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BioLiP
Download all results in tab-seperated text for 132 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6adq:A (3.5) BS03 9YF ? GO:0005886 ... I7GD61 30361386
    2 6adq:A (3.5) BS04 9YF ? GO:0005886 ... I7GD61 30361386
    3 6adq:B (3.5) BS02 9YF 7.1.1.8 GO:0008121 ... A0R052 30361386
    4 6adq:B (3.5) BS12 9YF 7.1.1.8 GO:0008121 ... A0R052 30361386
    5 6adq:B (3.5) BS13 9YF 7.1.1.8 GO:0008121 ... A0R052 30361386
    6 6adq:B (3.5) BS15 9YF 7.1.1.8 GO:0008121 ... A0R052 30361386
    7 6adq:C (3.5) BS04 9YF 7.1.1.8 GO:0005506 ... I7FPH1 30361386
    8 6adq:D (3.5) BS02 9YF ? GO:0016020 ... A0QVH4 30361386
    9 6adq:H (3.5) BS02 9YF 7.1.1.9 GO:0004129 ... A0R056 30361386
    10 6adq:K (3.5) BS01 9YF ? N/A A0R562 30361386
    11 6adq:M (3.5) BS02 9YF ? GO:0005886 ... I7GD61 30361386
    12 6adq:M (3.5) BS04 9YF ? GO:0005886 ... I7GD61 30361386
    13 6adq:N (3.5) BS04 9YF 7.1.1.8 GO:0008121 ... A0R052 30361386
    14 6adq:N (3.5) BS06 9YF 7.1.1.8 GO:0008121 ... A0R052 30361386
    15 6adq:N (3.5) BS14 9YF 7.1.1.8 GO:0008121 ... A0R052 30361386
    16 6adq:N (3.5) BS15 9YF 7.1.1.8 GO:0008121 ... A0R052 30361386
    17 6adq:O (3.5) BS04 9YF 7.1.1.8 GO:0005506 ... I7FPH1 30361386
    18 6adq:P (3.5) BS02 9YF ? GO:0016020 ... A0QVH4 30361386
    19 6adq:T (3.5) BS02 9YF 7.1.1.9 GO:0004129 ... A0R056 30361386
    20 6adq:W (3.5) BS02 9YF ? N/A A0R562 30361386
    21 7e1v:A (2.68) BS03 9YF ? GO:0005886 ... P9WH23 34819223
    22 7e1v:A (2.68) BS04 9YF ? GO:0005886 ... P9WH23 34819223
    23 7e1v:M (2.68) BS02 9YF ? GO:0005886 ... P9WH23 34819223
    24 7e1v:M (2.68) BS03 9YF ? GO:0005886 ... P9WH23 34819223
    25 7e1v:N (2.68) BS08 9YF 7.1.1.8 GO:0005886 ... P9WP37 34819223
    26 7e1w:A (2.67) BS03 9YF ? GO:0005886 ... P9WH23 34819223
    27 7e1w:A (2.67) BS04 9YF ? GO:0005886 ... P9WH23 34819223
    28 7e1w:B (2.67) BS07 9YF 7.1.1.8 GO:0005886 ... P9WP37 34819223
    29 7e1w:M (2.67) BS02 9YF ? GO:0005886 ... P9WH23 34819223
    30 7e1w:M (2.67) BS03 9YF ? GO:0005886 ... P9WH23 34819223
    31 7e1w:N (2.67) BS06 9YF 7.1.1.8 GO:0005886 ... P9WP37 34819223
    32 7e1x:A (2.93) BS03 9YF ? GO:0005886 ... P9WH23 34819223
    33 7e1x:A (2.93) BS04 9YF ? GO:0005886 ... P9WH23 34819223
    34 7e1x:B (2.93) BS07 9YF 7.1.1.8 GO:0005886 ... P9WP37 34819223
    35 7e1x:M (2.93) BS02 9YF ? GO:0005886 ... P9WH23 34819223
    36 7e1x:M (2.93) BS03 9YF ? GO:0005886 ... P9WH23 34819223
    37 7e1x:N (2.93) BS06 9YF 7.1.1.8 GO:0005886 ... P9WP37 34819223
    38 7q21:A (2.9) BS04 9YF ? GO:0005886 ... Q79VE8 34910901
    39 7q21:B (2.9) BS01 9YF 7.1.1.8 GO:0005886 ... Q79VE9 34910901
    40 7q21:B (2.9) BS08 9YF 7.1.1.8 GO:0005886 ... Q79VE9 34910901
    41 7q21:H (2.9) BS02 9YF ? GO:0005886 ... Q8NP09 34910901
    42 7q21:L (2.9) BS02 9YF ? N/A Q8NMB4 34910901
    43 7q21:a (2.9) BS02 9YF ? GO:0005886 ... Q79VE8 34910901
