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BioLiP
Download all results in tab-seperated text for 73 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5f1u:A (2.35) BS01 3VN 4.3.3.7 GO:0005737 ... Q9PPB4 26836694 MOAD: ic50=400nM
    PDBbind: -logKd/Ki=6.40, IC50=400nM
    2 5f1u:B (2.35) BS01 3VN 4.3.3.7 GO:0005737 ... Q9PPB4 26836694 PDBbind: -logKd/Ki=6.40, IC50=400nM
    3 5f1u:C (2.35) BS01 3VN 4.3.3.7 GO:0005737 ... Q9PPB4 26836694
    4 5f1u:D (2.35) BS01 3VN 4.3.3.7 GO:0005737 ... Q9PPB4 26836694 MOAD: ic50=400nM
    5 5f1v:A (2.2) BS01 3VN 4.3.3.7 GO:0005737 ... Q9PPB4 26836694 MOAD: Ki~200nM
    PDBbind: -logKd/Ki=6.85, Ki=140nM
    6 5f1v:A (2.2) BS02 3VN 4.3.3.7 GO:0005737 ... Q9PPB4 26836694 MOAD: Ki~200nM
    PDBbind: -logKd/Ki=6.85, Ki=140nM
    7 5f1v:B (2.2) BS01 3VN 4.3.3.7 GO:0005737 ... Q9PPB4 26836694 MOAD: Ki~200nM
    8 5f1v:C (2.2) BS01 3VN 4.3.3.7 GO:0005737 ... Q9PPB4 26836694
    9 5f1v:D (2.2) BS01 3VN 4.3.3.7 GO:0005737 ... Q9PPB4 26836694 MOAD: Ki~200nM
    10 5f1v:D (2.2) BS02 3VN 4.3.3.7 GO:0005737 ... Q9PPB4 26836694 MOAD: Ki~200nM
    11 7kh4:A (1.75) BS01 3VN 4.3.3.7 GO:0005737 ... Q9PPB4 N/A
    12 7kh4:B (1.75) BS01 3VN 4.3.3.7 GO:0005737 ... Q9PPB4 N/A
    13 7kh4:C (1.75) BS01 3VN 4.3.3.7 GO:0005737 ... Q9PPB4 N/A
    14 7kh4:D (1.75) BS01 3VN 4.3.3.7 GO:0005737 ... Q9PPB4 N/A
    15 7kh4:E (1.75) BS01 3VN 4.3.3.7 GO:0005737 ... Q9PPB4 N/A
    16 7kh4:F (1.75) BS01 3VN 4.3.3.7 GO:0005737 ... Q9PPB4 N/A
    17 7kkd:A (1.6) BS01 3VN 4.3.3.7 GO:0005737 ... Q9PPB4 N/A
    18 7kkd:B (1.6) BS01 3VN 4.3.3.7 GO:0005737 ... Q9PPB4 N/A
    19 7kkd:C (1.6) BS01 3VN 4.3.3.7 GO:0005737 ... Q9PPB4 N/A
    20 7kkd:D (1.6) BS01 3VN 4.3.3.7 GO:0005737 ... Q9PPB4 N/A
    21 7kkd:E (1.6) BS01 3VN 4.3.3.7 GO:0005737 ... Q9PPB4 N/A
    22 7kkd:F (1.6) BS01 3VN 4.3.3.7 GO:0005737 ... Q9PPB4 N/A
    23 7kkt:A (1.71) BS01 3VN 4.3.3.7 GO:0005737 ... Q9PPB4 N/A
    24 7kkt:B (1.71) BS01 3VN 4.3.3.7 GO:0005737 ... Q9PPB4 N/A
    25 7kkt:C (1.71) BS01 3VN 4.3.3.7 GO:0005737 ... Q9PPB4 N/A
    26 7kkt:D (1.71) BS01 3VN 4.3.3.7 GO:0005737 ... Q9PPB4 N/A
    27 7kkt:E (1.71) BS01 3VN 4.3.3.7 GO:0005737 ... Q9PPB4 N/A
    28 7kkt:F (1.71) BS01 3VN 4.3.3.7 GO:0005737 ... Q9PPB4 N/A
    29 7km0:A (2.6) BS01 3VN 4.3.3.7 GO:0005737 ... Q9PPB4 N/A
    30 7km0:B (2.6) BS01 3VN 4.3.3.7 GO:0005737 ... Q9PPB4 N/A
    31 7km0:C (2.6) BS01 3VN 4.3.3.7 GO:0005737 ... Q9PPB4 N/A
    32 7km0:D (2.6) BS01 3VN 4.3.3.7 GO:0005737 ... Q9PPB4 N/A
    33 7km0:E (2.6) BS01 3VN 4.3.3.7 GO:0005737 ... Q9PPB4 N/A
    34 7km0:F (2.6) BS01 3VN 4.3.3.7 GO:0005737 ... Q9PPB4 N/A
