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BioLiP
Download all results in tab-seperated text for 10 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3o4v:A (1.75) BS01 4CT 3.2.2.9 GO:0003824 ... P0AF12 N/A BindingDB: Kd=0.000047nM
    2 3o4v:A (1.75) BS02 4CT 3.2.2.9 GO:0003824 ... P0AF12 N/A BindingDB: Kd=0.000047nM
    3 3o4v:B (1.75) BS01 4CT 3.2.2.9 GO:0003824 ... P0AF12 N/A BindingDB: Kd=0.000047nM
    4 3ozc:A (1.93) BS01 4CT 2.4.2.28 GO:0003824 ... Q13126 N/A BindingDB: Kd=0.010nM
    5 3ozd:A (2.1) BS01 4CT 2.4.2.28 GO:0003824 ... Q13126 N/A BindingDB: Kd=0.010nM
    6 3ozd:B (2.1) BS01 4CT 2.4.2.28 GO:0003824 ... Q13126 N/A BindingDB: Kd=0.010nM
    7 5k1z:A (2.25) BS01 4CT 3.2.2.30
    3.2.2.9    		 GO:0005829 ... Q9ZMY2 27856757
    8 5kb3:A (1.399) BS01 4CT 3.2.2.30
    3.2.2.9    		 GO:0003824 ... Q9ZMY2 27856757 MOAD: Kd=570pM
    9 6x6r:A (2.02) BS01 4CT ? GO:0005576 ... F5B5W8 N/A
    10 6x6r:B (2.02) BS02 4CT ? GO:0005576 ... F5B5W8 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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