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BioLiP
Download all results in tab-seperated text for 48 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1eoc:B (2.25) BS02 4NC 1.13.11.3 GO:0003824 ... P20372 10891075 MOAD: Ki=0.9uM
    PDBbind: -logKd/Ki=6.05, Ki=0.9uM
    2 1no3:A (2.15) BS02 4NC 1.13.11.58 GO:0005737 ... P09186 14993710
    3 2buu:A (1.8) BS01 4NC 1.13.11.3 GO:0003824 ... P20371 N/A
    4 2buu:B (1.8) BS02 4NC 1.13.11.3 GO:0003824 ... P20372 N/A
    5 2buz:A (1.8) BS01 4NC 1.13.11.3 GO:0003824 ... P20371 N/A
    6 2buz:B (1.8) BS02 4NC 1.13.11.3 GO:0003824 ... P20372 N/A
    7 3lxv:B (1.9) BS01 4NC 1.13.11.3 GO:0003824 ... P00436 N/A
    8 3lxv:C (1.9) BS02 4NC 1.13.11.3 GO:0003824 ... P00436 N/A
    9 3lxv:M (1.9) BS02 4NC 1.13.11.3 GO:0003824 ... P00437 N/A
    10 3lxv:N (1.9) BS02 4NC 1.13.11.3 GO:0003824 ... P00437 N/A
    11 3lxv:O (1.9) BS01 4NC 1.13.11.3 GO:0003824 ... P00437 N/A
    12 3lxv:O (1.9) BS03 4NC 1.13.11.3 GO:0003824 ... P00437 N/A
    13 3ojk:A (1.68) BS02 4NC 1.13.11.15 GO:0046872 ... Q45135 21153851
    14 3ojk:C (1.68) BS02 4NC 1.13.11.15 GO:0046872 ... Q45135 21153851
    15 3ojk:D (1.68) BS02 4NC 1.13.11.15 GO:0046872 ... Q45135 21153851
    16 3vsi:B (2.5) BS02 4NC 1.13.11.74
    1.13.11.76    		 GO:0008198 ... Q6J1Z6 23275161
    17 3vsi:D (2.5) BS02 4NC 1.13.11.74
    1.13.11.76    		 GO:0008198 ... Q6J1Z6 23275161
    18 4ghe:C (1.6) BS02 4NC 1.13.11.15 GO:0046872 ... Q45135 23066739
    19 4ghf:A (1.67) BS02 4NC 1.13.11.15 GO:0046872 ... Q45135 23066739
    20 4ghf:C (1.67) BS02 4NC 1.13.11.15 GO:0046872 ... Q45135 23066739
    21 4ghf:D (1.67) BS02 4NC 1.13.11.15 GO:0046872 ... Q45135 23066739
    22 4ghh:C (1.55) BS02 4NC 1.13.11.15 GO:0046872 ... Q45135 23066739
    23 4ghh:D (1.55) BS02 4NC 1.13.11.15 GO:0046872 ... Q45135 23066739
    24 4z6u:C (1.48) BS02 4NC ? GO:0046872 ... Q45135 26267790
    25 4z6v:C (1.37) BS02 4NC ? GO:0046872 ... Q45135 26267790
    26 4z6w:A (1.57) BS02 4NC ? GO:0046872 ... Q45135 26267790
    27 4z6w:B (1.57) BS03 4NC ? GO:0046872 ... Q45135 26267790
    28 4z6w:C (1.57) BS02 4NC ? GO:0046872 ... Q45135 26267790
    29 4z6w:D (1.57) BS02 4NC ? GO:0046872 ... Q45135 26267790
    30 5chr:A (1.98) BS02 4NC ? GO:0004601 ... Q9NAV7 27070125 MOAD: Kd=40uM
    31 5chr:B (1.98) BS02 4NC ? GO:0004601 ... Q9NAV7 27070125 MOAD: Kd=40uM
    32 5phd:A (1.359) BS02 4NC 1.14.11.66 N/A Q6B0I6 28436492
    33 5phd:A (1.359) BS03 4NC 1.14.11.66 N/A Q6B0I6 28436492
    34 5phd:A (1.359) BS04 4NC 1.14.11.66 N/A Q6B0I6 28436492
    35 5phd:A (1.359) BS05 4NC 1.14.11.66 N/A Q6B0I6 28436492
    36 6sdn:A (1.51) BS02 4NC ? GO:0004659 ... Q8WS26 N/A
    37 6w54:A (1.5) BS01 4NC ? N/A A0A060TAG5 33542397
    38 6ze6:A (1.26) BS02 4NC ? GO:0016491 ... G0SAW6 34076590
    39 6ze6:A (1.26) BS03 4NC ? GO:0016491 ... G0SAW6 34076590
    40 6ze6:B (1.26) BS02 4NC ? GO:0016491 ... G0SAW6 34076590
    41 6ze6:B (1.26) BS03 4NC ? GO:0016491 ... G0SAW6 34076590
    42 7jmv:A (1.57) BS01 4NC ? GO:0046872 ... A0A175WC91 33542397
    43 7pby:A (1.13) BS04 4NC 3.1.3.35
    3.1.3.5
    3.1.3.89
    3.1.3.91
    3.1.3.99    		 GO:0000166 ... P21589 34403084
    44 7pby:A (1.13) BS05 4NC 3.1.3.35
    3.1.3.5
    3.1.3.89
    3.1.3.91
    3.1.3.99    		 GO:0000166 ... P21589 34403084
    45 8akb:A (2.13) BS03 4NC 2.3.1.-
    2.3.1.286
    2.4.2.-    		 GO:0070403 ... Q8N6T7 N/A
    46 8akb:B (2.13) BS03 4NC 2.3.1.-
    2.3.1.286
    2.4.2.-    		 GO:0070403 ... Q8N6T7 N/A
    47 8vkd:AAA (1.4) BS02 4NC N/A GO:0004601 ... Q9NAV8 38959050
    48 8vkd:BBB (1.4) BS02 4NC N/A GO:0004601 ... Q9NAV8 38959050
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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