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BioLiP
Download all results in tab-seperated text for 15 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4jn2:A (1.71) BS01 4CC N/A N/A N/A 23476049 PDBbind: -logKd/Ki=11.68, Kd=2.1pM
    2 4jn2:B (1.71) BS01 4CC N/A N/A N/A 23476049 PDBbind: -logKd/Ki=11.68, Kd=2.1pM
    3 4jn2:H (1.71) BS01 4CC N/A N/A N/A 23476049
    4 4jn2:L (1.71) BS01 4CC N/A N/A N/A 23476049
    5 4yhi:A (1.9) BS01 4CC N/A N/A N/A 26047352 MOAD: ic50=4.6nM
    6 4yhi:B (1.9) BS01 4CC N/A N/A N/A 26047352
    7 4yhi:H (1.9) BS01 4CC N/A N/A N/A 26047352 MOAD: ic50=4.6nM
    8 4yhi:L (1.9) BS01 4CC N/A N/A N/A 26047352
    9 4yhk:H (2.21) BS01 4CC N/A N/A N/A 26047352 MOAD: ic50=4.6nM
    10 4yhk:L (2.21) BS01 4CC N/A N/A N/A 26047352
    11 4yhm:H (2.16) BS01 4CC N/A N/A N/A 26047352 MOAD: Kd=173pM
    PDBbind: -logKd/Ki=9.76, Kd=173pM
    12 4yhm:L (2.16) BS01 4CC N/A N/A N/A 26047352 PDBbind: -logKd/Ki=9.76, Kd=173pM
    13 4yho:H (1.82) BS01 4CC N/A N/A N/A 26047352 MOAD: Kd=18pM
    PDBbind: -logKd/Ki=10.74, Kd=18pM
    14 4yho:L (1.82) BS01 4CC N/A N/A N/A 26047352 PDBbind: -logKd/Ki=10.74, Kd=18pM
    15 8tqs:H (2.207) BS02 4CC 3.4.21.5 GO:0004252 ... P00734 38730234
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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