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BioLiP
Download all results in tab-seperated text for 13 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4xux:A (1.75) BS01 4D6 3.5.2.6 GO:0008800 ... P05364 25782055
    2 4xuz:A (1.5) BS01 4D6 3.5.2.6 GO:0008800 ... S5LVN3 25782055 PDBbind: -logKd/Ki=7.36, Ki=0.044uM
    3 6td0:A (0.99) BS01 4D6 3.5.2.6 GO:0008800 ... Q9F663 33479650
    4 6v7h:A (1.0) BS01 4D6 3.5.2.6 GO:0008800 ... Q9L5C7 32778546
    5 6v7h:B (1.0) BS01 4D6 3.5.2.6 GO:0008800 ... Q9L5C7 32778546
    6 6v7i:A (1.25) BS01 4D6 3.5.2.6 GO:0008800 ... Q9F663 32778546
    7 7auh:A (2.012) BS01 4D6 3.4.16.4 GO:0000917 ... G3XD46 34337941
    8 7ly1:A (2.2) BS01 4D6 3.4.16.4 GO:0000917 ... G3XD46 34653211
    9 7tc1:A (1.16) BS01 4D6 3.5.2.6 GO:0008800 ... Q9F663 35341315
    10 8btw:A (1.9) BS01 4D6 3.5.2.6 GO:0005576 ... P9WKD3 37335937
    11 8bv4:A (1.95) BS01 4D6 3.5.2.6 GO:0005576 ... P9WKD3 37335937
    12 8c5o:A (2.3) BS01 4D6 ? GO:0008658 ... Q5HNZ7 N/A
    13 8tmt:A (1.7) BS01 4D6 3.5.2.6 GO:0008800 ... A0A4Y5JTU1 38000656
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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