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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 383 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    201 4peg:D (2.0) BS02 5GP 3.1.4.- GO:0000375 ... C4M1P9 25123664
    202 4peg:E (2.0) BS02 5GP 3.1.4.- GO:0000375 ... C4M1P9 25123664
    203 4q9f:A (1.75) BS01 5GP 3.2.2.22 GO:0000166 ... D9J2T9 N/A
    204 4rht:A (2.7633) BS02 5GP 2.4.2.8 GO:0000166 ... P9WHQ9 25915781
    205 4rht:B (2.7633) BS02 5GP 2.4.2.8 GO:0000166 ... P9WHQ9 25915781
    206 4rht:C (2.7633) BS02 5GP 2.4.2.8 GO:0000166 ... P9WHQ9 25915781
    207 4rht:D (2.7633) BS02 5GP 2.4.2.8 GO:0000166 ... P9WHQ9 25915781
    208 4xba:B (1.5) BS01 5GP 3.6.1.71
    3.6.1.72    		 GO:0003824 ... O74859 26007660
    209 4z0g:A (1.25) BS01 5GP 1.1.1.205 GO:0003824 ... Q756Z6 26558346 MOAD: Ki=600uM
    210 4z0g:B (1.25) BS01 5GP 1.1.1.205 GO:0003824 ... Q756Z6 26558346 MOAD: Ki=600uM
    211 4z0g:B (1.25) BS02 5GP 1.1.1.205 GO:0003824 ... Q756Z6 26558346 MOAD: Ki=600uM
    212 4z87:A (2.25) BS01 5GP 1.1.1.205 GO:0000166 ... Q756Z6 26558346
    213 4z87:B (2.25) BS01 5GP 1.1.1.205 GO:0000166 ... Q756Z6 26558346
    214 4z87:C (2.25) BS01 5GP 1.1.1.205 GO:0000166 ... Q756Z6 26558346
    215 4z87:D (2.25) BS01 5GP 1.1.1.205 GO:0000166 ... Q756Z6 26558346
    216 4zfn:A (1.901) BS01 5GP 2.4.2.- GO:0016757 ... Q97W22 N/A
    217 4zfn:B (1.901) BS01 5GP 2.4.2.- GO:0016757 ... Q97W22 N/A
    218 5esx:A (2.71) BS01 5GP N/A N/A N/A 26968365
    219 5esx:B (2.71) BS01 5GP N/A N/A N/A 26968365
    220 5jv5:A (2.73) BS01 5GP 2.4.2.8 GO:0000166 ... Q07010 27786284
    221 5jv5:B (2.73) BS01 5GP 2.4.2.8 GO:0000166 ... Q07010 27786284
    222 5k1d:A (1.94) BS01 5GP 3.5.2.6 GO:0000166 ... Q99QC1 28242658 MOAD: Ki=20.8uM
    PDBbind: -logKd/Ki=4.68, Ki=20.8uM
    223 5km1:A (1.65) BS01 5GP 3.4.22.-
    3.9.1.-    		 GO:0000118 ... P49773 28968488 PDBbind: -logKd/Ki=6.18, Kd=0.663uM
    224 5o7f:A (1.9) BS01 5GP ? GO:0000166 ... Q9X1T1 29107484
    225 5o7f:B (1.9) BS01 5GP ? GO:0000166 ... Q9X1T1 29107484
    226 5tc3:A (2.462) BS01 5GP 1.1.1.205 GO:0000166 ... Q756Z6 28572600
    227 5tc3:B (2.462) BS01 5GP 1.1.1.205 GO:0000166 ... Q756Z6 28572600
    228 5x71:A (2.568) BS01 5GP 2.7.7.50 GO:0003723 ... P14583 N/A
    229 5x71:B (2.568) BS01 5GP 2.7.7.50 GO:0003723 ... P14583 N/A
    230 5xtk:A (1.74) BS01 5GP 2.4.2.-
    2.4.2.22    		 GO:0000287 ... Q8ZC05 N/A
    231 5y62:B (3.0) BS01 5GP ? N/A Q9I4L4 28870806 PDBbind: -logKd/Ki=1.74, Kd=18.4mM
    232 6hgs:A (1.55) BS01 5GP 2.4.2.7 GO:0002055 ... P07741 31160323 MOAD: Ki=170uM
