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BioLiP
Download all results in tab-seperated text for 36 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1n6x:A (1.4) BS02 ABN 3.4.21.4 GO:0004175 ... P00760 12575941
    2 1n6y:A (1.4) BS02 ABN 3.4.21.4 GO:0004175 ... P00760 12575941
    3 1utj:A (1.83) BS01 ABN 3.4.21.4 GO:0004252 ... P35031 15044735 MOAD: Kd=0.144mM
    PDBbind: -logKd/Ki=3.84, Kd=0.144mM
    4 1utn:A (1.15) BS01 ABN 3.4.21.4 GO:0004252 ... P00760 15044735 MOAD: Kd=0.321mM
    PDBbind: -logKd/Ki=3.49, Kd=0.321mM
    5 1utn:A (1.15) BS02 ABN 3.4.21.4 GO:0004252 ... P00760 15044735 MOAD: Kd=0.321mM
    PDBbind: -logKd/Ki=3.49, Kd=0.321mM
    6 2bza:A (1.9) BS02 ABN 3.4.21.4 GO:0004175 ... P00760 10651279 MOAD: Ki=1.58mM
    PDBbind: -logKd/Ki=2.80, Ki=1.58mM
    7 2eus:A (1.55) BS02 ABN 1.11.1.5 GO:0004601 ... P00431 16490206
    8 2hxc:D (1.45) BS01 ABN 1.4.9.2 GO:0009308 ... P84887 17005560
    9 2hxc:D (1.45) BS02 ABN 1.4.9.2 GO:0009308 ... P84887 17005560
    10 2hxc:H (1.45) BS01 ABN 1.4.9.2 GO:0009308 ... P84887 17005560
    11 4ev5:A (2.25) BS02 ABN 1.4.3.21 GO:0005507 ... P12807 N/A
    12 4ev5:B (2.25) BS02 ABN 1.4.3.21 GO:0005507 ... P12807 N/A
    13 4ev5:C (2.25) BS02 ABN 1.4.3.21 GO:0005507 ... P12807 N/A
    14 4ev5:D (2.25) BS02 ABN 1.4.3.21 GO:0005507 ... P12807 N/A
    15 4ev5:E (2.25) BS02 ABN 1.4.3.21 GO:0005507 ... P12807 N/A
    16 4ev5:F (2.25) BS02 ABN 1.4.3.21 GO:0005507 ... P12807 N/A
    17 5mnk:A (0.799) BS02 ABN 3.4.21.4 GO:0004175 ... P00760 N/A
    18 5mnl:A (1.039) BS02 ABN 3.4.21.4 GO:0004175 ... P00760 N/A
    19 5mnm:A (0.98) BS02 ABN 3.4.21.4 GO:0004175 ... P00760 N/A
    20 5pa9:C (1.55) BS02 ABN 3.4.21.21 GO:0004252 ... P08709 N/A
    21 6t56:H (1.31) BS02 ABN 3.4.21.5 GO:0004252 ... P00734 N/A
    22 6t56:H (1.31) BS03 ABN 3.4.21.5 GO:0004252 ... P00734 N/A
    23 8p7e:A (1.5) BS01 ABN N/A N/A N/A N/A
    24 8p7e:A (1.5) BS02 ABN N/A N/A N/A N/A
    25 8p7e:A (1.5) BS03 ABN N/A N/A N/A N/A
    26 8p7e:A (1.5) BS04 ABN N/A N/A N/A N/A
    27 8p7e:B (1.5) BS01 ABN N/A N/A N/A N/A
    28 8p7e:B (1.5) BS02 ABN N/A N/A N/A N/A
    29 8p7e:B (1.5) BS03 ABN N/A N/A N/A N/A
    30 8p7e:B (1.5) BS04 ABN N/A N/A N/A N/A
    31 8pnu:A (2.12) BS01 ABN ? GO:0016020 ... O50216 38744914
    32 8pnu:B (2.12) BS02 ABN ? GO:0016020 ... O50216 38744914
    33 8pnu:C (2.12) BS02 ABN ? GO:0016020 ... O50216 38744914
    34 8pnu:G (2.12) BS01 ABN ? GO:0016020 ... O50216 38744914
    35 8pnu:H (2.12) BS02 ABN ? GO:0016020 ... O50216 38744914
    36 8pnu:I (2.12) BS02 ABN ? GO:0016020 ... O50216 38744914
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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