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BioLiP
Download all results in tab-seperated text for 12 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3lb3:A (1.85) BS02 4CH ? GO:0004601 ... Q9NAV8 20816071 MOAD: Kd=1.78mM
    2 3lb3:B (1.85) BS02 4CH ? GO:0004601 ... Q9NAV8 20816071 MOAD: Kd=1.78mM
    3 4awu:A (1.69) BS02 4CH 1.6.99.1 GO:0000166 ... Q8EEC8 N/A
    4 4awu:A (1.69) BS03 4CH 1.6.99.1 GO:0000166 ... Q8EEC8 N/A
    5 4awu:A (1.69) BS04 4CH 1.6.99.1 GO:0000166 ... Q8EEC8 N/A
    6 4df2:A (2.021) BS02 4CH ? GO:0000166 ... A3LT82 N/A
    7 5m8w:A (2.279) BS04 4CH 1.21.99.5 GO:0005737 ... O68252 28671181
    8 5m8w:B (2.279) BS04 4CH 1.21.99.5 GO:0005737 ... O68252 28671181
    9 7dqw:A (1.88) BS02 4CH 5.6.2.2 GO:0003677 ... P0AES6 34098257
    10 7dqw:B (1.88) BS02 4CH 5.6.2.2 GO:0003677 ... P0AES6 34098257
    11 7m0h:A (1.91) BS02 4CH ? GO:0004601 ... Q9NAV7 N/A
    12 7m0h:B (1.91) BS02 4CH ? GO:0004601 ... Q9NAV7 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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