    143 6plw:C (3.0) BS01 ABU ? GO:0004888 ... O93430 33567265
    144 6plw:C (3.0) BS02 ABU ? GO:0004888 ... O93430 33567265
    145 6plw:D (3.0) BS01 ABU ? GO:0004888 ... O93430 33567265
    146 6plw:D (3.0) BS02 ABU ? GO:0004888 ... O93430 33567265
    147 6plw:E (3.0) BS01 ABU ? GO:0004888 ... O93430 33567265
    148 6plw:E (3.0) BS02 ABU ? GO:0004888 ... O93430 33567265
    149 6plx:A (2.9) BS01 ABU ? GO:0004888 ... O93430 33567265
    150 6plx:A (2.9) BS02 ABU ? GO:0004888 ... O93430 33567265
    151 6plx:B (2.9) BS01 ABU ? GO:0004888 ... O93430 33567265
    152 6plx:B (2.9) BS02 ABU ? GO:0004888 ... O93430 33567265
    153 6plx:C (2.9) BS01 ABU ? GO:0004888 ... O93430 33567265
    154 6plx:C (2.9) BS02 ABU ? GO:0004888 ... O93430 33567265
    155 6plx:D (2.9) BS01 ABU ? GO:0004888 ... O93430 33567265
    156 6plx:D (2.9) BS02 ABU ? GO:0004888 ... O93430 33567265
    157 6plx:E (2.9) BS01 ABU ? GO:0004888 ... O93430 33567265
    158 6plx:E (2.9) BS02 ABU ? GO:0004888 ... O93430 33567265
    159 6ply:A (2.9) BS01 ABU ? GO:0004888 ... O93430 33567265
    160 6ply:A (2.9) BS02 ABU ? GO:0004888 ... O93430 33567265
    161 6ply:B (2.9) BS01 ABU ? GO:0004888 ... O93430 33567265
    162 6ply:B (2.9) BS02 ABU ? GO:0004888 ... O93430 33567265
    163 6ply:C (2.9) BS01 ABU ? GO:0004888 ... O93430 33567265
    164 6ply:C (2.9) BS02 ABU ? GO:0004888 ... O93430 33567265
    165 6ply:D (2.9) BS01 ABU ? GO:0004888 ... O93430 33567265
    166 6ply:D (2.9) BS02 ABU ? GO:0004888 ... O93430 33567265
    167 6ply:E (2.9) BS01 ABU ? GO:0004888 ... O93430 33567265
    168 6ply:E (2.9) BS02 ABU ? GO:0004888 ... O93430 33567265
    169 6plz:A (3.0) BS01 ABU ? GO:0004888 ... O93430 33567265
    170 6plz:B (3.0) BS01 ABU ? GO:0004888 ... O93430 33567265
    171 6plz:B (3.0) BS02 ABU ? GO:0004888 ... O93430 33567265
    172 6plz:C (3.0) BS01 ABU ? GO:0004888 ... O93430 33567265
    173 6plz:C (3.0) BS02 ABU ? GO:0004888 ... O93430 33567265
    174 6plz:D (3.0) BS01 ABU ? GO:0004888 ... O93430 33567265
    175 6plz:D (3.0) BS02 ABU ? GO:0004888 ... O93430 33567265
    176 6plz:E (3.0) BS01 ABU ? GO:0004888 ... O93430 33567265
    177 6plz:E (3.0) BS02 ABU ? GO:0004888 ... O93430 33567265
    178 6ssi:A (2.59) BS01 ABU ? GO:0004888 ... P0C7B7 31990273
    179 6ssi:B (2.59) BS01 ABU ? GO:0004888 ... P0C7B7 31990273
    180 6ssi:C (2.59) BS01 ABU ? GO:0004888 ... P0C7B7 31990273
    181 6ssi:D (2.59) BS01 ABU ? GO:0004888 ... P0C7B7 31990273
    182 6ssi:E (2.59) BS01 ABU ? GO:0004888 ... P0C7B7 31990273
    183 6x3t:A (2.55) BS01 ABU ? GO:0004888 ... P47870 32879488
    184 6x3t:B (2.55) BS01 ABU ? GO:0004888 ... P14867 32879488 BindingDB: Ki=21.37nM, EC50=3802nM
    185 6x3t:C (2.55) BS01 ABU ? GO:0004888 ... P47870 32879488
    186 6x3t:D (2.55) BS02 ABU ? GO:0004888 ... P14867 32879488 BindingDB: Ki=21.37nM, EC50=3802nM
    187 6x3u:A (3.5) BS01 ABU ? GO:0004888 ... P47870 32879488
    188 6x3u:C (3.5) BS01 ABU ? GO:0004888 ... P47870 32879488
    189 6x3v:A (3.5) BS01 ABU ? GO:0004888 ... P47870 32879488
    190 6x3v:C (3.5) BS01 ABU ? GO:0004888 ... P47870 32879488
    191 6x3w:A (3.3) BS01 ABU ? GO:0004888 ... P47870 32879488
    192 6x3w:B (3.3) BS01 ABU ? GO:0004888 ... P14867 32879488 BindingDB: Ki=21.37nM, EC50=3802nM
    193 6x3w:C (3.3) BS02 ABU ? GO:0004888 ... P47870 32879488
    194 6x3w:D (3.3) BS02 ABU ? GO:0004888 ... P14867 32879488 BindingDB: Ki=21.37nM, EC50=3802nM
    195 6x3x:A (2.92) BS01 ABU ? GO:0004888 ... P47870 32879488
    196 6x3x:C (2.92) BS01 ABU ? GO:0004888 ... P47870 32879488
    197 6x3x:D (2.92) BS02 ABU ? GO:0004888 ... P14867 32879488 BindingDB: Ki=21.37nM, EC50=3802nM
    198 6x3z:A (3.23) BS01 ABU ? GO:0004888 ... P47870 32879488
    199 6x3z:B (3.23) BS01 ABU ? GO:0004888 ... P14867 32879488 BindingDB: Ki=21.37nM, EC50=3802nM
    200 6x3z:C (3.23) BS01 ABU ? GO:0004888 ... P47870 32879488
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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