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BioLiP
Download all results in tab-seperated text for 36 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1fww:A (1.85) BS02 A5P 2.5.1.55 GO:0005737 ... O66496 19228070
    2 1fxq:A (1.8) BS02 A5P 2.5.1.55 GO:0005737 ... O66496 11115499
    3 1fxq:B (1.8) BS02 A5P 2.5.1.55 GO:0005737 ... O66496 11115499
    4 1fy6:A (1.89) BS02 A5P 2.5.1.55 GO:0005737 ... O66496 11115499
    5 1lrq:A (1.8) BS02 A5P 2.5.1.55 GO:0005737 ... O66496 12441100
    6 1t8x:A (1.8) BS02 A5P 2.5.1.55 GO:0005737 ... O66496 N/A
    7 1uj6:A (1.74) BS01 A5P 5.3.1.6 GO:0004751 ... Q72J47 13679361 MOAD: Ki=0.89mM
    PDBbind: -logKd/Ki=3.05, Ki=0.89mM
    8 2a2i:A (1.95) BS03 A5P 2.5.1.55 GO:0005737 ... O66496 19228070 MOAD: Kd=0.04uM
    9 2a2i:B (1.95) BS03 A5P 2.5.1.55 GO:0005737 ... O66496 19228070 MOAD: Kd=0.04uM
    10 2cxp:A (1.7) BS01 A5P 5.3.1.9 GO:0001701 ... P06745 16375918
    11 2cxp:B (1.7) BS01 A5P 5.3.1.9 GO:0001701 ... P06745 16375918
    12 2ef9:A (2.0) BS02 A5P 2.5.1.55 GO:0005737 ... O66496 17381075 MOAD: Kd=14.18uM
    13 2ef9:B (2.0) BS02 A5P 2.5.1.55 GO:0005737 ... O66496 17381075 MOAD: Kd=14.18uM
    14 2nws:A (1.8) BS02 A5P 2.5.1.55 GO:0005737 ... O66496 17381075 MOAD: Kd=5.44uM
    15 2nws:B (1.8) BS02 A5P 2.5.1.55 GO:0005737 ... O66496 17381075 MOAD: Kd=5.44uM
    16 2nx3:A (2.1) BS02 A5P 2.5.1.55 GO:0005737 ... O66496 17381075 MOAD: Kd=17uM
    17 2nx3:B (2.1) BS02 A5P 2.5.1.55 GO:0005737 ... O66496 17381075 MOAD: Kd=17uM
    18 2nx3:C (2.1) BS02 A5P 2.5.1.55 GO:0005737 ... O66496 17381075 MOAD: Kd=17uM
    19 2nx3:E (2.1) BS02 A5P 2.5.1.55 GO:0005737 ... O66496 17381075 MOAD: Kd=17uM
    20 2nx3:F (2.1) BS02 A5P 2.5.1.55 GO:0005737 ... O66496 17381075 MOAD: Kd=17uM
    21 2nx3:G (2.1) BS02 A5P 2.5.1.55 GO:0005737 ... O66496 17381075 MOAD: Kd=17uM
    22 2nx3:H (2.1) BS02 A5P 2.5.1.55 GO:0005737 ... O66496 17381075 MOAD: Kd=17uM
    23 2nx3:I (2.1) BS02 A5P 2.5.1.55 GO:0005737 ... O66496 17381075 MOAD: Kd=17uM
    24 2nx3:J (2.1) BS02 A5P 2.5.1.55 GO:0005737 ... O66496 17381075 MOAD: Kd=17uM
    25 2nx3:K (2.1) BS02 A5P 2.5.1.55 GO:0005737 ... O66496 17381075 MOAD: Kd=17uM
    26 2nx3:L (2.1) BS02 A5P 2.5.1.55 GO:0005737 ... O66496 17381075 MOAD: Kd=17uM
    27 2nxg:A (1.95) BS02 A5P 2.5.1.55 GO:0005737 ... O66496 17381075 MOAD: Kd=17uM
    28 3tmq:A (2.1) BS01 A5P 2.5.1.55 GO:0005737 ... Q3JP68 23382856
    29 3tmq:C (2.1) BS01 A5P 2.5.1.55 GO:0005737 ... Q3JP68 23382856
    30 3und:A (2.1) BS01 A5P 2.5.1.55 GO:0005737 ... Q3JP68 23382856
    31 3und:B (2.1) BS01 A5P 2.5.1.55 GO:0005737 ... Q3JP68 23382856
    32 3und:C (2.1) BS01 A5P 2.5.1.55 GO:0005737 ... Q3JP68 23382856
    33 3und:D (2.1) BS01 A5P 2.5.1.55 GO:0005737 ... Q3JP68 23382856
    34 3upb:A (1.5) BS01 A5P 2.2.1.2 GO:0004801 ... Q5NFX0 24510200
    35 3upb:B (1.5) BS01 A5P 2.2.1.2 GO:0004801 ... Q5NFX0 24510200
    36 5uqi:A (1.62) BS01 A5P ? GO:0016853 ... A0A0H2VCL5 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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