    233 6hgs:B (1.55) BS01 5GP 2.4.2.7 GO:0002055 ... P07741 31160323 MOAD: Ki=170uM
    234 6i0m:A (2.567) BS01 5GP 1.1.1.205 GO:0000166 ... P12268 30664871
    235 6i0m:B (2.567) BS01 5GP 1.1.1.205 GO:0000166 ... P12268 30664871
    236 6j23:A (1.9) BS01 5GP 3.5.4.- GO:0005737 ... Q8LPL7 31318636
    237 6jig:A (1.903) BS01 5GP 1.1.1.205 GO:0003824 ... Q57ZS7 32296055
    238 6jig:A (1.903) BS02 5GP 1.1.1.205 GO:0003824 ... Q57ZS7 32296055
    239 6low:A (1.39) BS01 5GP 3.2.2.22 GO:0017148 ... P16094 32653369
    240 6mfu:A (1.6) BS01 5GP 2.7.4.8 GO:0004385 ... J9VQ84 N/A
    241 6mfu:B (1.6) BS01 5GP 2.7.4.8 GO:0004385 ... J9VQ84 N/A
    242 6mfu:C (1.6) BS01 5GP 2.7.4.8 GO:0004385 ... J9VQ84 N/A
    243 6mfu:D (1.6) BS01 5GP 2.7.4.8 GO:0004385 ... J9VQ84 N/A
    244 6mxc:A (1.993) BS01 5GP ? GO:0000166 ... Q38CA1 31287615 MOAD: Ki=2.73uM
    245 6mxc:B (1.993) BS01 5GP ? GO:0000166 ... Q38CA1 31287615 MOAD: Ki=2.73uM
    246 6mxc:C (1.993) BS01 5GP ? GO:0000166 ... Q38CA1 31287615 MOAD: Ki=2.73uM
    247 6mxc:D (1.993) BS01 5GP ? GO:0000166 ... Q38CA1 31287615 MOAD: Ki=2.73uM
    248 6mxc:E (1.993) BS01 5GP ? GO:0000166 ... Q38CA1 31287615 MOAD: Ki=2.73uM
    249 6mxc:F (1.993) BS01 5GP ? GO:0000166 ... Q38CA1 31287615 MOAD: Ki=2.73uM
    250 6o3v:A (3.5) BS01 5GP 2.1.1.56
    2.7.7.50
    3.1.4.-    		 GO:0003723 ... Q1WK45 32494598
    251 6o3v:B (3.5) BS01 5GP 2.1.1.56
    2.7.7.50
    3.1.4.-    		 GO:0003723 ... Q1WK45 32494598
    252 6o3v:C (3.5) BS01 5GP 2.1.1.56
    2.7.7.50
    3.1.4.-    		 GO:0003723 ... Q1WK45 32494598
    253 6o6b:A (2.7) BS01 5GP 2.1.1.56
    2.7.7.50
    3.1.4.-    		 GO:0003723 ... Q1WK45 N/A
    254 6o6b:B (2.7) BS01 5GP 2.1.1.56
    2.7.7.50
    3.1.4.-    		 GO:0003723 ... Q1WK45 N/A
    255 6o6b:C (2.7) BS01 5GP 2.1.1.56
    2.7.7.50
    3.1.4.-    		 GO:0003723 ... Q1WK45 N/A
    256 6o6b:D (2.7) BS01 5GP 2.1.1.56
    2.7.7.50
    3.1.4.-    		 GO:0003723 ... Q1WK45 N/A
    257 6qsk:D (3.394) BS01 5GP ? GO:0000139 ... P40107 31604945
    258 6qsk:E (3.394) BS01 5GP ? GO:0000139 ... P40107 31604945
    259 6rfu:A (2.8) BS02 5GP 1.1.1.205 GO:0000166 ... P50098 32001697
    260 6rfu:B (2.8) BS03 5GP 1.1.1.205 GO:0000166 ... P50098 32001697
    261 6wct:A (2.1) BS01 5GP 2.7.4.8 GO:0004385 ... B2FT06 N/A
    262 6wct:B (2.1) BS01 5GP 2.7.4.8 GO:0004385 ... B2FT06 N/A
    263 6wct:C (2.1) BS01 5GP 2.7.4.8 GO:0004385 ... B2FT06 N/A
    264 6wct:D (2.1) BS01 5GP 2.7.4.8 GO:0004385 ... B2FT06 N/A
    265 6yk9:B (1.7) BS01 5GP N/A GO:0019386 ... N/A 32061937
    266 6yk9:C (1.7) BS01 5GP N/A GO:0019386 ... N/A 32061937
