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BioLiP
Download all results in tab-seperated text for 44 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1th4:D (2.98) BS01 3TR 1.11.1.6 GO:0004096 ... P00432 N/A
    2 2xf2:A (1.8) BS02 3TR 1.11.1.6 GO:0004096 ... D9N167 N/A
    3 2xf2:E (1.8) BS02 3TR 1.11.1.6 GO:0004096 ... D9N167 N/A
    4 3krq:A (2.25) BS03 3TR 1.11.1.7 GO:0004601 ... P80025 20461536 MOAD: Kd=0.55uM
    5 3krq:A (2.25) BS04 3TR 1.11.1.7 GO:0004601 ... P80025 20461536 MOAD: Kd=0.55uM
    6 3sxv:A (2.1) BS04 3TR 1.11.1.7 GO:0004601 ... A0A452E9Y6 N/A
    7 3sxv:A (2.1) BS05 3TR 1.11.1.7 GO:0004601 ... A0A452E9Y6 N/A
    8 4b7a:A (1.95) BS02 3TR 1.11.1.6 GO:0004096 ... M4GGR5 N/A
    9 4b7a:A (1.95) BS03 3TR 1.11.1.6 GO:0004096 ... M4GGR5 N/A
    10 4b7a:B (1.95) BS02 3TR 1.11.1.6 GO:0004096 ... M4GGR5 N/A
    11 4b7a:B (1.95) BS03 3TR 1.11.1.6 GO:0004096 ... M4GGR5 N/A
    12 4b7a:C (1.95) BS02 3TR 1.11.1.6 GO:0004096 ... M4GGR5 N/A
    13 4b7a:C (1.95) BS03 3TR 1.11.1.6 GO:0004096 ... M4GGR5 N/A
    14 4b7a:D (1.95) BS02 3TR 1.11.1.6 GO:0004096 ... M4GGR5 N/A
    15 4b7a:D (1.95) BS03 3TR 1.11.1.6 GO:0004096 ... M4GGR5 N/A
    16 4lpf:A (2.3) BS01 3TR N/A GO:0000105 ... N/A N/A PDBbind: -logKd/Ki=3.51, Ki=310uM
    17 5fpe:A (1.96) BS01 3TR ? GO:0005524 ... P54652 26655740
    18 5fpe:A (1.96) BS02 3TR ? GO:0005524 ... P54652 26655740
    19 5fpe:B (1.96) BS01 3TR ? GO:0005524 ... P54652 26655740
    20 5fpe:B (1.96) BS02 3TR ? GO:0005524 ... P54652 26655740
    21 5fpe:B (1.96) BS03 3TR ? GO:0005524 ... P54652 26655740
    22 5s49:A (1.03) BS01 3TR 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 N/A P0DTD1 33853786
    23 5s49:A (1.03) BS02 3TR 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 N/A P0DTD1 33853786
    24 5s49:B (1.03) BS01 3TR 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 N/A P0DTD1 33853786
    25 5zz1:A (1.91) BS02 3TR 1.11.1.6 GO:0004096 ... M4GGR7 30289408 MOAD: Ki=0.021M
    26 5zz1:A (1.91) BS03 3TR 1.11.1.6 GO:0004096 ... M4GGR7 30289408 MOAD: Ki=0.021M
    27 5zz1:B (1.91) BS02 3TR 1.11.1.6 GO:0004096 ... M4GGR7 30289408 MOAD: Ki=0.021M
    28 5zz1:B (1.91) BS03 3TR 1.11.1.6 GO:0004096 ... M4GGR7 30289408 MOAD: Ki=0.021M
    29 5zz1:C (1.91) BS02 3TR 1.11.1.6 GO:0004096 ... M4GGR7 30289408 MOAD: Ki=0.021M
