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BioLiP
Download all results in tab-seperated text for 11 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5zgb:F (3.63) BS07 3XQ ? GO:0009522 ... Q85FS9 29632169
    2 5zgb:J (3.63) BS06 3XQ ? GO:0009507 ... Q85FS8 29632169
    3 5zgh:J (3.82) BS06 3XQ ? GO:0009507 ... Q85FS8 29632169
    4 7y5e:B2 (3.3) BS46 3XQ 1.97.1.12 GO:0000287 ... W0RYU6 36922595
    5 7y5e:J2 (3.3) BS05 3XQ ? GO:0009507 ... W0RYG9 36922595
    6 7y7a:B7 (4.3) BS46 3XQ 1.97.1.12 GO:0000287 ... W0RYU6 36922595
    7 7y7a:Bo (4.3) BS46 3XQ 1.97.1.12 GO:0000287 ... W0RYU6 36922595
    8 7y7a:F7 (4.3) BS08 3XQ ? GO:0009507 ... W0RZ71 36922595
    9 7y7a:Fo (4.3) BS08 3XQ ? GO:0009507 ... W0RZ71 36922595
    10 7y7a:J7 (4.3) BS05 3XQ ? GO:0009507 ... W0RYG9 36922595
    11 7y7a:Jo (4.3) BS05 3XQ ? GO:0009507 ... W0RYG9 36922595
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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