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BioLiP
Download all results in tab-seperated text for 13 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1mrs:A (2.0) BS02 5HU 2.7.4.9 GO:0000287 ... P9WKE1 12454011 MOAD: Ki=110uM
    PDBbind: -logKd/Ki=3.96, Ki=110uM
    2 7jxf:A (1.5) BS01 5HU 2.1.1.45 GO:0000287 ... P0A884 33829766
    3 7jxf:B (1.5) BS01 5HU 2.1.1.45 GO:0000287 ... P0A884 33829766
    4 8qhq:A (1.78) BS01 5HU 3.2.2.- GO:0009159 ... O43598 37884503
    5 8qhq:A (1.78) BS02 5HU 3.2.2.- GO:0009159 ... O43598 37884503
    6 8qhq:B (1.78) BS01 5HU 3.2.2.- GO:0009159 ... O43598 37884503
    7 8qhq:B (1.78) BS02 5HU 3.2.2.- GO:0009159 ... O43598 37884503
    8 8qhq:C (1.78) BS01 5HU 3.2.2.- GO:0009159 ... O43598 37884503
    9 8qhq:C (1.78) BS02 5HU 3.2.2.- GO:0009159 ... O43598 37884503
    10 8qhq:D (1.78) BS01 5HU 3.2.2.- GO:0009159 ... O43598 37884503
    11 8qhq:D (1.78) BS02 5HU 3.2.2.- GO:0009159 ... O43598 37884503
    12 8qhq:E (1.78) BS01 5HU 3.2.2.- GO:0009159 ... O43598 37884503
    13 8qhq:F (1.78) BS01 5HU 3.2.2.- GO:0009159 ... O43598 37884503
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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