    44 7q21:a (2.9) BS05 9YF ? GO:0005886 ... Q79VE8 34910901
    45 7q21:b (2.9) BS03 9YF 7.1.1.8 GO:0005886 ... Q79VE9 34910901
    46 7q21:h (2.9) BS03 9YF ? GO:0005886 ... Q8NP09 34910901
    47 7q21:l (2.9) BS02 9YF ? N/A Q8NMB4 34910901
    48 7qhm:A (2.8) BS04 9YF ? GO:0005886 ... Q79VE8 35087070
    49 7qhm:B (2.8) BS06 9YF 7.1.1.8 GO:0005886 ... Q79VE9 35087070
    50 7qhm:B (2.8) BS08 9YF 7.1.1.8 GO:0005886 ... Q79VE9 35087070
    51 7qhm:H (2.8) BS03 9YF ? N/A Q8NMB4 35087070
    52 7qhm:I (2.8) BS02 9YF ? GO:0005886 ... Q8NP09 35087070
    53 7qhm:N (2.8) BS06 9YF ? GO:0005886 ... Q79VE8 35087070
    54 7qhm:O (2.8) BS08 9YF 7.1.1.8 GO:0005886 ... Q79VE9 35087070
    55 7qhm:U (2.8) BS03 9YF ? N/A Q8NMB4 35087070
    56 7qhm:V (2.8) BS02 9YF ? GO:0005886 ... Q8NP09 35087070
    57 7qho:A (3.1) BS04 9YF ? GO:0005886 ... Q79VE8 35087070
    58 7qho:A (3.1) BS06 9YF ? GO:0005886 ... Q79VE8 35087070
    59 7qho:B (3.1) BS06 9YF 7.1.1.8 GO:0005886 ... Q79VE9 35087070
    60 7qho:B (3.1) BS08 9YF 7.1.1.8 GO:0005886 ... Q79VE9 35087070
    61 7qho:H (3.1) BS02 9YF ? N/A Q8NMB4 35087070
    62 7qho:I (3.1) BS02 9YF ? GO:0005886 ... Q8NP09 35087070
    63 7qho:N (3.1) BS02 9YF ? GO:0005886 ... Q79VE8 35087070
    64 7qho:N (3.1) BS06 9YF ? GO:0005886 ... Q79VE8 35087070
    65 7qho:O (3.1) BS01 9YF 7.1.1.8 GO:0005886 ... Q79VE9 35087070
    66 7qho:O (3.1) BS08 9YF 7.1.1.8 GO:0005886 ... Q79VE9 35087070
    67 7qho:U (3.1) BS03 9YF ? N/A Q8NMB4 35087070
    68 7qho:V (3.1) BS03 9YF ? GO:0005886 ... Q8NP09 35087070
    69 7rh5:E (3.0) BS08 9YF 7.1.1.8 GO:0008121 ... A0R052 34590581
    70 7rh5:E (3.0) BS10 9YF 7.1.1.8 GO:0008121 ... A0R052 34590581
    71 7rh5:F (3.0) BS09 9YF 7.1.1.8 GO:0008121 ... A0R052 34590581
    72 7rh5:F (3.0) BS10 9YF 7.1.1.8 GO:0008121 ... A0R052 34590581
    73 7rh5:I (3.0) BS05 9YF 7.1.1.8 GO:0009055 ... I7FPH1 34590581
    74 7rh5:J (3.0) BS03 9YF ? GO:0016020 ... A0QVH4 34590581
    75 7rh5:M (3.0) BS02 9YF ? GO:0005886 ... I7GD61 34590581
    76 7rh5:M (3.0) BS03 9YF ? GO:0005886 ... I7GD61 34590581
    77 7rh5:M (3.0) BS04 9YF ? GO:0005886 ... I7GD61 34590581
    78 7rh5:O (3.0) BS05 9YF 7.1.1.8 GO:0009055 ... I7FPH1 34590581
    79 7rh5:P (3.0) BS03 9YF ? GO:0016020 ... A0QVH4 34590581
    80 7rh5:T (3.0) BS03 9YF 7.1.1.9 GO:0004129 ... A0R056 34590581
    81 7rh5:W (3.0) BS01 9YF ? N/A A0R562 34590581
    82 7rh5:Y (3.0) BS03 9YF ? GO:0005886 ... I7GD61 34590581
    83 7rh5:Y (3.0) BS04 9YF ? GO:0005886 ... I7GD61 34590581
    84 7rh5:Y (3.0) BS05 9YF ? GO:0005886 ... I7GD61 34590581
    85 7rh5:Z (3.0) BS03 9YF 7.1.1.9 GO:0004129 ... A0R056 34590581
    86 7rh5:c (3.0) BS01 9YF ? N/A A0R562 34590581
    87 7rh6:E (3.5) BS05 9YF 7.1.1.8 GO:0008121 ... A0R052 34590581
    88 7rh6:E (3.5) BS10 9YF 7.1.1.8 GO:0008121 ... A0R052 34590581
    89 7rh6:I (3.5) BS05 9YF 7.1.1.8 GO:0009055 ... I7FPH1 34590581
