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BioLiP
Download all results in tab-seperated text for 14 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3hyz:A (2.3) BS01 42C 3.6.4.10 GO:0005524 ... P07900 N/A
    2 3hyz:B (2.3) BS01 42C 3.6.4.10 GO:0005524 ... P07900 N/A
    3 3hz1:A (2.3) BS01 42C 3.6.4.10 GO:0005524 ... P07900 N/A
    4 4fcp:A (2.0) BS01 42C 3.6.4.10 GO:0005524 ... P07900 23018093
    5 4fcp:B (2.0) BS01 42C 3.6.4.10 GO:0005524 ... P07900 23018093
    6 7bjh:A (1.8) BS01 42C 2.7.11.1 GO:0000077 ... O14757 34184879
    7 7ulj:A (1.82) BS01 42C ? GO:0005524 ... P08238 36938943
    8 7ulj:B (1.82) BS01 42C ? GO:0005524 ... P08238 36938943
    9 7ulj:C (1.82) BS01 42C ? GO:0005524 ... P08238 36938943
    10 7ulj:D (1.82) BS01 42C ? GO:0005524 ... P08238 36938943
    11 7ulk:A (2.34) BS01 42C ? GO:0005524 ... Q12931 36938943
    12 7ulk:B (2.34) BS01 42C ? GO:0005524 ... Q12931 36938943
    13 7ull:A (2.31) BS01 42C ? GO:0005524 ... P14625 36938943
    14 7ull:B (2.31) BS01 42C ? GO:0005524 ... P14625 36938943
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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