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BioLiP
Download all results in tab-seperated text for 44 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 9b55:B (3.23) BS01 A1AIV ? N/A P0CH07 39143218
    2 9b56:A (3.35) BS01 A1AIV 2.3.2.23 GO:0000151 ... P46595 39143218
    3 9b56:B (3.35) BS01 A1AIV ? N/A P0CH07 39143218
    4 9b57:B (3.37) BS01 A1AIV ? N/A P0CH07 39143218
    5 9b58:A (3.39) BS01 A1AIV 2.3.2.23 GO:0000151 ... P46595 39143218
    6 9b59:C (3.49) BS01 A1AIV 2.3.2.26 N/A Q9UTG2 39143218
    7 9b5a:C (3.65) BS01 A1AIV 2.3.2.26 N/A Q9UTG2 39143218
    8 9b5b:C (3.31) BS01 A1AIV 2.3.2.26 N/A Q9UTG2 39143218
    9 9b5c:A (2.5) BS02 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    10 9b5c:C (2.5) BS01 A1AIV 2.3.2.23 GO:0000151 ... P46595 39143218
    11 9b5d:A (2.8) BS02 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    12 9b5d:C (2.8) BS01 A1AIV 2.3.2.23 GO:0000151 ... P46595 39143218
    13 9b5e:A (2.81) BS02 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    14 9b5e:C (2.81) BS01 A1AIV 2.3.2.23 GO:0000151 ... P46595 39143218
    15 9b5f:A (2.78) BS02 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    16 9b5f:C (2.78) BS01 A1AIV 2.3.2.23 GO:0000151 ... P46595 39143218
    17 9b5g:A (2.67) BS02 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    18 9b5g:C (2.67) BS01 A1AIV 2.3.2.23 GO:0000151 ... P46595 39143218
    19 9b5h:A (2.69) BS03 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    20 9b5h:C (2.69) BS01 A1AIV 2.3.2.23 GO:0000151 ... P46595 39143218
    21 9b5i:A (2.7) BS03 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    22 9b5j:A (2.86) BS02 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    23 9b5k:C (3.16) BS01 A1AIV 2.3.2.23 GO:0000151 ... P46595 39143218
    24 9b5l:A (3.3) BS02 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    25 9b5l:C (3.3) BS01 A1AIV 2.3.2.23 GO:0000151 ... P46595 39143218
    26 9b5m:A (2.79) BS02 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    27 9b5m:C (2.79) BS01 A1AIV 2.3.2.23 GO:0000151 ... P46595 39143218
    28 9b5n:A (3.12) BS02 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    29 9b5n:C (3.12) BS01 A1AIV 2.3.2.23 GO:0000151 ... P46595 39143218
    30 9b5o:A (3.19) BS02 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    31 9b5o:C (3.19) BS01 A1AIV 2.3.2.23 GO:0000151 ... P46595 39143218
    32 9b5p:A (3.08) BS02 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    33 9b5p:C (3.08) BS02 A1AIV 2.3.2.23 GO:0000151 ... P46595 39143218
    34 9b5q:A (2.95) BS02 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    35 9b5q:C (2.95) BS01 A1AIV 2.3.2.23 GO:0000151 ... P46595 39143218
    36 9b5r:A (2.95) BS02 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    37 9b5r:C (2.95) BS01 A1AIV 2.3.2.23 GO:0000151 ... P46595 39143218
    38 9b5s:A (2.96) BS02 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    39 9b5t:A (3.16) BS02 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    40 9b5v:C (3.94) BS01 A1AIV 2.3.2.23 GO:0000151 ... P46595 39143218
    41 9b5w:A (3.96) BS02 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    42 9b5w:C (3.96) BS01 A1AIV 2.3.2.23 GO:0000151 ... P46595 39143218
    43 9b5x:A (4.16) BS03 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    44 9b5x:C (4.16) BS01 A1AIV 2.3.2.23 GO:0000151 ... P46595 39143218

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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