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BioLiP
Download all results in tab-seperated text for 13 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4bjx:A (1.59) BS01 73B ? N/A O60885 24009722 MOAD: ic50=22nM
    PDBbind: -logKd/Ki=7.66, IC50=22nM
    BindingDB: IC50=0.398107nM, Kd=4.4nM
    2 4uyf:A (1.6) BS01 73B ? N/A P25440 25249180 MOAD: Kd=4.4nM
    PDBbind: -logKd/Ki=7.60, Kd=25nM
    BindingDB: IC50=158nM, Kd=25nM
    3 4uyf:A (1.6) BS02 73B ? N/A P25440 25249180 MOAD: Kd=4.4nM
    PDBbind: -logKd/Ki=7.60, Kd=25nM
    BindingDB: IC50=158nM, Kd=25nM
    4 4uyf:B (1.6) BS01 73B ? N/A P25440 25249180 MOAD: Kd=4.4nM
    BindingDB: IC50=158nM, Kd=25nM
    5 4uyf:C (1.6) BS01 73B ? N/A P25440 25249180 MOAD: Kd=4.4nM
    BindingDB: IC50=158nM, Kd=25nM
    6 4uyg:A (2.5) BS01 73B ? N/A P25440 25249180 MOAD: Kd=4.4nM
    PDBbind: -logKd/Ki=7.60, Kd=25nM
    BindingDB: IC50=158nM, Kd=25nM
    7 4uyg:B (2.5) BS01 73B ? N/A P25440 25249180 MOAD: Kd=4.4nM
    BindingDB: IC50=158nM, Kd=25nM
    8 4uyg:C (2.5) BS01 73B ? N/A P25440 25249180 MOAD: Kd=4.4nM
    BindingDB: IC50=158nM, Kd=25nM
    9 4uyg:D (2.5) BS01 73B ? N/A P25440 25249180 MOAD: Kd=4.4nM
    BindingDB: IC50=158nM, Kd=25nM
    10 4uyg:E (2.5) BS01 73B ? N/A P25440 25249180 MOAD: Kd=4.4nM
    BindingDB: IC50=158nM, Kd=25nM
    11 4uyg:F (2.5) BS01 73B ? N/A P25440 25249180 MOAD: Kd=4.4nM
    BindingDB: IC50=158nM, Kd=25nM
    12 7amc:A (1.22) BS01 73B ? N/A A0A5K4ESD7 N/A
    13 7amc:B (1.22) BS01 73B ? N/A A0A5K4ESD7 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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