    35 7km1:A (1.84) BS01 3VN 4.3.3.7 GO:0005737 ... Q9PPB4 N/A
    36 7km1:B (1.84) BS01 3VN 4.3.3.7 GO:0005737 ... Q9PPB4 N/A
    37 7km1:C (1.84) BS01 3VN 4.3.3.7 GO:0005737 ... Q9PPB4 N/A
    38 7km1:D (1.84) BS01 3VN 4.3.3.7 GO:0005737 ... Q9PPB4 N/A
    39 7km1:E (1.84) BS01 3VN 4.3.3.7 GO:0005737 ... Q9PPB4 N/A
    40 7km1:F (1.84) BS01 3VN 4.3.3.7 GO:0005737 ... Q9PPB4 N/A
    41 7knz:A (2.28) BS01 3VN 4.3.3.7 GO:0005737 ... Q9PPB4 N/A
    42 7knz:B (2.28) BS01 3VN 4.3.3.7 GO:0005737 ... Q9PPB4 N/A
    43 7knz:C (2.28) BS01 3VN 4.3.3.7 GO:0005737 ... Q9PPB4 N/A
    44 7knz:D (2.28) BS01 3VN 4.3.3.7 GO:0005737 ... Q9PPB4 N/A
    45 7knz:E (2.28) BS01 3VN 4.3.3.7 GO:0005737 ... Q9PPB4 N/A
    46 7knz:F (2.28) BS01 3VN 4.3.3.7 GO:0005737 ... Q9PPB4 N/A
    47 7kpe:A (2.06) BS01 3VN 4.3.3.7 GO:0005737 ... Q9PPB4 N/A
    48 7kpe:B (2.06) BS01 3VN 4.3.3.7 GO:0005737 ... Q9PPB4 N/A
    49 7kpe:C (2.06) BS01 3VN 4.3.3.7 GO:0005737 ... Q9PPB4 N/A
    50 7kpe:D (2.06) BS01 3VN 4.3.3.7 GO:0005737 ... Q9PPB4 N/A
    51 7kpe:E (2.06) BS02 3VN 4.3.3.7 GO:0005737 ... Q9PPB4 N/A
    52 7kpe:F (2.06) BS01 3VN 4.3.3.7 GO:0005737 ... Q9PPB4 N/A
    53 7kto:A (2.13) BS01 3VN 4.3.3.7 GO:0005737 ... Q9PPB4 N/A
    54 7kto:B (2.13) BS01 3VN 4.3.3.7 GO:0005737 ... Q9PPB4 N/A
    55 7kto:C (2.13) BS01 3VN 4.3.3.7 GO:0005737 ... Q9PPB4 N/A
    56 7kto:D (2.13) BS01 3VN 4.3.3.7 GO:0005737 ... Q9PPB4 N/A
    57 7kto:E (2.13) BS01 3VN 4.3.3.7 GO:0005737 ... Q9PPB4 N/A
    58 7kto:F (2.13) BS01 3VN 4.3.3.7 GO:0005737 ... Q9PPB4 N/A
    59 7kwf:A (2.82) BS01 3VN 4.3.3.7 GO:0005737 ... Q9PPB4 N/A
    60 7kwf:B (2.82) BS01 3VN 4.3.3.7 GO:0005737 ... Q9PPB4 N/A
    61 7kwf:C (2.82) BS01 3VN 4.3.3.7 GO:0005737 ... Q9PPB4 N/A
    62 7kwf:D (2.82) BS01 3VN 4.3.3.7 GO:0005737 ... Q9PPB4 N/A
    63 7kwf:E (2.82) BS01 3VN 4.3.3.7 GO:0005737 ... Q9PPB4 N/A
    64 7kwf:F (2.82) BS01 3VN 4.3.3.7 GO:0005737 ... Q9PPB4 N/A
    65 7kxh:A (1.94) BS01 3VN 4.3.3.7 GO:0005737 ... Q9PPB4 N/A
    66 7kxh:B (1.94) BS01 3VN 4.3.3.7 GO:0005737 ... Q9PPB4 N/A
    67 7kxh:C (1.94) BS01 3VN 4.3.3.7 GO:0005737 ... Q9PPB4 N/A
    68 7kxh:D (1.94) BS01 3VN 4.3.3.7 GO:0005737 ... Q9PPB4 N/A
    69 7kxh:E (1.94) BS01 3VN 4.3.3.7 GO:0005737 ... Q9PPB4 N/A
    70 7kxh:F (1.94) BS01 3VN 4.3.3.7 GO:0005737 ... Q9PPB4 N/A
    71 7m06:B (2.7) BS01 3VN 4.3.3.7 GO:0005737 ... Q9PPB4 N/A
    72 7m06:C (2.7) BS01 3VN 4.3.3.7 GO:0005737 ... Q9PPB4 N/A
    73 7m06:D (2.7) BS01 3VN 4.3.3.7 GO:0005737 ... Q9PPB4 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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