    267 6ykb:A (1.55) BS01 5GP N/A GO:0019386 ... N/A 32061937
    268 6ykb:C (1.55) BS01 5GP N/A GO:0019386 ... N/A 32061937
    269 7bf4:A (1.55) BS01 5GP 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 N/A P0DTD1 33850605
    270 7buj:A (2.13) BS03 5GP 2.7.7.86 N/A Q8C6L5 32814054
    271 7buj:B (2.13) BS03 5GP 2.7.7.86 N/A Q8C6L5 32814054
    272 7bum:A (3.047) BS03 5GP 2.7.7.86 GO:0002218 ... Q8C6L5 32814054
    273 7bum:B (3.047) BS03 5GP 2.7.7.86 GO:0002218 ... Q8C6L5 32814054
    274 7c4c:A (2.265) BS10 5GP ? GO:0000166 ... Q38DE2 33332555
    275 7c4c:A (2.265) BS11 5GP ? GO:0000166 ... Q38DE2 33332555
    276 7c4c:A (2.265) BS12 5GP ? GO:0000166 ... Q38DE2 33332555
    277 7c4c:A (2.265) BS13 5GP ? GO:0000166 ... Q38DE2 33332555
    278 7f4y:A (2.2) BS06 5GP 2.7.7.7
    3.1.11.-    		 GO:0000166 ... Q38087 34869578
    279 7f4y:B (2.2) BS04 5GP 2.7.7.7
    3.1.11.-    		 GO:0000166 ... Q38087 34869578
    280 7lc7:A (1.58) BS02 5GP 1.17.99.6 GO:0006400 ... Q9WZJ0 N/A
    281 7mpp:A (2.0) BS01 5GP ? GO:0003676 ... X5MEI1 34533457
    282 7mpp:A (2.0) BS03 5GP ? GO:0003676 ... X5MEI1 34533457
    283 7mpp:A (2.0) BS04 5GP ? GO:0003676 ... X5MEI1 34533457
    284 7mpp:C (2.0) BS01 5GP ? GO:0003676 ... X5MEI1 34533457
    285 7mpp:C (2.0) BS03 5GP ? GO:0003676 ... X5MEI1 34533457
    286 7mpp:C (2.0) BS04 5GP ? GO:0003676 ... X5MEI1 34533457
    287 7mpp:E (2.0) BS01 5GP ? GO:0003676 ... X5MEI1 34533457
    288 7mpp:E (2.0) BS02 5GP ? GO:0003676 ... X5MEI1 34533457
    289 7mpp:E (2.0) BS04 5GP ? GO:0003676 ... X5MEI1 34533457
    290 7mpp:G (2.0) BS01 5GP ? GO:0003676 ... X5MEI1 34533457
    291 7mpp:G (2.0) BS02 5GP ? GO:0003676 ... X5MEI1 34533457
    292 7mpp:G (2.0) BS04 5GP ? GO:0003676 ... X5MEI1 34533457
    293 7mpp:I (2.0) BS01 5GP ? GO:0003676 ... X5MEI1 34533457
    294 7mpp:I (2.0) BS02 5GP ? GO:0003676 ... X5MEI1 34533457
    295 7mpp:I (2.0) BS04 5GP ? GO:0003676 ... X5MEI1 34533457
    296 7mpp:K (2.0) BS01 5GP ? GO:0003676 ... X5MEI1 34533457
    297 7mpp:K (2.0) BS02 5GP ? GO:0003676 ... X5MEI1 34533457
    298 7mpp:K (2.0) BS03 5GP ? GO:0003676 ... X5MEI1 34533457
    299 7mpp:M (2.0) BS01 5GP ? GO:0003676 ... X5MEI1 34533457
    300 7mpp:M (2.0) BS02 5GP ? GO:0003676 ... X5MEI1 34533457
    301 7mpp:M (2.0) BS04 5GP ? GO:0003676 ... X5MEI1 34533457
    302 7mpp:O (2.0) BS01 5GP ? GO:0003676 ... X5MEI1 34533457
    303 7mpp:O (2.0) BS02 5GP ? GO:0003676 ... X5MEI1 34533457
    304 7mpp:O (2.0) BS03 5GP ? GO:0003676 ... X5MEI1 34533457
    305 7mpq:A (2.35) BS01 5GP ? GO:0003676 ... X5MEI1 34533457
    306 7mpq:A (2.35) BS02 5GP ? GO:0003676 ... X5MEI1 34533457
