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BioLiP
Download all results in tab-seperated text for 41 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4xdc:A (1.63) BS01 402 1.12.7.2 GO:0005506 ... P29166 29896366
    2 4xdc:B (1.63) BS01 402 1.12.7.2 GO:0005506 ... P29166 29896366
    3 5la3:A (2.29) BS01 402 1.12.7.2 GO:0005506 ... P29166 28722011
    4 5la3:B (2.29) BS01 402 1.12.7.2 GO:0005506 ... P29166 28722011
    5 6gly:A (2.09) BS01 402 1.12.7.2 GO:0005506 ... P29166 30413719
    6 6gly:B (2.09) BS01 402 1.12.7.2 GO:0005506 ... P29166 30413719
    7 6glz:A (2.02) BS01 402 1.12.7.2 GO:0005506 ... P29166 30413719
    8 6glz:B (2.02) BS01 402 1.12.7.2 GO:0005506 ... P29166 30413719
    9 6gm0:A (2.11) BS01 402 1.12.7.2 GO:0005506 ... P29166 30413719
    10 6gm0:B (2.11) BS01 402 1.12.7.2 GO:0005506 ... P29166 30413719
    11 6gm1:A (2.05) BS01 402 1.12.7.2 GO:0005506 ... P29166 30413719
    12 6gm1:B (2.05) BS01 402 1.12.7.2 GO:0005506 ... P29166 30413719
    13 6gm2:A (2.76) BS01 402 1.12.7.2 GO:0005506 ... P29166 30413719
    14 6gm2:B (2.76) BS01 402 1.12.7.2 GO:0005506 ... P29166 30413719
    15 6gm3:A (2.22) BS01 402 1.12.7.2 GO:0005506 ... P29166 30413719
    16 6gm3:B (2.22) BS01 402 1.12.7.2 GO:0005506 ... P29166 30413719
    17 6gm4:A (1.97) BS01 402 1.12.7.2 GO:0005506 ... P29166 30413719
    18 6gm4:B (1.97) BS01 402 1.12.7.2 GO:0005506 ... P29166 30413719
    19 6gm8:A (1.96) BS01 402 1.12.7.2 GO:0005506 ... P29166 30413719
    20 6gm8:B (1.96) BS01 402 1.12.7.2 GO:0005506 ... P29166 30413719
    21 6n59:A (1.02) BS01 402 1.12.7.2 GO:0005506 ... P29166 31816235
    22 6n6p:A (1.95) BS01 402 1.12.7.2 GO:0005506 ... P29166 31816235
    23 6nac:A (1.55) BS01 402 1.12.7.2 GO:0005506 ... P29166 31816235
    24 6ttl:A (2.9) BS01 402 ? GO:0005506 ... A0A1I9RYV3 33531463
    25 6ttl:B (2.9) BS01 402 ? GO:0005506 ... A0A1I9RYV3 33531463
    26 6yf4:A (1.77) BS01 402 1.12.7.2 GO:0005506 ... P29166 32796105
    27 6yf4:B (1.77) BS01 402 1.12.7.2 GO:0005506 ... P29166 32796105
    28 7qhf:A (1.63) BS01 402 1.12.7.2 GO:0005506 ... P29166 37830175
    29 7qhf:B (1.63) BS01 402 1.12.7.2 GO:0005506 ... P29166 37830175
    30 7qv7:D (3.4) BS03 402 1.12.7.2 GO:0005506 ... A0A097ATH7 35859174
    31 7qv7:K (3.4) BS03 402 1.12.7.2 GO:0005506 ... A0A097ATH7 35859174
    32 7qv7:Q (3.4) BS04 402 1.12.7.2 GO:0005506 ... A0A097ATH7 35859174
    33 7qv7:R (3.4) BS03 402 1.12.7.2 GO:0005506 ... A0A097ATH7 35859174
    34 7qv7:V (3.4) BS03 402 1.12.7.2 GO:0005506 ... A0A097ATH7 35859174
    35 7qv7:Z (3.4) BS04 402 1.12.7.2 GO:0005506 ... A0A097ATH7 35859174
    36 8cjy:A (1.6) BS01 402 1.12.7.2 GO:0005506 ... P29166 37830175
    37 8cjy:B (1.6) BS01 402 1.12.7.2 GO:0005506 ... P29166 37830175
    38 8pvm:A (1.38) BS01 402 1.12.7.2 GO:0005506 ... P29166 37983562
    39 8pvm:B (1.38) BS01 402 1.12.7.2 GO:0005506 ... P29166 37983562
    40 8qm3:A (1.53) BS01 402 1.12.7.2 GO:0005506 ... P29166 37983562
    41 8qm3:B (1.53) BS01 402 1.12.7.2 GO:0005506 ... P29166 37983562
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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