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BioLiP
Download all results in tab-seperated text for 7 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5n3t:A (1.209) BS01 8K2 2.7.11.11 GO:0000287 ... P25321 N/A
    2 5n3t:A (1.209) BS02 8K2 2.7.11.11 GO:0000287 ... P25321 N/A
    3 5sth:B (1.67) BS01 8K2 ? N/A P32357 36260741
    4 5sth:B (1.67) BS02 8K2 ? N/A P32357 36260741
    5 6sb7:A (1.09) BS02 8K2 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 32235320
    6 6yqv:H (1.45) BS03 8K2 3.4.21.5 GO:0004252 ... P00734 N/A
    7 7gt8:A (1.91) BS01 8K2 3.1.3.48 GO:0004725 ... P18031 38260327
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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