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BioLiP
Download all results in tab-seperated text for 12 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1mfa:L (1.7) BS01 ABE N/A N/A N/A 7517550 PDBbind: -logKd/Ki=5.04, Kd=9.1uM
    2 1mfb:H (2.1) BS02 ABE N/A N/A N/A 7689495
    3 1mfb:L (2.1) BS02 ABE N/A N/A N/A 7689495
    4 1mfc:H (2.1) BS02 ABE N/A N/A N/A 7689495
    5 1mfc:L (2.1) BS01 ABE N/A N/A N/A 7689495
    6 1mfd:H (2.1) BS02 ABE N/A N/A N/A 8172893 PDBbind: -logKd/Ki=5.31, Kd=4.9uM
    7 1mfd:L (2.1) BS01 ABE N/A N/A N/A 8172893 PDBbind: -logKd/Ki=5.31, Kd=4.9uM
    8 1mfe:H (2.0) BS01 ABE N/A N/A N/A 1713710
    9 1mfe:L (2.0) BS01 ABE N/A N/A N/A 1713710
    10 1tyx:A (1.8) BS05 ABE 3.2.1.- N/A P12528 8855221
    11 2j60:A (1.8) BS01 ABE ? N/A O75636 17215869
    12 2j60:B (1.8) BS01 ABE ? N/A O75636 17215869
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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