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BioLiP
Download all results in tab-seperated text for 8 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5csp:A (1.5) BS01 54G 2.7.11.1 GO:0004672 ... P68400 28451126 MOAD: Kd=58uM
    PDBbind: -logKd/Ki=4.24, Kd=58uM
    BindingDB: Kd=58000nM
    2 5cu0:A (2.18) BS03 54G 2.7.11.1 GO:0004672 ... P68400 28495381 BindingDB: Kd=58000nM
    3 5cu0:B (2.18) BS03 54G 2.7.11.1 GO:0004672 ... P68400 28495381 BindingDB: Kd=58000nM
    4 5cu2:A (1.705) BS04 54G 2.7.11.1 GO:0004672 ... P68400 28495381 PDBbind: -logKd/Ki=4.24, Kd=58uM
    BindingDB: Kd=58000nM
    5 5cu2:B (1.705) BS03 54G 2.7.11.1 GO:0004672 ... P68400 28495381 BindingDB: Kd=58000nM
    6 5rt9:A (1.01) BS01 54G 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 N/A P0DTD1 33853786
    7 6ehk:A (1.4) BS02 54G 2.7.11.1 GO:0004672 ... P68400 29732088 BindingDB: Kd=58000nM
    8 7zt7:A (1.84) BS01 54G ? N/A Q95460 37382893
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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