    307 7mpq:A (2.35) BS05 5GP ? GO:0003676 ... X5MEI1 34533457
    308 7mpq:C (2.35) BS01 5GP ? GO:0003676 ... X5MEI1 34533457
    309 7mpq:C (2.35) BS04 5GP ? GO:0003676 ... X5MEI1 34533457
    310 7mpq:C (2.35) BS05 5GP ? GO:0003676 ... X5MEI1 34533457
    311 7mpq:E (2.35) BS01 5GP ? GO:0003676 ... X5MEI1 34533457
    312 7mpq:E (2.35) BS02 5GP ? GO:0003676 ... X5MEI1 34533457
    313 7mpq:E (2.35) BS03 5GP ? GO:0003676 ... X5MEI1 34533457
    314 7mpq:G (2.35) BS04 5GP ? GO:0003676 ... X5MEI1 34533457
    315 7mpq:I (2.35) BS01 5GP ? GO:0003676 ... X5MEI1 34533457
    316 7mpq:I (2.35) BS02 5GP ? GO:0003676 ... X5MEI1 34533457
    317 7mpq:I (2.35) BS03 5GP ? GO:0003676 ... X5MEI1 34533457
    318 7mpq:K (2.35) BS02 5GP ? GO:0003676 ... X5MEI1 34533457
    319 7mpq:K (2.35) BS03 5GP ? GO:0003676 ... X5MEI1 34533457
    320 7mpq:M (2.35) BS01 5GP ? GO:0003676 ... X5MEI1 34533457
    321 7mpq:M (2.35) BS02 5GP ? GO:0003676 ... X5MEI1 34533457
    322 7mpq:M (2.35) BS05 5GP ? GO:0003676 ... X5MEI1 34533457
    323 7mpq:O (2.35) BS01 5GP ? GO:0003676 ... X5MEI1 34533457
    324 7mpq:O (2.35) BS02 5GP ? GO:0003676 ... X5MEI1 34533457
    325 7mpq:O (2.35) BS03 5GP ? GO:0003676 ... X5MEI1 34533457
    326 7p3b:A (2.3) BS01 5GP 6.5.1.8 GO:0001701 ... Q9Y3I0 34854379
    327 7p3b:B (2.3) BS01 5GP 6.5.1.8 GO:0001701 ... Q9Y3I0 34854379
    328 7r50:A (2.5) BS01 5GP 1.7.1.7 GO:0003824 ... A0QYE8 35338694
    329 7r50:B (2.5) BS01 5GP 1.7.1.7 GO:0003824 ... A0QYE8 35338694
    330 7r50:C (2.5) BS01 5GP 1.7.1.7 GO:0003824 ... A0QYE8 35338694
    331 7r50:D (2.5) BS01 5GP 1.7.1.7 GO:0003824 ... A0QYE8 35338694
    332 7r50:E (2.5) BS01 5GP 1.7.1.7 GO:0003824 ... A0QYE8 35338694
    333 7r50:F (2.5) BS01 5GP 1.7.1.7 GO:0003824 ... A0QYE8 35338694
    334 7r50:G (2.5) BS01 5GP 1.7.1.7 GO:0003824 ... A0QYE8 35338694
    335 7r50:H (2.5) BS01 5GP 1.7.1.7 GO:0003824 ... A0QYE8 35338694
    336 7r50:I (2.5) BS01 5GP 1.7.1.7 GO:0003824 ... A0QYE8 35338694
    337 7r50:J (2.5) BS01 5GP 1.7.1.7 GO:0003824 ... A0QYE8 35338694
    338 7r50:K (2.5) BS01 5GP 1.7.1.7 GO:0003824 ... A0QYE8 35338694
    339 7r50:L (2.5) BS01 5GP 1.7.1.7 GO:0003824 ... A0QYE8 35338694
    340 7r50:M (2.5) BS01 5GP 1.7.1.7 GO:0003824 ... A0QYE8 35338694
    341 7r50:N (2.5) BS01 5GP 1.7.1.7 GO:0003824 ... A0QYE8 35338694
    342 7r50:O (2.5) BS01 5GP 1.7.1.7 GO:0003824 ... A0QYE8 35338694
    343 7r50:P (2.5) BS01 5GP 1.7.1.7 GO:0003824 ... A0QYE8 35338694
    344 7s5e:A (2.4) BS01 5GP 2.7.4.8 GO:0004385 ... B2FT06 N/A
    345 7s5e:B (2.4) BS01 5GP 2.7.4.8 GO:0004385 ... B2FT06 N/A