    90 7rh6:J (3.5) BS01 9YF ? GO:0016020 ... A0QVH4 34590581
    91 7rh6:M (3.5) BS03 9YF ? GO:0005886 ... I7GD61 34590581
    92 7rh6:O (3.5) BS03 9YF 7.1.1.8 GO:0009055 ... I7FPH1 34590581
    93 7rh6:T (3.5) BS01 9YF 7.1.1.9 GO:0004129 ... A0R056 34590581
    94 7rh6:Y (3.5) BS03 9YF ? GO:0005886 ... I7GD61 34590581
    95 7rh6:Y (3.5) BS04 9YF ? GO:0005886 ... I7GD61 34590581
    96 7rh6:Z (3.5) BS03 9YF 7.1.1.9 GO:0004129 ... A0R056 34590581
    97 7rh6:c (3.5) BS01 9YF ? N/A A0R562 34590581
    98 7rh7:E (3.0) BS08 9YF 7.1.1.8 GO:0008121 ... A0R052 34590581
    99 7rh7:E (3.0) BS09 9YF 7.1.1.8 GO:0008121 ... A0R052 34590581
    100 7rh7:F (3.0) BS08 9YF 7.1.1.8 GO:0008121 ... A0R052 34590581
    101 7rh7:F (3.0) BS09 9YF 7.1.1.8 GO:0008121 ... A0R052 34590581
    102 7rh7:I (3.0) BS04 9YF 7.1.1.8 GO:0009055 ... I7FPH1 34590581
    103 7rh7:J (3.0) BS02 9YF ? GO:0016020 ... A0QVH4 34590581
    104 7rh7:M (3.0) BS02 9YF ? GO:0005886 ... I7GD61 34590581
    105 7rh7:M (3.0) BS04 9YF ? GO:0005886 ... I7GD61 34590581
    106 7rh7:M (3.0) BS05 9YF ? GO:0005886 ... I7GD61 34590581
    107 7rh7:O (3.0) BS04 9YF 7.1.1.8 GO:0009055 ... I7FPH1 34590581
    108 7rh7:P (3.0) BS03 9YF ? GO:0016020 ... A0QVH4 34590581
    109 7rh7:T (3.0) BS03 9YF 7.1.1.9 GO:0004129 ... A0R056 34590581
    110 7rh7:Y (3.0) BS03 9YF ? GO:0005886 ... I7GD61 34590581
    111 7rh7:Y (3.0) BS04 9YF ? GO:0005886 ... I7GD61 34590581
    112 7rh7:Z (3.0) BS03 9YF 7.1.1.9 GO:0004129 ... A0R056 34590581
    113 8ovc:G (2.8) BS02 9YF N/A GO:0005886 ... A0R051 38902248
    114 8ovc:G (2.8) BS03 9YF N/A GO:0005886 ... A0R051 38902248
    115 8ovc:H (2.8) BS03 9YF N/A GO:0008121 ... A0R052 38902248
    116 8ovc:H (2.8) BS11 9YF N/A GO:0008121 ... A0R052 38902248
    117 8ovc:M (2.8) BS03 9YF N/A GO:0005886 ... A0R051 38902248
    118 8ovc:N (2.8) BS07 9YF N/A GO:0008121 ... A0R052 38902248
    119 8ovc:W (2.8) BS02 9YF N/A N/A A0R562 38902248
    120 8ovc:b (2.8) BS02 9YF N/A N/A A0R562 38902248
    121 8ovd:G (2.3) BS02 9YF N/A GO:0005886 ... A0R051 38902248
    122 8ovd:G (2.3) BS06 9YF N/A GO:0005886 ... A0R051 38902248
    123 8ovd:H (2.3) BS02 9YF N/A GO:0008121 ... A0R052 38902248
    124 8ovd:H (2.3) BS13 9YF N/A GO:0008121 ... A0R052 38902248
    125 8ovd:I (2.3) BS02 9YF N/A GO:0016020 ... A0QVH4 38902248
    126 8ovd:M (2.3) BS04 9YF N/A GO:0005886 ... A0R051 38902248
    127 8ovd:M (2.3) BS07 9YF N/A GO:0005886 ... A0R051 38902248
    128 8ovd:N (2.3) BS10 9YF N/A GO:0008121 ... A0R052 38902248
    129 8ovd:N (2.3) BS13 9YF N/A GO:0008121 ... A0R052 38902248
    130 8ovd:P (2.3) BS02 9YF N/A GO:0016020 ... A0QVH4 38902248
    131 8ovd:W (2.3) BS03 9YF N/A N/A A0R562 38902248
    132 8ovd:b (2.3) BS04 9YF N/A N/A A0R562 38902248
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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