    30 5zz1:C (1.91) BS03 3TR 1.11.1.6 GO:0004096 ... M4GGR7 30289408 MOAD: Ki=0.021M
    31 5zz1:D (1.91) BS01 3TR 1.11.1.6 GO:0004096 ... M4GGR7 30289408 MOAD: Ki=0.021M
    32 5zz1:D (1.91) BS03 3TR 1.11.1.6 GO:0004096 ... M4GGR7 30289408 MOAD: Ki=0.021M
    33 7h84:A (1.38) BS01 3TR 2.1.1.-
    2.7.7.-
    2.7.7.19
    2.7.7.48
    3.1.3.84
    3.4.22.-
    3.6.1.15
    3.6.1.74
    3.6.4.13    		 N/A Q8JUX6 N/A
    34 7h84:A (1.38) BS02 3TR 2.1.1.-
    2.7.7.-
    2.7.7.19
    2.7.7.48
    3.1.3.84
    3.4.22.-
    3.6.1.15
    3.6.1.74
    3.6.4.13    		 N/A Q8JUX6 N/A
    35 7h84:B (1.38) BS01 3TR 2.1.1.-
    2.7.7.-
    2.7.7.19
    2.7.7.48
    3.1.3.84
    3.4.22.-
    3.6.1.15
    3.6.1.74
    3.6.4.13    		 N/A Q8JUX6 N/A
    36 7h84:B (1.38) BS02 3TR 2.1.1.-
    2.7.7.-
    2.7.7.19
    2.7.7.48
    3.1.3.84
    3.4.22.-
    3.6.1.15
    3.6.1.74
    3.6.4.13    		 N/A Q8JUX6 N/A
    37 7h84:B (1.38) BS03 3TR 2.1.1.-
    2.7.7.-
    2.7.7.19
    2.7.7.48
    3.1.3.84
    3.4.22.-
    3.6.1.15
    3.6.1.74
    3.6.4.13    		 N/A Q8JUX6 N/A
    38 7h84:B (1.38) BS04 3TR 2.1.1.-
    2.7.7.-
    2.7.7.19
    2.7.7.48
    3.1.3.84
    3.4.22.-
    3.6.1.15
    3.6.1.74
    3.6.4.13    		 N/A Q8JUX6 N/A
    39 7h84:C (1.38) BS01 3TR 2.1.1.-
    2.7.7.-
    2.7.7.19
    2.7.7.48
    3.1.3.84
    3.4.22.-
    3.6.1.15
    3.6.1.74
    3.6.4.13    		 N/A Q8JUX6 N/A
    40 7h84:C (1.38) BS02 3TR 2.1.1.-
    2.7.7.-
    2.7.7.19
    2.7.7.48
    3.1.3.84
    3.4.22.-
    3.6.1.15
    3.6.1.74
    3.6.4.13    		 N/A Q8JUX6 N/A
    41 7h84:C (1.38) BS03 3TR 2.1.1.-
    2.7.7.-
    2.7.7.19
    2.7.7.48
    3.1.3.84
    3.4.22.-
    3.6.1.15
    3.6.1.74
    3.6.4.13    		 N/A Q8JUX6 N/A
    42 7h84:C (1.38) BS04 3TR 2.1.1.-
    2.7.7.-
    2.7.7.19
    2.7.7.48
    3.1.3.84
    3.4.22.-
    3.6.1.15
    3.6.1.74
    3.6.4.13    		 N/A Q8JUX6 N/A
    43 7h84:D (1.38) BS01 3TR 2.1.1.-
    2.7.7.-
    2.7.7.19
    2.7.7.48
    3.1.3.84
    3.4.22.-
    3.6.1.15
    3.6.1.74
    3.6.4.13    		 N/A Q8JUX6 N/A
    44 7h84:D (1.38) BS02 3TR 2.1.1.-
    2.7.7.-
    2.7.7.19
    2.7.7.48
    3.1.3.84
    3.4.22.-
    3.6.1.15
    3.6.1.74
    3.6.4.13    		 N/A Q8JUX6 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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