    346 7s5e:D (2.4) BS01 5GP 2.7.4.8 GO:0004385 ... B2FT06 N/A
    347 7s5e:E (2.4) BS01 5GP 2.7.4.8 GO:0004385 ... B2FT06 N/A
    348 7s5e:F (2.4) BS01 5GP 2.7.4.8 GO:0004385 ... B2FT06 N/A
    349 7s5e:H (2.4) BS01 5GP 2.7.4.8 GO:0004385 ... B2FT06 N/A
    350 7u5f:A (2.0) BS01 5GP 2.7.4.8 GO:0004385 ... Q9HTM2 N/A
    351 7u5f:B (2.0) BS01 5GP 2.7.4.8 GO:0004385 ... Q9HTM2 N/A
    352 7u5f:C (2.0) BS01 5GP 2.7.4.8 GO:0004385 ... Q9HTM2 N/A
    353 7u5f:D (2.0) BS01 5GP 2.7.4.8 GO:0004385 ... Q9HTM2 N/A
    354 7v1g:A (1.38) BS03 5GP 3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0004482 ... C4TPE0 35758665
    355 7va2:A (2.3) BS01 5GP 3.1.15.- GO:0000175 ... P57665 N/A
    356 7xxk:A (2.0) BS01 5GP ? GO:0003723 ... P0DTC9 N/A
    357 7xxk:B (2.0) BS01 5GP ? GO:0003723 ... P0DTC9 N/A
    358 7xxk:C (2.0) BS01 5GP ? GO:0003723 ... P0DTC9 N/A
    359 8dcg:A (2.35) BS02 5GP 3.1.-.-
    6.5.1.8    		 GO:0006396 ... O59245 36130078
    360 8dcg:B (2.35) BS02 5GP 3.1.-.-
    6.5.1.8    		 GO:0006396 ... O59245 36130078
    361 8egl:A (2.35) BS02 5GP 2.7.4.8 GO:0004385 ... Q9HTM2 N/A
    362 8egl:B (2.35) BS02 5GP 2.7.4.8 GO:0004385 ... Q9HTM2 N/A
    363 8egl:C (2.35) BS02 5GP 2.7.4.8 GO:0004385 ... Q9HTM2 N/A
    364 8egl:D (2.35) BS02 5GP 2.7.4.8 GO:0004385 ... Q9HTM2 N/A
    365 8egl:E (2.35) BS02 5GP 2.7.4.8 GO:0004385 ... Q9HTM2 N/A
    366 8egl:F (2.35) BS02 5GP 2.7.4.8 GO:0004385 ... Q9HTM2 N/A
    367 8egl:G (2.35) BS02 5GP 2.7.4.8 GO:0004385 ... Q9HTM2 N/A
    368 8egl:H (2.35) BS02 5GP 2.7.4.8 GO:0004385 ... Q9HTM2 N/A
    369 8egl:I (2.35) BS02 5GP 2.7.4.8 GO:0004385 ... Q9HTM2 N/A
    370 8egl:J (2.35) BS02 5GP 2.7.4.8 GO:0004385 ... Q9HTM2 N/A
    371 8egl:K (2.35) BS02 5GP 2.7.4.8 GO:0004385 ... Q9HTM2 N/A
    372 8egl:L (2.35) BS02 5GP 2.7.4.8 GO:0004385 ... Q9HTM2 N/A
    373 8odo:A (2.2) BS01 5GP 6.5.1.8 GO:0001701 ... Q9Y3I0 38493148
    374 8odo:C (2.2) BS01 5GP 6.5.1.8 GO:0001701 ... Q9Y3I0 38493148
    375 8odo:E (2.2) BS01 5GP 6.5.1.8 GO:0001701 ... Q9Y3I0 38493148
    376 8odo:G (2.2) BS01 5GP 6.5.1.8 GO:0001701 ... Q9Y3I0 38493148
    377 8pkz:A (-1.00) BS01 5GP N/A N/A Q72H73 N/A
    378 8pkz:A (-1.00) BS02 5GP N/A N/A Q72H73 N/A
    379 8qjo:A (1.85) BS04 5GP N/A N/A N/A N/A
    380 8qjo:B (1.85) BS04 5GP N/A N/A N/A N/A
    381 8vr0:A (2.25) BS01 5GP 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    382 8vr0:B (2.25) BS01 5GP 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    383 8vr0:C (2.25) BS01 5GP 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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