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BioLiP
Download all results in tab-seperated text for 29 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4pdk:A (2.8) BS01 3VV ? GO:0000062 ... Q9KQU8 25607896 PDBbind: -logKd/Ki=8.22, Kd=6nM
    2 4pdk:A (2.8) BS02 3VV ? GO:0000062 ... Q9KQU8 25607896 PDBbind: -logKd/Ki=8.22, Kd=6nM
    3 4pdk:A (2.8) BS03 3VV ? GO:0000062 ... Q9KQU8 25607896 PDBbind: -logKd/Ki=8.22, Kd=6nM
    4 4pdk:A (2.8) BS04 3VV ? GO:0000062 ... Q9KQU8 25607896 PDBbind: -logKd/Ki=8.22, Kd=6nM
    5 4pdk:B (2.8) BS01 3VV ? GO:0000062 ... Q9KQU8 25607896 PDBbind: -logKd/Ki=8.22, Kd=6nM
    6 4pdk:B (2.8) BS02 3VV ? GO:0000062 ... Q9KQU8 25607896 PDBbind: -logKd/Ki=8.22, Kd=6nM
    7 4pdk:B (2.8) BS03 3VV ? GO:0000062 ... Q9KQU8 25607896 PDBbind: -logKd/Ki=8.22, Kd=6nM
    8 6p2j:A (3.0) BS01 3VV 2.3.1.26 GO:0000062 ... P35610 32433614
    9 6p2j:B (3.0) BS01 3VV 2.3.1.26 GO:0000062 ... P35610 32433614
    10 6p2p:A (3.1) BS01 3VV 2.3.1.26 GO:0000062 ... P35610 32433614
    11 6p2p:B (3.1) BS01 3VV 2.3.1.26 GO:0000062 ... P35610 32433614
    12 6p2p:C (3.1) BS01 3VV 2.3.1.26 GO:0000062 ... P35610 32433614
    13 6p2p:D (3.1) BS01 3VV 2.3.1.26 GO:0000062 ... P35610 32433614
    14 6vp0:C (3.1) BS03 3VV 2.3.1.20
    2.3.1.76    		 GO:0003846 ... O75907 32433610
    15 6vp0:E (3.1) BS02 3VV 2.3.1.20
    2.3.1.76    		 GO:0003846 ... O75907 32433610
    16 6vum:B (3.67) BS01 3VV 2.3.1.26 GO:0000062 ... P35610 32433613
    17 6vum:D (3.67) BS02 3VV 2.3.1.26 GO:0000062 ... P35610 32433613
    18 6vz1:A (3.2) BS03 3VV 2.3.1.20
    2.3.1.76    		 GO:0003846 ... O75907 32433611
    19 6vz1:B (3.2) BS05 3VV 2.3.1.20
    2.3.1.76    		 GO:0003846 ... O75907 32433611
    20 6wf2:A (3.51) BS03 3VV 1.14.19.1 GO:0004768 ... P13516 32470559
    21 6wf2:B (3.51) BS03 3VV 1.14.19.1 GO:0004768 ... P13516 32470559
    22 7shn:A (3.1) BS01 3VV 3.1.2.-
    7.6.2.-    		 GO:0000038 ... P33897 34754073
    23 7shn:B (3.1) BS01 3VV 3.1.2.-
    7.6.2.-    		 GO:0000038 ... P33897 34754073
    24 8fhi:A (3.25) BS03 3VV ? GO:0005216 ... Q9XSM3 37735536
    25 8fhi:B (3.25) BS04 3VV ? GO:0005216 ... Q9XSM3 37735536
    26 8fhi:C (3.25) BS04 3VV ? GO:0005216 ... Q9XSM3 37735536
    27 8fhi:D (3.25) BS04 3VV ? GO:0005216 ... Q9XSM3 37735536
    28 8ghe:A (2.05) BS02 3VV 1.13.11.-
    1.13.11.31
    1.13.11.33
    3.3.2.-    		 GO:0001676 ... P18054 37506345
    29 8ghe:B (2.05) BS02 3VV 1.13.11.-
    1.13.11.31
    1.13.11.33
    3.3.2.-    		 GO:0001676 ... P18054 37506345
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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