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BioLiP
Download all results in tab-seperated text for 43 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5mf2:A (2.0) BS01 7MT ? GO:0098015 ... Q6QGE8 29619195
    2 5mf2:C (2.0) BS01 7MT ? GO:0098015 ... Q6QGE8 29619195
    3 5mf2:D (2.0) BS01 7MT ? GO:0098015 ... Q6QGE8 29619195
    4 6f2f:A (1.65) BS01 7MT 3.4.22.-
    3.5.1.124    		 GO:0005737 ... O59413 29806881
    5 6f2f:B (1.65) BS01 7MT 3.4.22.-
    3.5.1.124    		 GO:0005737 ... O59413 29806881
    6 6f2f:C (1.65) BS01 7MT 3.4.22.-
    3.5.1.124    		 GO:0005737 ... O59413 29806881
    7 6f2h:A (2.19) BS01 7MT 3.4.22.-
    3.5.1.124    		 GO:0005737 ... O59413 29806881
    8 6f2h:B (2.19) BS01 7MT 3.4.22.-
    3.5.1.124    		 GO:0005737 ... O59413 29806881
    9 6f2h:E (2.19) BS01 7MT 3.4.22.-
    3.5.1.124    		 GO:0005737 ... O59413 29806881
    10 6f2h:F (2.19) BS01 7MT 3.4.22.-
    3.5.1.124    		 GO:0005737 ... O59413 29806881
    11 6f2h:G (2.19) BS01 7MT 3.4.22.-
    3.5.1.124    		 GO:0005737 ... O59413 29806881
    12 6f2h:I (2.19) BS01 7MT 3.4.22.-
    3.5.1.124    		 GO:0005737 ... O59413 29806881
    13 6f2h:J (2.19) BS01 7MT 3.4.22.-
    3.5.1.124    		 GO:0005737 ... O59413 29806881
    14 6f2h:K (2.19) BS01 7MT 3.4.22.-
    3.5.1.124    		 GO:0005737 ... O59413 29806881
    15 6f2h:L (2.19) BS01 7MT 3.4.22.-
    3.5.1.124    		 GO:0005737 ... O59413 29806881
    16 6f2i:A (1.2) BS01 7MT 3.2.1.17 GO:0003796 ... P00698 29806881
    17 6f2j:A (1.3) BS01 7MT 3.2.1.17 GO:0003796 ... P00698 29806881
    18 6f2m:A (1.8) BS01 7MT ? GO:0098015 ... Q6QGE8 29806881
    19 6f2m:C (1.8) BS01 7MT ? GO:0098015 ... Q6QGE8 29806881
    20 6f2m:D (1.8) BS01 7MT ? GO:0098015 ... Q6QGE8 29806881
    21 6frm:C (2.2) BS05 7MT ? GO:0000166 ... A0A452CSW8 29806881
    22 6frn:C (1.74) BS03 7MT ? GO:0000166 ... A0A452CSW8 29806881
    23 6frn:D (1.74) BS03 7MT ? GO:0000166 ... A0A452CSW8 29806881
    24 6fro:A (1.42) BS01 7MT 3.2.1.17 GO:0003796 ... P00698 29806881
    25 6hf6:A (2.0) BS01 7MT 3.4.22.-
    3.5.1.124    		 GO:0005737 ... O59413 31396026
    26 6hf6:B (2.0) BS01 7MT 3.4.22.-
    3.5.1.124    		 GO:0005737 ... O59413 31396026
    27 6hf6:C (2.0) BS01 7MT 3.4.22.-
    3.5.1.124    		 GO:0005737 ... O59413 31396026
    28 6hf7:A (1.96) BS01 7MT 2.7.4.3 GO:0004017 ... P43410 31396026
    29 6hf7:B (1.96) BS01 7MT 2.7.4.3 GO:0004017 ... P43410 31396026
    30 6qss:A (1.892) BS01 7MT ? GO:0004459 ... A0A0U3FQH7 31301348
    31 6qss:D (1.892) BS01 7MT ? GO:0004459 ... A0A0U3FQH7 31301348
    32 6rqa:B (2.56) BS02 7MT 1.4.1.- GO:0000166 ... A1B8Z0 31723261
    33 6tvy:A (1.51) BS01 7MT 3.2.1.17 GO:0003796 ... P00698 N/A
    34 6yxg:H (3.01) BS01 7MT N/A N/A N/A 34723237
    35 7vcn:A (2.343) BS01 7MT N/A N/A N/A 35561142
    36 7vcn:B (2.343) BS01 7MT N/A N/A N/A 35561142
    37 7vcn:C (2.343) BS01 7MT N/A N/A N/A 35561142
    38 7vcn:D (2.343) BS01 7MT N/A N/A N/A 35561142
    39 8bpq:A (2.3) BS02 7MT 1.3.1.- GO:0005829 ... P77258 N/A
    40 8bpq:B (2.3) BS02 7MT 1.3.1.- GO:0005829 ... P77258 N/A
    41 8bpq:C (2.3) BS02 7MT 1.3.1.- GO:0005829 ... P77258 N/A
    42 8owc:A (1.7) BS01 7MT N/A N/A P00698 38738452
    43 8q8o:B (2.7) BS01 7MT ? N/A A0A0H2ZF40 38505547
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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