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BioLiP
Download all results in tab-seperated text for 24 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3qz1:A (3.0) BS02 3QZ 1.14.14.16 GO:0004497 ... P00191 N/A
    2 3qz1:A (3.0) BS03 3QZ 1.14.14.16 GO:0004497 ... P00191 N/A
    3 3qz1:B (3.0) BS02 3QZ 1.14.14.16 GO:0004497 ... P00191 N/A
    4 3qz1:B (3.0) BS03 3QZ 1.14.14.16 GO:0004497 ... P00191 N/A
    5 3qz1:C (3.0) BS02 3QZ 1.14.14.16 GO:0004497 ... P00191 N/A
    6 3qz1:D (3.0) BS02 3QZ 1.14.14.16 GO:0004497 ... P00191 N/A
    7 3qz1:D (3.0) BS03 3QZ 1.14.14.16 GO:0004497 ... P00191 N/A
    8 4nky:A (2.55) BS02 3QZ 1.14.14.19
    1.14.14.32    		 GO:0004497 ... P05093 25301938
    9 4nky:B (2.55) BS02 3QZ 1.14.14.19
    1.14.14.32    		 GO:0004497 ... P05093 25301938
    10 4nky:C (2.55) BS02 3QZ 1.14.14.19
    1.14.14.32    		 GO:0004497 ... P05093 25301938
    11 4nky:D (2.55) BS02 3QZ 1.14.14.19
    1.14.14.32    		 GO:0004497 ... P05093 25301938
    12 5ier:A (2.005) BS01 3QZ N/A N/A N/A 28980354 PDBbind: -logKd/Ki=4.89, Kd~13uM
    13 5ier:B (2.005) BS01 3QZ N/A N/A N/A 28980354
    14 5ier:C (2.005) BS01 3QZ N/A N/A N/A 28980354
    15 5ier:D (2.005) BS01 3QZ N/A N/A N/A 28980354
    16 5if6:A (2.501) BS01 3QZ N/A N/A N/A 28980354 PDBbind: -logKd/Ki=7.23, Kd=59nM
    17 5if6:B (2.501) BS01 3QZ N/A N/A N/A 28980354
    18 5if6:C (2.501) BS01 3QZ N/A N/A N/A 28980354
    19 5if6:D (2.501) BS01 3QZ N/A N/A N/A 28980354
    20 5if6:E (2.501) BS01 3QZ N/A N/A N/A 28980354
    21 5if6:F (2.501) BS01 3QZ N/A N/A N/A 28980354
    22 5vbu:A (3.31) BS02 3QZ 1.14.14.16 GO:0004497 ... P08686 28539365
    23 5vbu:B (3.31) BS02 3QZ 1.14.14.16 GO:0004497 ... P08686 28539365
    24 5vbu:C (3.31) BS02 3QZ 1.14.14.16 GO:0004497 ... P08686 28539365
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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